Literature DB >> 23476407

Stable polymorph of morphine.

Thomas Gelbrich1, Doris E Braun, Ulrich J Griesser.   

Abstract

In the stable polymorph of the title compound, C17H19NO3 [systematic name: (5α,6α)-7,8-didehydro-4,5-ep-oxy-17-methyl-morphinan-3,6-diol], the mol-ecular conformation is in agreement with the characteristics of previously reported morphine forms. The molecule displays the typical T-shape and its piperidine ring adopts a slightly distorted chair conformation. Inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into helical chains parallel to the b axis. Intra-molecular O-H⋯O hydrogen bonds are also observed.

Entities:  

Year:  2012        PMID: 23476407      PMCID: PMC3588323          DOI: 10.1107/S1600536812048945

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Guguta et al. (2008 ▶); Gylbert (1973 ▶); Mackay & Hodgkin (1955 ▶); Bye (1976 ▶); Wongweichintana et al. (1984 ▶); Lutz & Spek (1998 ▶); Scheins et al. (2005 ▶); Gelbrich et al. (2012 ▶). For decriptions of morphine polymorphs, see: Kofler (1933 ▶); Kuhnert-Brandstätter et al. (1975 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For the program XPac, see: Gelbrich & Hursthouse (2005 ▶).

Experimental

Crystal data

C17H19NO3 M = 285.33 Orthorhombic, a = 7.6989 (10) Å b = 12.737 (4) Å c = 13.740 (4) Å V = 1347.4 (6) Å3 Z = 4 Cu Kα radiation μ = 0.78 mm−1 T = 173 K 0.15 × 0.10 × 0.03 mm

Data collection

Oxford Diffraction Xcalibur (Ruby, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2003 ▶) T min = 0.624, T max = 1.000 13009 measured reflections 1408 independent reflections 977 reflections with I > 2σ(I) R int = 0.118

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.141 S = 1.01 1408 reflections 192 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2003 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Bruker, 1998 ▶) and Mercury (Bruno et al., 2002 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812048945/im2413sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048945/im2413Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H19NO3F(000) = 608
Mr = 285.33Dx = 1.407 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54180 Å
Hall symbol: P 2ac 2abCell parameters from 1360 reflections
a = 7.6989 (10) Åθ = 3.2–68.2°
b = 12.737 (4) ŵ = 0.78 mm1
c = 13.740 (4) ÅT = 173 K
V = 1347.4 (6) Å3Plate, colourless
Z = 40.15 × 0.10 × 0.03 mm
Oxford Diffraction Xcalibur (Ruby, Gemini ultra) diffractometer1408 independent reflections
Radiation source: Enhance (Mo) X-ray Source977 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.118
Detector resolution: 10.3575 pixels mm-1θmax = 68.2°, θmin = 4.7°
ω scansh = −9→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2003)k = −14→15
Tmin = 0.624, Tmax = 1.000l = −16→16
13009 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.068H-atom parameters constrained
wR(F2) = 0.141w = 1/[σ2(Fo2) + (0.0112P)2 + 2.P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
1408 reflectionsΔρmax = 0.27 e Å3
192 parametersΔρmin = −0.26 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0043 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.The Flack x parameter (Flack, 1983) and the Hooft y parameter (Hooft et al., 2008) were both indeterminate due to a lack of significant resonant scattering. Accordingly, Friedel opposites were merged prior to the final refinement. [Flack, H. D. (1983). Acta Cryst. A39, 876–881; Hooft, R. W. W., Straver, L. H. & Spek, A. L. (2008). J. Appl. Cryst.41, 96–103.]
xyzUiso*/Ueq
O10.0998 (5)0.6564 (3)0.7856 (3)0.0520 (12)
H10.04310.71030.77050.062*
O20.3165 (5)0.4742 (3)0.7958 (3)0.0466 (11)
O30.1429 (6)0.2969 (3)0.7838 (3)0.0546 (12)
H30.10960.35870.79410.066*
N10.8422 (6)0.4378 (4)0.5555 (4)0.0492 (14)
C10.3549 (8)0.6662 (5)0.5563 (5)0.0458 (15)
H1A0.36110.70680.49840.055*
C20.2382 (8)0.6935 (5)0.6290 (5)0.0466 (16)
H20.16650.75340.61980.056*
C30.2223 (7)0.6362 (5)0.7147 (5)0.0429 (15)
C40.3281 (7)0.5499 (4)0.7238 (5)0.0408 (14)
C50.2959 (8)0.2985 (5)0.7233 (5)0.0494 (17)
H50.35540.22930.73200.059*
C60.4208 (7)0.3836 (5)0.7615 (5)0.0462 (16)
H60.49020.35480.81680.055*
C70.2554 (9)0.3091 (5)0.6180 (5)0.0499 (17)
H70.13980.29800.59610.060*
C80.3781 (9)0.3338 (5)0.5537 (5)0.0506 (17)
H80.35240.33400.48610.061*
C90.6652 (8)0.4267 (5)0.5160 (5)0.0450 (15)
H90.67480.38410.45510.054*
C100.5732 (8)0.5321 (5)0.4878 (5)0.0491 (17)
H10A0.66300.58380.46860.059*
H10B0.49840.51940.43040.059*
C110.4634 (7)0.5792 (5)0.5682 (4)0.0410 (14)
C120.4530 (7)0.5257 (5)0.6546 (4)0.0386 (14)
C130.5465 (8)0.4258 (5)0.6810 (4)0.0415 (15)
C140.5584 (8)0.3617 (5)0.5888 (5)0.0466 (16)
H140.62270.29530.60330.056*
C150.7290 (7)0.4477 (5)0.7212 (5)0.0443 (15)
H15A0.71990.49480.77830.053*
H15B0.78180.38090.74320.053*
C160.8453 (8)0.4978 (5)0.6457 (5)0.0521 (17)
H16A0.80560.57040.63290.062*
H16B0.96570.50120.67080.062*
C170.9652 (8)0.4788 (6)0.4841 (5)0.060 (2)
H17A0.93350.55100.46720.090*
H17B0.96210.43500.42540.090*
H17C1.08260.47780.51170.090*
U11U22U33U12U13U23
O10.040 (2)0.053 (2)0.063 (3)0.012 (2)0.008 (2)0.002 (2)
O20.031 (2)0.048 (2)0.060 (3)0.0019 (19)0.004 (2)0.000 (2)
O30.040 (2)0.050 (2)0.074 (3)−0.006 (2)0.014 (3)−0.002 (2)
N10.026 (2)0.063 (3)0.059 (3)0.001 (3)0.005 (2)0.003 (3)
C10.040 (3)0.043 (3)0.055 (4)0.003 (3)0.002 (3)0.006 (3)
C20.035 (3)0.044 (3)0.061 (5)0.008 (3)−0.004 (3)0.000 (3)
C30.027 (3)0.047 (3)0.055 (4)0.003 (3)0.003 (3)−0.003 (3)
C40.025 (3)0.046 (3)0.051 (4)0.000 (3)0.001 (3)0.000 (3)
C50.034 (3)0.048 (4)0.066 (5)−0.006 (3)0.009 (3)−0.001 (3)
C60.030 (3)0.048 (4)0.061 (4)0.000 (3)−0.001 (3)0.003 (3)
C70.039 (3)0.047 (4)0.064 (5)−0.005 (3)0.006 (3)−0.005 (3)
C80.044 (3)0.052 (4)0.056 (4)−0.005 (3)0.003 (3)−0.008 (3)
C90.037 (3)0.048 (4)0.050 (4)0.004 (3)0.003 (3)−0.003 (3)
C100.040 (3)0.058 (4)0.050 (4)0.008 (3)0.007 (3)0.006 (3)
C110.030 (3)0.047 (3)0.045 (4)0.004 (3)0.003 (3)−0.006 (3)
C120.024 (3)0.044 (3)0.048 (4)0.002 (3)−0.003 (3)0.001 (3)
C130.030 (3)0.046 (3)0.048 (4)0.000 (3)−0.002 (3)0.000 (3)
C140.038 (3)0.038 (3)0.065 (5)−0.001 (3)−0.001 (3)0.002 (3)
C150.032 (3)0.051 (4)0.050 (4)0.001 (3)−0.005 (3)0.000 (3)
C160.028 (3)0.064 (4)0.064 (4)−0.003 (3)0.000 (3)0.000 (4)
C170.033 (3)0.080 (5)0.066 (5)0.000 (4)0.008 (3)0.008 (4)
O1—C31.380 (7)C7—H70.9500
O1—H10.8400C8—C141.512 (9)
O2—C41.385 (7)C8—H80.9500
O2—C61.483 (7)C9—C141.538 (9)
O3—C51.442 (8)C9—C101.566 (9)
O3—H30.8400C9—H91.0000
N1—C161.456 (8)C10—C111.516 (8)
N1—C171.460 (8)C10—H10A0.9900
N1—C91.474 (8)C10—H10B0.9900
C1—C21.387 (9)C11—C121.371 (8)
C1—C111.397 (8)C12—C131.507 (8)
C1—H1A0.9500C13—C141.511 (9)
C2—C31.390 (9)C13—C151.535 (8)
C2—H20.9500C14—H141.0000
C3—C41.374 (8)C15—C161.512 (8)
C4—C121.387 (8)C15—H15A0.9900
C5—C71.486 (9)C15—H15B0.9900
C5—C61.542 (8)C16—H16A0.9900
C5—H51.0000C16—H16B0.9900
C6—C131.563 (9)C17—H17A0.9800
C6—H61.0000C17—H17B0.9800
C7—C81.331 (9)C17—H17C0.9800
C3—O1—H1109.5C11—C10—C9114.3 (5)
C4—O2—C6106.2 (4)C11—C10—H10A108.7
C5—O3—H3109.5C9—C10—H10A108.7
C16—N1—C17112.0 (5)C11—C10—H10B108.7
C16—N1—C9112.2 (5)C9—C10—H10B108.7
C17—N1—C9112.7 (5)H10A—C10—H10B107.6
C2—C1—C11120.1 (6)C12—C11—C1117.4 (6)
C2—C1—H1A119.9C12—C11—C10117.9 (5)
C11—C1—H1A119.9C1—C11—C10124.2 (6)
C1—C2—C3122.3 (6)C11—C12—C4121.6 (5)
C1—C2—H2118.8C11—C12—C13126.9 (5)
C3—C2—H2118.8C4—C12—C13110.7 (5)
C4—C3—O1119.3 (6)C12—C13—C14106.5 (5)
C4—C3—C2116.4 (6)C12—C13—C15111.7 (5)
O1—C3—C2124.1 (5)C14—C13—C15110.1 (5)
C3—C4—O2125.7 (5)C12—C13—C699.5 (5)
C3—C4—C12121.7 (6)C14—C13—C6116.4 (5)
O2—C4—C12112.4 (5)C15—C13—C6112.0 (5)
O3—C5—C7113.0 (5)C13—C14—C8109.8 (5)
O3—C5—C6108.9 (5)C13—C14—C9106.7 (5)
C7—C5—C6113.5 (5)C8—C14—C9114.2 (6)
O3—C5—H5107.0C13—C14—H14108.7
C7—C5—H5107.0C8—C14—H14108.7
C6—C5—H5107.0C9—C14—H14108.7
O2—C6—C5108.5 (5)C16—C15—C13111.9 (5)
O2—C6—C13107.1 (5)C16—C15—H15A109.2
C5—C6—C13112.8 (5)C13—C15—H15A109.2
O2—C6—H6109.5C16—C15—H15B109.2
C5—C6—H6109.5C13—C15—H15B109.2
C13—C6—H6109.5H15A—C15—H15B107.9
C8—C7—C5121.3 (6)N1—C16—C15110.7 (5)
C8—C7—H7119.4N1—C16—H16A109.5
C5—C7—H7119.4C15—C16—H16A109.5
C7—C8—C14119.7 (6)N1—C16—H16B109.5
C7—C8—H8120.1C15—C16—H16B109.5
C14—C8—H8120.1H16A—C16—H16B108.1
N1—C9—C14107.8 (5)N1—C17—H17A109.5
N1—C9—C10115.3 (5)N1—C17—H17B109.5
C14—C9—C10112.4 (5)H17A—C17—H17B109.5
N1—C9—H9107.0N1—C17—H17C109.5
C14—C9—H9107.0H17A—C17—H17C109.5
C10—C9—H9107.0H17B—C17—H17C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1···O3i0.841.962.757 (6)159
O3—H3···O20.842.172.629 (6)114
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O3i 0.841.962.757 (6)159
O3—H3⋯O20.842.172.629 (6)114

Symmetry code: (i) .

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