Literature DB >> 23476193

Morphine hydro-chloride anhydrate.

Thomas Gelbrich1, Doris E Braun, Ulrich J Griesser.   

Abstract

In the title mol-ecular salt [systematic name: (5α,6α)-7,8-didehydro-4,5-ep-oxy-17-methyl-morphinan-3,6-diol hydro-chloride], C17H20NO3(+)·Cl(-), the conformation of the morphinium ion is in agreement with the characteristics of the previously reported morphine forms [for example, Gylbert (1973 ▶). Acta Cryst. B29, 1630-1635]. In the crystal, the cations and chloride anions are linked into a helical chain propagating parallel to the b-axis direction by N-H⋯Cl and O-H⋯Cl hydrogen bonds. The title salt and the morphine monohydrate [Bye (1976 ▶) Acta Chem. Scand.30, 549-554] display very similar one-dimensional packing modes of their morphine components.

Entities:  

Year:  2012        PMID: 23476193      PMCID: PMC3588957          DOI: 10.1107/S1600536812046405

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Guguta et al. (2008 ▶); Gylbert (1973 ▶); Mackay & Hodgkin (1955 ▶); Bye (1976 ▶); Wongweichintana et al. (1984 ▶); Lutz & Spek (1998 ▶); Scheins et al. (2005 ▶). For hysdrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For the program XPac, see: Gelbrich & Hursthouse (2005 ▶) and for the corresponding XPac dissimilarity index, see: Gelbrich et al. (2012 ▶).

Experimental

Crystal data

C17H20NO3 +·Cl− M = 321.79 Orthorhombic, a = 7.3504 (2) Å b = 12.8524 (5) Å c = 16.0372 (5) Å V = 1515.04 (9) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 173 K 0.20 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur (Ruby, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2003 ▶) T min = 0.982, T max = 1.000 7406 measured reflections 2971 independent reflections 2803 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.069 S = 1.04 2971 reflections 229 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), 1245 Friedel pairs Flack parameter: 0.02 (5) Data collection: CrysAlis PRO (Oxford Diffraction, 2003 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXL97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046405/lx2271sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046405/lx2271Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20NO3+·ClF(000) = 680
Mr = 321.79Dx = 1.411 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.7107 Å
Hall symbol: P 2ac 2abCell parameters from 4272 reflections
a = 7.3504 (2) Åθ = 3.0–29.2°
b = 12.8524 (5) ŵ = 0.27 mm1
c = 16.0372 (5) ÅT = 173 K
V = 1515.04 (9) Å3Block, colourless
Z = 40.20 × 0.20 × 0.20 mm
Oxford Diffraction Xcalibur (Ruby, Gemini ultra) diffractometer2971 independent reflections
Radiation source: Enhance (Mo) X-ray Source2803 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
Detector resolution: 10.3575 pixels mm-1θmax = 26.0°, θmin = 3.0°
ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2003)k = −12→15
Tmin = 0.982, Tmax = 1.000l = −19→19
7406 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.069w = 1/[σ2(Fo2) + (0.0324P)2 + 0.2844P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2971 reflectionsΔρmax = 0.18 e Å3
229 parametersΔρmin = −0.15 e Å3
3 restraintsAbsolute structure: Flack (1983), 1245 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.02 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.96273 (5)0.72090 (4)0.82895 (3)0.03438 (12)
O10.83825 (19)0.64336 (10)0.65098 (8)0.0367 (3)
H1O0.877 (3)0.6586 (18)0.6972 (8)0.051 (7)*
O20.55524 (15)0.77200 (8)0.73074 (6)0.0242 (2)
O30.62377 (17)0.85259 (10)0.88464 (7)0.0294 (3)
H3O0.709 (2)0.8207 (16)0.8625 (13)0.050 (7)*
N10.29227 (19)1.08986 (11)0.56252 (9)0.0242 (3)
H1N0.221 (2)1.1239 (15)0.6013 (10)0.044 (6)*
C10.7896 (2)0.86915 (13)0.51135 (9)0.0243 (4)
H10.84360.89430.46150.042 (6)*
C20.8430 (2)0.77357 (14)0.54336 (10)0.0259 (4)
H20.93080.73380.51390.031 (5)*
C30.7717 (2)0.73423 (12)0.61752 (10)0.0245 (3)
C40.6342 (2)0.79226 (12)0.65458 (9)0.0202 (3)
C50.5554 (2)0.92311 (12)0.82414 (9)0.0227 (3)
H50.46280.96690.85340.019 (4)*
C60.4532 (2)0.86543 (12)0.75454 (9)0.0202 (3)
H60.33010.84460.77530.022 (4)*
C70.6973 (2)0.99708 (13)0.79168 (10)0.0242 (4)
H70.81311.00020.81790.031 (5)*
C80.6628 (2)1.05776 (13)0.72718 (10)0.0232 (4)
H80.75011.10730.70900.027 (5)*
C90.4862 (2)1.09416 (13)0.59477 (10)0.0220 (3)
H90.52111.16910.59990.022 (4)*
C100.6209 (2)1.04229 (14)0.53414 (11)0.0272 (4)
H10A0.57271.04890.47670.029 (5)*
H10B0.73771.08050.53640.048 (6)*
C110.6574 (2)0.92863 (13)0.55164 (9)0.0207 (3)
C120.5743 (2)0.88337 (12)0.61978 (9)0.0188 (3)
C130.43158 (19)0.93188 (12)0.67453 (9)0.0181 (3)
C140.4832 (2)1.04739 (12)0.68285 (9)0.0193 (3)
H140.38751.08360.71630.012 (4)*
C150.2383 (2)0.92357 (13)0.63760 (10)0.0243 (4)
H15A0.20780.84930.62900.033 (5)*
H15B0.14980.95280.67780.017 (4)*
C160.2217 (2)0.98094 (13)0.55534 (11)0.0283 (4)
H16A0.29120.94330.51190.030 (5)*
H16B0.09240.98270.53800.021 (4)*
C170.2666 (3)1.14956 (15)0.48358 (11)0.0349 (4)
H17A0.32411.11200.43740.035 (5)*
H17B0.32251.21840.48920.046 (6)*
H17C0.13631.15740.47230.041 (6)*
U11U22U33U12U13U23
Cl10.0245 (2)0.0376 (2)0.0411 (2)0.00496 (19)0.00355 (18)0.0024 (2)
O10.0476 (8)0.0244 (7)0.0383 (8)0.0127 (6)0.0048 (6)−0.0009 (6)
O20.0310 (6)0.0171 (5)0.0246 (6)0.0019 (5)0.0063 (5)0.0017 (4)
O30.0345 (7)0.0337 (7)0.0201 (6)0.0081 (6)0.0012 (5)0.0051 (5)
N10.0265 (7)0.0226 (7)0.0236 (7)0.0017 (6)−0.0054 (6)0.0008 (6)
C10.0234 (8)0.0297 (9)0.0199 (8)−0.0052 (7)0.0032 (7)−0.0035 (7)
C20.0240 (8)0.0281 (9)0.0256 (8)0.0007 (8)0.0028 (7)−0.0120 (8)
C30.0274 (8)0.0180 (8)0.0282 (8)0.0014 (7)−0.0008 (7)−0.0051 (7)
C40.0222 (7)0.0190 (8)0.0195 (7)−0.0047 (7)0.0005 (6)−0.0038 (6)
C50.0258 (8)0.0242 (8)0.0181 (7)0.0037 (7)0.0012 (7)0.0008 (6)
C60.0201 (7)0.0184 (8)0.0221 (7)0.0003 (7)0.0049 (7)0.0008 (6)
C70.0236 (8)0.0250 (8)0.0240 (8)−0.0018 (7)−0.0044 (7)−0.0058 (7)
C80.0245 (8)0.0185 (8)0.0267 (8)−0.0063 (7)−0.0010 (7)−0.0032 (7)
C90.0235 (8)0.0168 (7)0.0258 (8)−0.0025 (7)−0.0040 (6)0.0029 (6)
C100.0279 (9)0.0268 (9)0.0269 (9)0.0001 (8)0.0029 (7)0.0075 (7)
C110.0201 (8)0.0243 (8)0.0177 (7)−0.0042 (7)−0.0020 (6)−0.0009 (6)
C120.0188 (7)0.0179 (7)0.0198 (7)−0.0030 (6)−0.0024 (6)−0.0041 (6)
C130.0173 (7)0.0177 (7)0.0192 (7)−0.0029 (6)−0.0002 (6)0.0002 (6)
C140.0204 (7)0.0167 (7)0.0209 (8)−0.0008 (6)−0.0001 (6)−0.0016 (6)
C150.0200 (8)0.0225 (8)0.0303 (9)−0.0033 (7)−0.0022 (7)−0.0012 (7)
C160.0256 (9)0.0268 (9)0.0325 (9)−0.0009 (7)−0.0096 (7)−0.0051 (8)
C170.0449 (11)0.0311 (10)0.0288 (9)0.0037 (9)−0.0109 (8)0.0055 (8)
O1—C31.375 (2)C7—H70.9500
O1—H1O0.817 (9)C8—C141.505 (2)
O2—C41.3770 (17)C8—H80.9500
O2—C61.4665 (18)C9—C141.535 (2)
O3—C51.4196 (19)C9—C101.540 (2)
O3—H3O0.831 (10)C9—H91.0000
N1—C171.492 (2)C10—C111.511 (2)
N1—C161.497 (2)C10—H10A0.9900
N1—C91.517 (2)C10—H10B0.9900
N1—H1N0.925 (9)C11—C121.380 (2)
C1—C21.388 (2)C12—C131.503 (2)
C1—C111.395 (2)C13—C141.538 (2)
C1—H10.9500C13—C151.543 (2)
C2—C31.395 (2)C14—H141.0000
C2—H20.9500C15—C161.516 (2)
C3—C41.390 (2)C15—H15A0.9900
C4—C121.370 (2)C15—H15B0.9900
C5—C71.504 (2)C16—H16A0.9900
C5—C61.536 (2)C16—H16B0.9900
C5—H51.0000C17—H17A0.9800
C6—C131.549 (2)C17—H17B0.9800
C6—H61.0000C17—H17C0.9800
C7—C81.320 (2)
C3—O1—H1O105.8 (17)C10—C9—H9107.7
C4—O2—C6106.96 (11)C11—C10—C9114.53 (14)
C5—O3—H3O106.9 (16)C11—C10—H10A108.6
C17—N1—C16111.81 (13)C9—C10—H10A108.6
C17—N1—C9112.91 (14)C11—C10—H10B108.6
C16—N1—C9112.69 (13)C9—C10—H10B108.6
C17—N1—H1N104.8 (14)H10A—C10—H10B107.6
C16—N1—H1N107.3 (14)C12—C11—C1116.35 (15)
C9—N1—H1N106.7 (13)C12—C11—C10118.42 (14)
C2—C1—C11120.71 (15)C1—C11—C10124.55 (15)
C2—C1—H1119.6C4—C12—C11122.73 (14)
C11—C1—H1119.6C4—C12—C13109.92 (13)
C1—C2—C3122.00 (15)C11—C12—C13126.61 (14)
C1—C2—H2119.0C12—C13—C14106.19 (12)
C3—C2—H2119.0C12—C13—C15112.92 (13)
O1—C3—C4123.21 (14)C14—C13—C15109.10 (12)
O1—C3—C2120.45 (15)C12—C13—C6100.58 (12)
C4—C3—C2116.33 (15)C14—C13—C6115.78 (12)
C12—C4—O2112.80 (13)C15—C13—C6111.97 (12)
C12—C4—C3121.21 (14)C8—C14—C9112.77 (13)
O2—C4—C3125.76 (14)C8—C14—C13110.04 (13)
O3—C5—C7113.23 (13)C9—C14—C13107.56 (12)
O3—C5—C6111.20 (13)C8—C14—H14108.8
C7—C5—C6113.13 (12)C9—C14—H14108.8
O3—C5—H5106.2C13—C14—H14108.8
C7—C5—H5106.2C16—C15—C13112.00 (13)
C6—C5—H5106.2C16—C15—H15A109.2
O2—C6—C5109.51 (12)C13—C15—H15A109.2
O2—C6—C13106.75 (11)C16—C15—H15B109.2
C5—C6—C13112.69 (12)C13—C15—H15B109.2
O2—C6—H6109.3H15A—C15—H15B107.9
C5—C6—H6109.3N1—C16—C15111.09 (13)
C13—C6—H6109.3N1—C16—H16A109.4
C8—C7—C5120.73 (15)C15—C16—H16A109.4
C8—C7—H7119.6N1—C16—H16B109.4
C5—C7—H7119.6C15—C16—H16B109.4
C7—C8—C14119.11 (15)H16A—C16—H16B108.0
C7—C8—H8120.4N1—C17—H17A109.5
C14—C8—H8120.4N1—C17—H17B109.5
N1—C9—C14106.60 (12)H17A—C17—H17B109.5
N1—C9—C10111.91 (13)N1—C17—H17C109.5
C14—C9—C10114.89 (13)H17A—C17—H17C109.5
N1—C9—H9107.7H17B—C17—H17C109.5
C14—C9—H9107.7
D—H···AD—HH···AD···AD—H···A
O1—H1O···Cl10.82 (1)2.35 (1)3.1585 (14)173 (2)
O3—H3O···Cl10.83 (1)2.32 (1)3.1416 (13)168 (2)
N1—H1N···Cl1i0.93 (1)2.15 (1)3.0626 (15)169 (2)
C17—H17C···O3ii0.982.383.278 (2)153
C14—H14···O2i1.002.603.2149 (19)120
C2—H2···Cg1iii0.952.713.638 (2)165
Table 1

Hydrogen-bond and short-contact geometry (Å, °)

Cg1 is the centroid of the C1–C4/C12/C11 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯Cl10.82 (1)2.35 (1)3.1585 (14)173 (2)
O3—H3O⋯Cl10.83 (1)2.32 (1)3.1416 (13)168 (2)
N1—H1N⋯Cl1i 0.93 (1)2.15 (1)3.0626 (15)169 (2)
C17—H17C⋯O3ii 0.982.383.278 (2)153
C14—H14⋯O2i 1.002.603.2149 (19)120
C2—H2⋯Cg1iii 0.952.713.638 (2)165

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Submolecular partitioning of morphine hydrate based on its experimental charge density at 25 K.

Authors:  S Scheins; M Messerschmidt; P Luger
Journal:  Acta Crystallogr B       Date:  2005-07-19

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01
  4 in total
  3 in total

1.  Crystal structure of naltrexone chloride solvates with ethanol, propan-2-ol, and 2-methyl-propan-2-ol.

Authors:  Aveary R Menze; Jefferson P Sinnott; Alexander Y Nazarenko
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-06-13

2.  Stable polymorph of morphine.

Authors:  Thomas Gelbrich; Doris E Braun; Ulrich J Griesser
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-05

3.  Insights into hydrate formation and stability of morphinanes from a combination of experimental and computational approaches.

Authors:  Doris E Braun; Thomas Gelbrich; Volker Kahlenberg; Ulrich J Griesser
Journal:  Mol Pharm       Date:  2014-08-01       Impact factor: 4.939

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.