Literature DB >> 23476403

1-(2-Chloro-benzo-yl)-3-(2-trifluoro-methyl-phen-yl)thio-urea.

M Khawar Rauf1, Masahiro Ebihara, Amin Badshah.   

Abstract

The dihedral angle between the benzene rings in the title compound, C15H10ClF3N2OS, is 54.02 (4)°. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, N-H⋯S hydrogen bonds link the mol-ecules into inversion dimers.

Entities:  

Year:  2012        PMID: 23476403      PMCID: PMC3588247          DOI: 10.1107/S1600536812048829

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our previous work on the structural and coordination chemistry of N,N′-disubstituted thio­ureas and a related structure, see: Rauf et al. (2012 ▶). For a description of the Cambridge Structural Database, see: Allen et al. (2002 ▶).

Experimental

Crystal data

C15H10ClF3N2OS M = 358.76 Triclinic, a = 7.705 (3) Å b = 8.348 (3) Å c = 12.465 (5) Å α = 84.92 (1)° β = 72.913 (9)° γ = 86.272 (11)° V = 762.7 (5) Å3 Z = 2 Mo Kα radiation μ = 0.42 mm−1 T = 123 K 0.45 × 0.36 × 0.28 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer 5989 measured reflections 3408 independent reflections 3240 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.075 S = 1.07 3408 reflections 236 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: Yadokari-XG (Wakita, 2001 ▶; Kabuto et al., 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812048829/hg5276sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048829/hg5276Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812048829/hg5276Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H10ClF3N2OSZ = 2
Mr = 358.76F(000) = 364
Triclinic, P1Dx = 1.562 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71070 Å
a = 7.705 (3) ÅCell parameters from 2652 reflections
b = 8.348 (3) Åθ = 3.1–27.5°
c = 12.465 (5) ŵ = 0.42 mm1
α = 84.92 (1)°T = 123 K
β = 72.913 (9)°Block, colorless
γ = 86.272 (11)°0.45 × 0.36 × 0.28 mm
V = 762.7 (5) Å3
Rigaku/MSC Mercury CCD diffractometer3240 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.023
Graphite Monochromator monochromatorθmax = 27.5°, θmin = 3.1°
Detector resolution: 14.62 pixels mm-1h = −8→10
ω scansk = −10→10
5989 measured reflectionsl = −16→12
3408 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0273P)2 + 0.4772P] where P = (Fo2 + 2Fc2)/3
3408 reflections(Δ/σ)max = 0.001
236 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.88846 (18)0.27682 (16)0.40388 (11)0.0167 (3)
O11.00871 (14)0.25013 (13)0.31743 (8)0.0241 (2)
N10.72626 (15)0.35754 (14)0.40451 (9)0.0171 (2)
H10.64880.37120.47110.020*
C20.67122 (17)0.41979 (16)0.31202 (11)0.0157 (2)
S10.47107 (4)0.52082 (4)0.33205 (3)0.01981 (10)
N20.78777 (15)0.39383 (14)0.21154 (9)0.0181 (2)
H20.88740.33490.20970.022*
C30.91513 (17)0.22916 (16)0.51696 (11)0.0161 (3)
C40.79470 (18)0.13899 (16)0.60350 (11)0.0166 (3)
C50.8315 (2)0.09787 (17)0.70526 (12)0.0215 (3)
H50.74860.03670.76370.026*
C60.9904 (2)0.14674 (18)0.72090 (13)0.0243 (3)
H61.01500.12060.79090.029*
C71.1135 (2)0.23331 (19)0.63536 (13)0.0255 (3)
H71.22280.26520.64630.031*
C81.07667 (19)0.27344 (18)0.53359 (12)0.0219 (3)
H81.16210.33160.47460.026*
Cl10.60119 (5)0.06558 (4)0.58431 (3)0.02446 (10)
C90.76060 (17)0.45602 (16)0.10645 (10)0.0157 (3)
C100.72840 (17)0.35187 (16)0.03331 (11)0.0168 (3)
C110.71224 (18)0.41280 (17)−0.07151 (11)0.0182 (3)
H110.69020.3424−0.12150.022*
C120.72833 (18)0.57592 (17)−0.10270 (11)0.0194 (3)
H120.71740.6172−0.17400.023*
C130.76050 (19)0.67912 (17)−0.02973 (12)0.0211 (3)
H130.77150.7909−0.05130.025*
C140.77660 (19)0.61922 (17)0.07490 (12)0.0199 (3)
H140.79850.69010.12470.024*
C150.7096 (2)0.17576 (17)0.06715 (12)0.0221 (3)
F1B0.655 (4)0.094 (4)−0.007 (3)0.031 (2)0.48 (9)
F2B0.879 (4)0.112 (3)0.082 (2)0.027 (2)0.48 (9)
F3B0.582 (2)0.1436 (14)0.1620 (9)0.040 (4)0.48 (9)
F1A0.690 (5)0.096 (4)−0.015 (3)0.035 (3)0.52 (9)
F2A0.848 (3)0.098 (3)0.086 (2)0.031 (2)0.52 (9)
F3A0.5736 (17)0.1467 (12)0.1633 (7)0.030 (3)0.52 (9)
U11U22U33U12U13U23
C10.0175 (6)0.0172 (6)0.0149 (6)0.0001 (5)−0.0043 (5)−0.0007 (5)
O10.0208 (5)0.0306 (6)0.0164 (5)0.0078 (4)−0.0008 (4)0.0000 (4)
N10.0154 (5)0.0237 (6)0.0105 (5)0.0035 (4)−0.0020 (4)−0.0019 (4)
C20.0169 (6)0.0172 (6)0.0130 (6)−0.0007 (5)−0.0037 (5)−0.0028 (5)
S10.01603 (16)0.02989 (19)0.01299 (16)0.00589 (13)−0.00426 (12)−0.00353 (13)
N20.0174 (5)0.0241 (6)0.0116 (5)0.0057 (4)−0.0037 (4)−0.0019 (4)
C30.0164 (6)0.0168 (6)0.0152 (6)0.0026 (5)−0.0053 (5)−0.0019 (5)
C40.0178 (6)0.0153 (6)0.0173 (6)0.0000 (5)−0.0059 (5)−0.0022 (5)
C50.0281 (7)0.0189 (7)0.0170 (6)0.0004 (5)−0.0069 (5)0.0015 (5)
C60.0318 (8)0.0236 (7)0.0220 (7)0.0063 (6)−0.0160 (6)−0.0032 (6)
C70.0213 (7)0.0282 (8)0.0321 (8)0.0022 (6)−0.0151 (6)−0.0059 (6)
C80.0173 (6)0.0237 (7)0.0242 (7)−0.0004 (5)−0.0056 (5)−0.0010 (5)
Cl10.02307 (17)0.02779 (19)0.02433 (18)−0.00967 (13)−0.00880 (13)0.00143 (13)
C90.0136 (6)0.0212 (6)0.0105 (6)0.0020 (5)−0.0012 (4)−0.0017 (5)
C100.0150 (6)0.0195 (6)0.0140 (6)0.0006 (5)−0.0017 (5)−0.0015 (5)
C110.0170 (6)0.0239 (7)0.0134 (6)−0.0004 (5)−0.0033 (5)−0.0032 (5)
C120.0156 (6)0.0273 (7)0.0136 (6)0.0001 (5)−0.0030 (5)0.0028 (5)
C130.0207 (6)0.0196 (7)0.0214 (7)−0.0017 (5)−0.0044 (5)0.0028 (5)
C140.0208 (6)0.0209 (7)0.0182 (6)−0.0013 (5)−0.0052 (5)−0.0037 (5)
C150.0263 (7)0.0209 (7)0.0181 (7)0.0001 (5)−0.0051 (6)−0.0010 (5)
F1B0.043 (6)0.020 (2)0.034 (6)−0.010 (4)−0.015 (5)−0.005 (3)
F2B0.021 (5)0.016 (3)0.042 (2)0.003 (3)−0.011 (3)0.003 (2)
F3B0.046 (6)0.023 (5)0.042 (6)−0.003 (3)0.004 (4)−0.004 (4)
F1A0.054 (9)0.025 (2)0.029 (3)−0.010 (5)−0.014 (6)−0.0042 (18)
F2A0.023 (5)0.024 (3)0.049 (3)0.001 (3)−0.013 (3)0.000 (2)
F3A0.032 (4)0.029 (5)0.019 (4)−0.009 (3)0.002 (3)0.014 (3)
C1—O11.2240 (17)C8—H80.9500
C1—N11.3790 (17)C9—C141.387 (2)
C1—C31.4992 (18)C9—C101.3964 (19)
N1—C21.3898 (17)C10—C111.3968 (19)
N1—H10.8800C10—C151.497 (2)
C2—N21.3356 (17)C11—C121.386 (2)
C2—S11.6714 (14)C11—H110.9500
N2—C91.4338 (17)C12—C131.389 (2)
N2—H20.8800C12—H120.9500
C3—C41.3964 (19)C13—C141.392 (2)
C3—C81.3978 (19)C13—H130.9500
C4—C51.3889 (19)C14—H140.9500
C4—Cl11.7350 (14)C15—F2A1.28 (2)
C5—C61.386 (2)C15—F3B1.317 (13)
C5—H50.9500C15—F1A1.32 (3)
C6—C71.384 (2)C15—F3A1.355 (10)
C6—H60.9500C15—F1B1.37 (3)
C7—C81.388 (2)C15—F2B1.43 (2)
C7—H70.9500
O1—C1—N1123.21 (12)C9—C10—C11119.71 (13)
O1—C1—C3120.74 (12)C9—C10—C15120.33 (12)
N1—C1—C3115.98 (11)C11—C10—C15119.96 (12)
C1—N1—C2127.40 (11)C12—C11—C10120.07 (13)
C1—N1—H1116.3C12—C11—H11120.0
C2—N1—H1116.3C10—C11—H11120.0
N2—C2—N1115.63 (12)C11—C12—C13120.04 (13)
N2—C2—S1124.81 (10)C11—C12—H12120.0
N1—C2—S1119.55 (10)C13—C12—H12120.0
C2—N2—C9124.05 (11)C12—C13—C14120.19 (13)
C2—N2—H2118.0C12—C13—H13119.9
C9—N2—H2118.0C14—C13—H13119.9
C4—C3—C8118.57 (12)C9—C14—C13119.96 (13)
C4—C3—C1124.71 (12)C9—C14—H14120.0
C8—C3—C1116.66 (12)C13—C14—H14120.0
C5—C4—C3120.93 (13)F2A—C15—F3B101.9 (12)
C5—C4—Cl1118.00 (11)F2A—C15—F1A100 (2)
C3—C4—Cl1120.97 (10)F3B—C15—F1A111.6 (15)
C6—C5—C4119.47 (13)F2A—C15—F3A104.1 (12)
C6—C5—H5120.3F1A—C15—F3A111.2 (15)
C4—C5—H5120.3F2A—C15—F1B107.3 (18)
C7—C6—C5120.53 (13)F3B—C15—F1B101.8 (14)
C7—C6—H6119.7F3A—C15—F1B101.3 (13)
C5—C6—H6119.7F3B—C15—F2B107.7 (11)
C6—C7—C8119.83 (14)F1A—C15—F2B104 (2)
C6—C7—H7120.1F3A—C15—F2B109.9 (10)
C8—C7—H7120.1F1B—C15—F2B112.2 (17)
C7—C8—C3120.63 (13)F2A—C15—C10117.1 (11)
C7—C8—H8119.7F3B—C15—C10113.8 (6)
C3—C8—H8119.7F1A—C15—C10111.2 (14)
C14—C9—C10120.03 (12)F3A—C15—C10112.3 (5)
C14—C9—N2119.62 (12)F1B—C15—C10113.3 (14)
C10—C9—N2120.25 (12)F2B—C15—C10107.9 (10)
O1—C1—N1—C20.3 (2)C14—C9—C10—C11−0.06 (19)
C3—C1—N1—C2177.38 (12)N2—C9—C10—C11−176.44 (11)
C1—N1—C2—N22.0 (2)C14—C9—C10—C15−179.55 (12)
C1—N1—C2—S1−177.43 (11)N2—C9—C10—C154.08 (19)
N1—C2—N2—C9−176.33 (12)C9—C10—C11—C120.07 (19)
S1—C2—N2—C93.1 (2)C15—C10—C11—C12179.56 (12)
O1—C1—C3—C4−128.44 (15)C10—C11—C12—C130.0 (2)
N1—C1—C3—C454.45 (18)C11—C12—C13—C140.0 (2)
O1—C1—C3—C848.70 (19)C10—C9—C14—C130.0 (2)
N1—C1—C3—C8−128.41 (13)N2—C9—C14—C13176.40 (12)
C8—C3—C4—C51.8 (2)C12—C13—C14—C90.0 (2)
C1—C3—C4—C5178.93 (13)C9—C10—C15—F2A−62.3 (13)
C8—C3—C4—Cl1−174.53 (10)C11—C10—C15—F2A118.2 (13)
C1—C3—C4—Cl12.57 (19)C9—C10—C15—F3B56.3 (7)
C3—C4—C5—C6−0.2 (2)C11—C10—C15—F3B−123.2 (7)
Cl1—C4—C5—C6176.29 (11)C9—C10—C15—F1A−176.6 (17)
C4—C5—C6—C7−1.2 (2)C11—C10—C15—F1A3.9 (17)
C5—C6—C7—C80.8 (2)C9—C10—C15—F3A58.0 (5)
C6—C7—C8—C30.9 (2)C11—C10—C15—F3A−121.5 (5)
C4—C3—C8—C7−2.2 (2)C9—C10—C15—F1B172.0 (13)
C1—C3—C8—C7−179.51 (13)C11—C10—C15—F1B−7.5 (13)
C2—N2—C9—C1471.67 (18)C9—C10—C15—F2B−63.2 (11)
C2—N2—C9—C10−111.94 (15)C11—C10—C15—F2B117.3 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1···S1i0.882.583.4032 (16)157
N2—H2···O10.881.912.6179 (16)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯S1i 0.882.583.4032 (16)157
N2—H2⋯O10.881.912.6179 (16)136

Symmetry code: (i) .

  3 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1-Benzoyl-3-(2,4,5-trichloro-phen-yl)thio-urea.

Authors:  M Khawar Rauf; Masahiro Ebihara; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14
  3 in total

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