Literature DB >> 23476377

1-(4-Nitro-phen-yl)-1H-imidazol-3-ium chloride.

Halliru Ibrahim1, Muhammad D Bala.   

Abstract

In the title salt, C9H8N3O2(+)·Cl(-), the least-squares planes of the imidazolium and benzene rings are almost coplanar, making a dihedral angle of 4.59 (1)°. In the crystal, the chloride anion links the organic mol-ecules through N-H⋯Cl hydrogen bonds, forming chains that run diagonally across the bc face, which compliment strong C-H⋯O hydrogen bonds between neighbouring mol-ecules. These chains are connected to adjacent chains through two weak C-H⋯Cl inter-actions, resulting in hydrogen-bonded sheets extending along the b and c axes. The absolute structure of the title compound was determined using a Flack x parameter of 0.00 (6) and a Hooft y parameter of 0.03 (2).

Entities:  

Year:  2012        PMID: 23476377      PMCID: PMC3588291          DOI: 10.1107/S1600536812050878

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Gnanamgari et al. (2009 ▶); Coberan & Peris (2008 ▶); Singh et al., (2011 ▶). For the structure of imidazole with a bond to phenyl via carbon, see: Gayathri et al. (2010 ▶). For structure of imidazole with a bond to phenyl via nitro­gen, see: Zheng et al. (2011 ▶). For the structure of nitro­phenyl imidazole as a ligand in a complex, see: Singh et al. (2010 ▶, 2011 ▶). For related structures, see: Ishihara et al. (1992 ▶); Scheele et al., (2007 ▶). For our related work in this area, see: Ibrahim et al. (2012 ▶).

Experimental

Crystal data

C9H8N3O2 +·Cl− M = 225.64 Orthorhombic, a = 14.6042 (8) Å b = 12.1781 (7) Å c = 5.6070 (3) Å V = 997.21 (10) Å3 Z = 4 Mo Kα radiation μ = 0.37 mm−1 T = 173 K 0.54 × 0.16 × 0.15 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.524, T max = 0.746 20153 measured reflections 2217 independent reflections 2120 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.076 S = 1.09 2217 reflections 140 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), Hooft et al. (2010 ▶), Spek (2009 ▶); Hooft parameter = 0.03 (2), 856 Bijvoet pairs Flack parameter: 0.00 (6) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812050878/nr2034sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050878/nr2034Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812050878/nr2034Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8N3O2+·ClF(000) = 464
Mr = 225.64Dx = 1.503 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 9896 reflections
a = 14.6042 (8) Åθ = 2.2–28.3°
b = 12.1781 (7) ŵ = 0.37 mm1
c = 5.6070 (3) ÅT = 173 K
V = 997.21 (10) Å3Block, colourless
Z = 40.54 × 0.16 × 0.15 mm
Bruker SMART APEXII CCD diffractometer2217 independent reflections
Radiation source: fine-focus sealed tube2120 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.060
φ and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −17→19
Tmin = 0.524, Tmax = 0.746k = −16→16
20153 measured reflectionsl = −7→6
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0354P)2 + 0.3302P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2217 reflectionsΔρmax = 0.30 e Å3
140 parametersΔρmin = −0.22 e Å3
8 restraintsAbsolute structure: Flack (1983), Hooft et al. (2010) and Spek (2009); Hooft parameter = 0.03(2), 856 Bijvoet pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (6)
Experimental. Carbon-bound H-atoms were placed in calculated positions [C—H = 0.93 Å for aromatic H atoms; Uiso(H) = 1.2Ueq(C)] and were included in the refinement in the riding model. The nitrogen-bound H atom was located on a difference Fourier map and refined freely with isotropic parameters.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.61881 (11)0.39839 (13)−0.1020 (3)0.0241 (5)
H20.55560.4068−0.09180.029*
C40.76184 (13)0.41464 (15)−0.2179 (4)0.0308 (5)
H40.81310.4368−0.30390.037*
C30.76136 (12)0.34674 (15)−0.0291 (4)0.0303 (4)
H30.81200.31320.04020.036*
N30.54484 (10)0.08365 (11)0.8199 (3)0.0274 (3)
N20.67050 (9)0.33611 (11)0.0429 (3)0.0210 (3)
N10.67229 (10)0.44554 (12)−0.2608 (3)0.0251 (3)
O10.46671 (9)0.09724 (10)0.8910 (3)0.0323 (4)
O20.59895 (10)0.01721 (12)0.9069 (3)0.0406 (4)
H10.6548 (14)0.4898 (17)−0.386 (4)0.030 (5)*
Cl10.88518 (2)0.09410 (3)0.84010 (10)0.02647 (12)
C80.57713 (11)0.14961 (13)0.6161 (3)0.0217 (3)
C90.66889 (12)0.14545 (14)0.5571 (4)0.0303 (4)
H90.70930.10220.64430.036*
C100.69939 (11)0.20704 (13)0.3655 (4)0.0300 (4)
H100.76080.20480.32160.036*
C50.63843 (11)0.27213 (12)0.2387 (3)0.0204 (3)
C60.54623 (11)0.27679 (13)0.3038 (4)0.0264 (4)
H60.50580.32120.21960.032*
C70.51553 (11)0.21484 (13)0.4943 (4)0.0260 (4)
H70.45430.21700.53970.031*
U11U22U33U12U13U23
C20.0202 (8)0.0223 (7)0.0297 (13)0.0005 (6)−0.0001 (7)0.0027 (7)
C40.0233 (9)0.0369 (9)0.0323 (13)0.0006 (7)0.0030 (8)0.0051 (8)
C30.0172 (8)0.0356 (10)0.0380 (12)0.0008 (7)0.0036 (8)0.0068 (8)
N30.0293 (7)0.0286 (6)0.0242 (9)−0.0071 (5)−0.0034 (8)0.0010 (6)
N20.0173 (6)0.0196 (6)0.0262 (8)−0.0004 (5)0.0005 (6)−0.0007 (6)
N10.0247 (7)0.0232 (6)0.0274 (8)−0.0002 (5)−0.0003 (6)0.0013 (6)
O10.0286 (7)0.0373 (6)0.0311 (9)−0.0060 (5)0.0047 (6)0.0014 (6)
O20.0347 (7)0.0438 (8)0.0432 (10)−0.0032 (6)−0.0100 (6)0.0205 (7)
Cl10.01823 (18)0.02836 (18)0.0328 (2)−0.00189 (13)−0.00026 (19)0.0061 (2)
C80.0231 (8)0.0202 (7)0.0219 (9)−0.0046 (6)−0.0016 (7)0.0000 (6)
C90.0231 (8)0.0295 (9)0.0382 (12)0.0013 (7)−0.0040 (8)0.0089 (8)
C100.0161 (7)0.0326 (8)0.0415 (12)0.0018 (6)−0.0002 (8)0.0085 (9)
C50.0210 (8)0.0190 (6)0.0214 (8)−0.0021 (6)−0.0001 (6)−0.0009 (6)
C60.0202 (7)0.0256 (7)0.0333 (12)0.0044 (6)−0.0007 (8)0.0034 (7)
C70.0196 (8)0.0278 (8)0.0307 (10)0.0016 (6)0.0022 (7)−0.0005 (7)
C2—N11.316 (2)N1—H10.92 (2)
C2—N21.343 (2)C8—C71.381 (2)
C2—H20.9300C8—C91.381 (2)
C4—C31.343 (3)C9—C101.384 (3)
C4—N11.382 (2)C9—H90.9300
C4—H40.9300C10—C51.388 (2)
C3—N21.393 (2)C10—H100.9300
C3—H30.9300C5—C61.396 (2)
N3—O11.220 (2)C6—C71.382 (3)
N3—O21.232 (2)C6—H60.9300
N3—C81.474 (2)C7—H70.9300
N2—C51.425 (2)
N1—C2—N2108.78 (15)C7—C8—C9122.31 (17)
N1—C2—H2125.6C7—C8—N3119.25 (15)
N2—C2—H2125.6C9—C8—N3118.43 (16)
C3—C4—N1107.45 (16)C8—C9—C10118.58 (16)
C3—C4—H4126.3C8—C9—H9120.7
N1—C4—H4126.3C10—C9—H9120.7
C4—C3—N2106.90 (16)C9—C10—C5120.04 (15)
C4—C3—H3126.5C9—C10—H10120.0
N2—C3—H3126.5C5—C10—H10120.0
O1—N3—O2124.04 (17)C10—C5—C6120.53 (17)
O1—N3—C8118.59 (14)C10—C5—N2119.73 (15)
O2—N3—C8117.37 (15)C6—C5—N2119.73 (15)
C2—N2—C3107.90 (15)C7—C6—C5119.50 (15)
C2—N2—C5126.14 (14)C7—C6—H6120.2
C3—N2—C5125.95 (15)C5—C6—H6120.2
C2—N1—C4108.96 (16)C8—C7—C6119.02 (16)
C2—N1—H1127.3 (13)C8—C7—H7120.5
C4—N1—H1123.7 (13)C6—C7—H7120.5
N1—C4—C3—N20.1 (2)C8—C9—C10—C50.7 (3)
N1—C2—N2—C30.8 (2)C9—C10—C5—C60.4 (3)
N1—C2—N2—C5179.69 (15)C9—C10—C5—N2179.43 (17)
C4—C3—N2—C2−0.6 (2)C2—N2—C5—C10176.61 (17)
C4—C3—N2—C5−179.45 (15)C3—N2—C5—C10−4.7 (3)
N2—C2—N1—C4−0.7 (2)C2—N2—C5—C6−4.4 (3)
C3—C4—N1—C20.4 (2)C3—N2—C5—C6174.27 (17)
O1—N3—C8—C7−7.6 (2)C10—C5—C6—C7−0.8 (3)
O2—N3—C8—C7171.90 (17)N2—C5—C6—C7−179.81 (15)
O1—N3—C8—C9171.10 (16)C9—C8—C7—C61.1 (3)
O2—N3—C8—C9−9.4 (2)N3—C8—C7—C6179.81 (16)
C7—C8—C9—C10−1.5 (3)C5—C6—C7—C80.0 (3)
N3—C8—C9—C10179.81 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl1i0.92 (2)2.08 (2)2.9976 (17)178 (2)
C9—H9···Cl10.932.803.5898 (19)144
C2—H2···Cl1ii0.932.523.4286 (17)166
C4—H4···O2i0.932.293.181 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯Cl1i 0.92 (2)2.08 (2)2.9976 (17)178 (2)
C9—H9⋯Cl10.932.803.5898 (19)144
C2—H2⋯Cl1ii 0.932.523.4286 (17)166
C4—H4⋯O2i 0.932.293.181 (2)161

Symmetry codes: (i) ; (ii) .

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