| Literature DB >> 23476377 |
Halliru Ibrahim1, Muhammad D Bala.
Abstract
In the title salt, C9H8N3O2(+)·Cl(-), the least-squares planes of the imidazolium and benzene rings are almost coplanar, making a dihedral angle of 4.59 (1)°. In the crystal, the chloride anion links the organic mol-ecules through N-H⋯Cl hydrogen bonds, forming chains that run diagonally across the bc face, which compliment strong C-H⋯O hydrogen bonds between neighbouring mol-ecules. These chains are connected to adjacent chains through two weak C-H⋯Cl inter-actions, resulting in hydrogen-bonded sheets extending along the b and c axes. The absolute structure of the title compound was determined using a Flack x parameter of 0.00 (6) and a Hooft y parameter of 0.03 (2).Entities:
Year: 2012 PMID: 23476377 PMCID: PMC3588291 DOI: 10.1107/S1600536812050878
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H8N3O2+·Cl− | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 9896 reflections |
| θ = 2.2–28.3° | |
| µ = 0.37 mm−1 | |
| Block, colourless | |
| 0.54 × 0.16 × 0.15 mm |
| Bruker SMART APEXII CCD diffractometer | 2217 independent reflections |
| Radiation source: fine-focus sealed tube | 2120 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.3°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 20153 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2217 reflections | Δρmax = 0.30 e Å−3 |
| 140 parameters | Δρmin = −0.22 e Å−3 |
| 8 restraints | Absolute structure: Flack (1983), Hooft |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.00 (6) |
| Experimental. Carbon-bound H-atoms were placed in calculated positions [C—H = 0.93 Å for
aromatic H atoms; |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C2 | 0.61881 (11) | 0.39839 (13) | −0.1020 (3) | 0.0241 (5) | |
| H2 | 0.5556 | 0.4068 | −0.0918 | 0.029* | |
| C4 | 0.76184 (13) | 0.41464 (15) | −0.2179 (4) | 0.0308 (5) | |
| H4 | 0.8131 | 0.4368 | −0.3039 | 0.037* | |
| C3 | 0.76136 (12) | 0.34674 (15) | −0.0291 (4) | 0.0303 (4) | |
| H3 | 0.8120 | 0.3132 | 0.0402 | 0.036* | |
| N3 | 0.54484 (10) | 0.08365 (11) | 0.8199 (3) | 0.0274 (3) | |
| N2 | 0.67050 (9) | 0.33611 (11) | 0.0429 (3) | 0.0210 (3) | |
| N1 | 0.67229 (10) | 0.44554 (12) | −0.2608 (3) | 0.0251 (3) | |
| O1 | 0.46671 (9) | 0.09724 (10) | 0.8910 (3) | 0.0323 (4) | |
| O2 | 0.59895 (10) | 0.01721 (12) | 0.9069 (3) | 0.0406 (4) | |
| H1 | 0.6548 (14) | 0.4898 (17) | −0.386 (4) | 0.030 (5)* | |
| Cl1 | 0.88518 (2) | 0.09410 (3) | 0.84010 (10) | 0.02647 (12) | |
| C8 | 0.57713 (11) | 0.14961 (13) | 0.6161 (3) | 0.0217 (3) | |
| C9 | 0.66889 (12) | 0.14545 (14) | 0.5571 (4) | 0.0303 (4) | |
| H9 | 0.7093 | 0.1022 | 0.6443 | 0.036* | |
| C10 | 0.69939 (11) | 0.20704 (13) | 0.3655 (4) | 0.0300 (4) | |
| H10 | 0.7608 | 0.2048 | 0.3216 | 0.036* | |
| C5 | 0.63843 (11) | 0.27213 (12) | 0.2387 (3) | 0.0204 (3) | |
| C6 | 0.54623 (11) | 0.27679 (13) | 0.3038 (4) | 0.0264 (4) | |
| H6 | 0.5058 | 0.3212 | 0.2196 | 0.032* | |
| C7 | 0.51553 (11) | 0.21484 (13) | 0.4943 (4) | 0.0260 (4) | |
| H7 | 0.4543 | 0.2170 | 0.5397 | 0.031* |
| C2 | 0.0202 (8) | 0.0223 (7) | 0.0297 (13) | 0.0005 (6) | −0.0001 (7) | 0.0027 (7) |
| C4 | 0.0233 (9) | 0.0369 (9) | 0.0323 (13) | 0.0006 (7) | 0.0030 (8) | 0.0051 (8) |
| C3 | 0.0172 (8) | 0.0356 (10) | 0.0380 (12) | 0.0008 (7) | 0.0036 (8) | 0.0068 (8) |
| N3 | 0.0293 (7) | 0.0286 (6) | 0.0242 (9) | −0.0071 (5) | −0.0034 (8) | 0.0010 (6) |
| N2 | 0.0173 (6) | 0.0196 (6) | 0.0262 (8) | −0.0004 (5) | 0.0005 (6) | −0.0007 (6) |
| N1 | 0.0247 (7) | 0.0232 (6) | 0.0274 (8) | −0.0002 (5) | −0.0003 (6) | 0.0013 (6) |
| O1 | 0.0286 (7) | 0.0373 (6) | 0.0311 (9) | −0.0060 (5) | 0.0047 (6) | 0.0014 (6) |
| O2 | 0.0347 (7) | 0.0438 (8) | 0.0432 (10) | −0.0032 (6) | −0.0100 (6) | 0.0205 (7) |
| Cl1 | 0.01823 (18) | 0.02836 (18) | 0.0328 (2) | −0.00189 (13) | −0.00026 (19) | 0.0061 (2) |
| C8 | 0.0231 (8) | 0.0202 (7) | 0.0219 (9) | −0.0046 (6) | −0.0016 (7) | 0.0000 (6) |
| C9 | 0.0231 (8) | 0.0295 (9) | 0.0382 (12) | 0.0013 (7) | −0.0040 (8) | 0.0089 (8) |
| C10 | 0.0161 (7) | 0.0326 (8) | 0.0415 (12) | 0.0018 (6) | −0.0002 (8) | 0.0085 (9) |
| C5 | 0.0210 (8) | 0.0190 (6) | 0.0214 (8) | −0.0021 (6) | −0.0001 (6) | −0.0009 (6) |
| C6 | 0.0202 (7) | 0.0256 (7) | 0.0333 (12) | 0.0044 (6) | −0.0007 (8) | 0.0034 (7) |
| C7 | 0.0196 (8) | 0.0278 (8) | 0.0307 (10) | 0.0016 (6) | 0.0022 (7) | −0.0005 (7) |
| C2—N1 | 1.316 (2) | N1—H1 | 0.92 (2) |
| C2—N2 | 1.343 (2) | C8—C7 | 1.381 (2) |
| C2—H2 | 0.9300 | C8—C9 | 1.381 (2) |
| C4—C3 | 1.343 (3) | C9—C10 | 1.384 (3) |
| C4—N1 | 1.382 (2) | C9—H9 | 0.9300 |
| C4—H4 | 0.9300 | C10—C5 | 1.388 (2) |
| C3—N2 | 1.393 (2) | C10—H10 | 0.9300 |
| C3—H3 | 0.9300 | C5—C6 | 1.396 (2) |
| N3—O1 | 1.220 (2) | C6—C7 | 1.382 (3) |
| N3—O2 | 1.232 (2) | C6—H6 | 0.9300 |
| N3—C8 | 1.474 (2) | C7—H7 | 0.9300 |
| N2—C5 | 1.425 (2) | ||
| N1—C2—N2 | 108.78 (15) | C7—C8—C9 | 122.31 (17) |
| N1—C2—H2 | 125.6 | C7—C8—N3 | 119.25 (15) |
| N2—C2—H2 | 125.6 | C9—C8—N3 | 118.43 (16) |
| C3—C4—N1 | 107.45 (16) | C8—C9—C10 | 118.58 (16) |
| C3—C4—H4 | 126.3 | C8—C9—H9 | 120.7 |
| N1—C4—H4 | 126.3 | C10—C9—H9 | 120.7 |
| C4—C3—N2 | 106.90 (16) | C9—C10—C5 | 120.04 (15) |
| C4—C3—H3 | 126.5 | C9—C10—H10 | 120.0 |
| N2—C3—H3 | 126.5 | C5—C10—H10 | 120.0 |
| O1—N3—O2 | 124.04 (17) | C10—C5—C6 | 120.53 (17) |
| O1—N3—C8 | 118.59 (14) | C10—C5—N2 | 119.73 (15) |
| O2—N3—C8 | 117.37 (15) | C6—C5—N2 | 119.73 (15) |
| C2—N2—C3 | 107.90 (15) | C7—C6—C5 | 119.50 (15) |
| C2—N2—C5 | 126.14 (14) | C7—C6—H6 | 120.2 |
| C3—N2—C5 | 125.95 (15) | C5—C6—H6 | 120.2 |
| C2—N1—C4 | 108.96 (16) | C8—C7—C6 | 119.02 (16) |
| C2—N1—H1 | 127.3 (13) | C8—C7—H7 | 120.5 |
| C4—N1—H1 | 123.7 (13) | C6—C7—H7 | 120.5 |
| N1—C4—C3—N2 | 0.1 (2) | C8—C9—C10—C5 | 0.7 (3) |
| N1—C2—N2—C3 | 0.8 (2) | C9—C10—C5—C6 | 0.4 (3) |
| N1—C2—N2—C5 | 179.69 (15) | C9—C10—C5—N2 | 179.43 (17) |
| C4—C3—N2—C2 | −0.6 (2) | C2—N2—C5—C10 | 176.61 (17) |
| C4—C3—N2—C5 | −179.45 (15) | C3—N2—C5—C10 | −4.7 (3) |
| N2—C2—N1—C4 | −0.7 (2) | C2—N2—C5—C6 | −4.4 (3) |
| C3—C4—N1—C2 | 0.4 (2) | C3—N2—C5—C6 | 174.27 (17) |
| O1—N3—C8—C7 | −7.6 (2) | C10—C5—C6—C7 | −0.8 (3) |
| O2—N3—C8—C7 | 171.90 (17) | N2—C5—C6—C7 | −179.81 (15) |
| O1—N3—C8—C9 | 171.10 (16) | C9—C8—C7—C6 | 1.1 (3) |
| O2—N3—C8—C9 | −9.4 (2) | N3—C8—C7—C6 | 179.81 (16) |
| C7—C8—C9—C10 | −1.5 (3) | C5—C6—C7—C8 | 0.0 (3) |
| N3—C8—C9—C10 | 179.81 (16) |
| H··· | ||||
| N1—H1···Cl1i | 0.92 (2) | 2.08 (2) | 2.9976 (17) | 178 (2) |
| C9—H9···Cl1 | 0.93 | 2.80 | 3.5898 (19) | 144 |
| C2—H2···Cl1ii | 0.93 | 2.52 | 3.4286 (17) | 166 |
| C4—H4···O2i | 0.93 | 2.29 | 3.181 (2) | 161 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯Cl1i | 0.92 (2) | 2.08 (2) | 2.9976 (17) | 178 (2) |
| C9—H9⋯Cl1 | 0.93 | 2.80 | 3.5898 (19) | 144 |
| C2—H2⋯Cl1ii | 0.93 | 2.52 | 3.4286 (17) | 166 |
| C4—H4⋯O2i | 0.93 | 2.29 | 3.181 (2) | 161 |
Symmetry codes: (i) ; (ii) .