Literature DB >> 23476321

Dichlorido{N-[(5-methyl-thio-phen-2-yl)methyl-idene]-2-(pyridin-2-yl)ethanamine-κ(2) N,N'}palladium(II).

Mduduzi P Radebe1, Martin O Onani, William M Motswainyana.   

Abstract

In the title compound, [PdCl2(C13H14N2S)], the Pd(II) ion is coordinated by two N atoms of the chelating bidentate ligand and two chloride anions, giving rise to a distorted square-planar geometry. The methyl-substituted thio-phene arm and the pyridine ring are connected to the metal cation through N atoms to form a six-membered chelate ring with a boat conformation, making the complex stable.

Entities:  

Year:  2012        PMID: 23476321      PMCID: PMC3588236          DOI: 10.1107/S1600536812049240

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of imino-pyridyl ligands and their transition metal-based complexes, see: Onani & Motswainyana (2011 ▶); Motswainyana et al. (2011 ▶); Bianchini et al. (2010 ▶). For related structures, see: Motswainyana et al. (2012 ▶); Chen et al. (2007 ▶). For applications of these complexes, see: Ardizzoia et al. (2009 ▶); Tianpengfei et al. (2011 ▶).

Experimental

Crystal data

[PdCl2(C13H14N2S)] M = 407.62 Monoclinic, a = 12.0110 (5) Å b = 9.1633 (4) Å c = 13.6456 (6) Å β = 97.930 (1)° V = 1487.48 (11) Å3 Z = 4 Mo Kα radiation μ = 1.73 mm−1 T = 173 K 0.15 × 0.07 × 0.04 mm

Data collection

Bruker Kappa DUO APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.781, T max = 0.934 14701 measured reflections 3706 independent reflections 3129 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.056 S = 1.02 3706 reflections 173 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.62 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812049240/bh2466sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049240/bh2466Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C13H14N2S)]F(000) = 808
Mr = 407.62Dx = 1.820 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 14701 reflections
a = 12.0110 (5) Åθ = 1.7–28.3°
b = 9.1633 (4) ŵ = 1.73 mm1
c = 13.6456 (6) ÅT = 173 K
β = 97.930 (1)°Needle, yellow
V = 1487.48 (11) Å30.15 × 0.07 × 0.04 mm
Z = 4
Bruker Kappa DUO APEXII diffractometer3706 independent reflections
Radiation source: fine-focus sealed tube3129 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
0.5° φ scans and ω scansθmax = 28.3°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −16→16
Tmin = 0.781, Tmax = 0.934k = −12→12
14701 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.056H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0227P)2 + 0.6596P] where P = (Fo2 + 2Fc2)/3
3706 reflections(Δ/σ)max = 0.001
173 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.62 e Å3
0 constraints
xyzUiso*/Ueq
Pd10.253855 (14)0.164855 (19)0.101073 (12)0.01838 (6)
Cl10.35052 (5)0.08399 (7)0.24845 (4)0.02846 (14)
Cl20.08238 (5)0.11869 (7)0.15214 (4)0.02567 (13)
S10.18709 (5)0.48733 (6)0.13240 (4)0.02374 (13)
N10.39778 (16)0.2026 (2)0.04460 (14)0.0229 (4)
N20.18590 (15)0.2349 (2)−0.03402 (14)0.0200 (4)
C10.4789 (2)0.2919 (3)0.0894 (2)0.0276 (5)
H10.47200.32990.15310.033*
C20.5710 (2)0.3293 (3)0.0452 (2)0.0356 (6)
H20.62600.39470.07680.043*
C30.5820 (2)0.2704 (4)−0.0453 (2)0.0397 (7)
H30.64550.2940−0.07680.048*
C40.5005 (2)0.1767 (3)−0.0909 (2)0.0346 (6)
H40.50850.1342−0.15300.042*
C50.4071 (2)0.1452 (3)−0.04537 (18)0.0248 (5)
C60.3119 (2)0.0495 (3)−0.08966 (18)0.0295 (6)
H6A0.3029−0.0311−0.04310.035*
H6B0.33160.0057−0.15130.035*
C70.1988 (2)0.1301 (3)−0.11346 (17)0.0260 (5)
H7A0.19620.1824−0.17720.031*
H7B0.13630.0588−0.11960.031*
C80.15436 (18)0.3656 (3)−0.05905 (17)0.0208 (5)
H80.13320.3829−0.12770.025*
C90.14775 (18)0.4873 (3)0.00534 (16)0.0203 (5)
C100.10937 (19)0.6228 (3)−0.02615 (18)0.0240 (5)
H100.08360.6448−0.09350.029*
C110.11169 (19)0.7260 (3)0.05032 (18)0.0248 (5)
H110.08780.82440.04010.030*
C120.15202 (19)0.6694 (3)0.14103 (18)0.0235 (5)
C130.1685 (2)0.7445 (3)0.23892 (19)0.0337 (6)
H13A0.13800.84360.23150.051*
H13B0.24900.74900.26380.051*
H13C0.12950.69000.28580.051*
U11U22U33U12U13U23
Pd10.02171 (9)0.01803 (9)0.01521 (9)0.00063 (7)0.00192 (6)0.00031 (7)
Cl10.0322 (3)0.0323 (3)0.0194 (3)0.0027 (2)−0.0018 (2)0.0039 (2)
Cl20.0246 (3)0.0253 (3)0.0277 (3)0.0007 (2)0.0059 (2)0.0051 (2)
S10.0342 (3)0.0184 (3)0.0181 (3)0.0019 (2)0.0018 (2)0.0024 (2)
N10.0241 (10)0.0231 (10)0.0212 (10)0.0031 (8)0.0020 (8)0.0018 (8)
N20.0226 (9)0.0210 (10)0.0162 (9)0.0002 (8)0.0017 (7)−0.0010 (8)
C10.0250 (12)0.0270 (13)0.0300 (14)0.0025 (10)0.0011 (10)0.0013 (11)
C20.0246 (12)0.0367 (16)0.0445 (17)0.0001 (11)0.0011 (11)0.0089 (13)
C30.0240 (13)0.0556 (19)0.0410 (17)0.0075 (13)0.0104 (12)0.0203 (15)
C40.0353 (14)0.0474 (17)0.0226 (13)0.0178 (13)0.0094 (11)0.0080 (12)
C50.0291 (12)0.0252 (12)0.0203 (12)0.0087 (10)0.0036 (9)0.0031 (10)
C60.0392 (14)0.0271 (13)0.0220 (13)0.0062 (11)0.0034 (10)−0.0071 (10)
C70.0345 (13)0.0254 (13)0.0171 (12)−0.0009 (10)−0.0005 (10)−0.0060 (9)
C80.0203 (10)0.0273 (13)0.0150 (11)−0.0006 (9)0.0025 (8)0.0022 (9)
C90.0204 (11)0.0247 (12)0.0163 (11)0.0007 (9)0.0039 (8)0.0038 (9)
C100.0231 (11)0.0264 (12)0.0226 (12)0.0010 (9)0.0033 (9)0.0077 (10)
C110.0232 (11)0.0204 (12)0.0318 (14)0.0027 (9)0.0073 (10)0.0045 (10)
C120.0251 (11)0.0186 (11)0.0281 (13)−0.0014 (9)0.0083 (9)0.0018 (10)
C130.0490 (16)0.0222 (13)0.0319 (15)−0.0002 (12)0.0123 (12)−0.0023 (11)
Pd1—N22.0152 (18)C5—C61.500 (3)
Pd1—N12.017 (2)C6—C71.541 (3)
Pd1—Cl12.3016 (6)C6—H6A0.9900
Pd1—Cl22.3027 (6)C6—H6B0.9900
S1—C121.729 (2)C7—H7A0.9900
S1—C91.733 (2)C7—H7B0.9900
N1—C11.352 (3)C8—C91.429 (3)
N1—C51.355 (3)C8—H80.9500
N2—C81.288 (3)C9—C101.373 (3)
N2—C71.472 (3)C10—C111.406 (3)
C1—C21.374 (4)C10—H100.9500
C1—H10.9500C11—C121.368 (3)
C2—C31.371 (4)C11—H110.9500
C2—H20.9500C12—C131.491 (3)
C3—C41.384 (4)C13—H13A0.9800
C3—H30.9500C13—H13B0.9800
C4—C51.385 (4)C13—H13C0.9800
C4—H40.9500
N2—Pd1—N181.73 (7)C5—C6—H6B108.8
N2—Pd1—Cl1173.54 (6)C7—C6—H6B108.8
N1—Pd1—Cl191.91 (6)H6A—C6—H6B107.7
N2—Pd1—Cl293.96 (5)N2—C7—C6109.68 (19)
N1—Pd1—Cl2175.20 (6)N2—C7—H7A109.7
Cl1—Pd1—Cl292.34 (2)C6—C7—H7A109.7
C12—S1—C991.90 (12)N2—C7—H7B109.7
C1—N1—C5120.0 (2)C6—C7—H7B109.7
C1—N1—Pd1122.21 (17)H7A—C7—H7B108.2
C5—N1—Pd1117.53 (16)N2—C8—C9127.0 (2)
C8—N2—C7117.9 (2)N2—C8—H8116.5
C8—N2—Pd1127.30 (16)C9—C8—H8116.5
C7—N2—Pd1113.28 (15)C10—C9—C8123.9 (2)
N1—C1—C2121.7 (3)C10—C9—S1110.26 (18)
N1—C1—H1119.1C8—C9—S1125.80 (17)
C2—C1—H1119.1C9—C10—C11113.9 (2)
C3—C2—C1118.7 (3)C9—C10—H10123.1
C3—C2—H2120.6C11—C10—H10123.1
C1—C2—H2120.6C12—C11—C10112.6 (2)
C2—C3—C4119.9 (3)C12—C11—H11123.7
C2—C3—H3120.0C10—C11—H11123.7
C4—C3—H3120.0C11—C12—C13128.5 (2)
C3—C4—C5119.6 (3)C11—C12—S1111.32 (18)
C3—C4—H4120.2C13—C12—S1120.16 (18)
C5—C4—H4120.2C12—C13—H13A109.5
N1—C5—C4119.9 (2)C12—C13—H13B109.5
N1—C5—C6116.0 (2)H13A—C13—H13B109.5
C4—C5—C6124.1 (2)C12—C13—H13C109.5
C5—C6—C7114.0 (2)H13A—C13—H13C109.5
C5—C6—H6A108.8H13B—C13—H13C109.5
C7—C6—H6A108.8
N2—Pd1—N1—C1124.39 (19)N1—C5—C6—C764.5 (3)
Cl1—Pd1—N1—C1−56.80 (18)C4—C5—C6—C7−115.2 (3)
N2—Pd1—N1—C5−49.93 (17)C8—N2—C7—C6132.5 (2)
Cl1—Pd1—N1—C5128.88 (16)Pd1—N2—C7—C6−34.5 (2)
N1—Pd1—N2—C8−94.6 (2)C5—C6—C7—N2−39.7 (3)
Cl2—Pd1—N2—C887.59 (19)C7—N2—C8—C9−173.1 (2)
N1—Pd1—N2—C771.03 (16)Pd1—N2—C8—C9−8.1 (3)
Cl2—Pd1—N2—C7−106.83 (15)N2—C8—C9—C10−177.5 (2)
C5—N1—C1—C21.3 (4)N2—C8—C9—S13.0 (4)
Pd1—N1—C1—C2−172.90 (19)C12—S1—C9—C10−0.28 (18)
N1—C1—C2—C3−2.0 (4)C12—S1—C9—C8179.2 (2)
C1—C2—C3—C40.7 (4)C8—C9—C10—C11−179.3 (2)
C2—C3—C4—C51.2 (4)S1—C9—C10—C110.2 (3)
C1—N1—C5—C40.7 (3)C9—C10—C11—C120.0 (3)
Pd1—N1—C5—C4175.19 (18)C10—C11—C12—C13179.1 (2)
C1—N1—C5—C6−179.0 (2)C10—C11—C12—S1−0.2 (3)
Pd1—N1—C5—C6−4.5 (3)C9—S1—C12—C110.27 (19)
C3—C4—C5—N1−2.0 (4)C9—S1—C12—C13−179.1 (2)
C3—C4—C5—C6177.7 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dichlorido{2-[(thio-phen-2-ylmeth-yl)imino-meth-yl]pyridine-κN,N'}palladium(II).

Authors:  Martin O Onani; William M Motswainyana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-17

3.  Dichlorido[2-(phenyl-imino-meth-yl)quinoline-N,N']palladium(II).

Authors:  William M Motswainyana; Martin O Onani; Abram M Madiehe
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-07
  3 in total

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