| Literature DB >> 23476321 |
Mduduzi P Radebe1, Martin O Onani, William M Motswainyana.
Abstract
In the title compound, [PdCl2(C13H14N2S)], the Pd(II) ion is coordinated by two N atoms of the chelating bidentate ligand and two chloride anions, giving rise to a distorted square-planar geometry. The methyl-substituted thio-phene arm and the pyridine ring are connected to the metal cation through N atoms to form a six-membered chelate ring with a boat conformation, making the complex stable.Entities:
Year: 2012 PMID: 23476321 PMCID: PMC3588236 DOI: 10.1107/S1600536812049240
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl2(C13H14N2S)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 14701 reflections |
| θ = 1.7–28.3° | |
| µ = 1.73 mm−1 | |
| β = 97.930 (1)° | Needle, yellow |
| 0.15 × 0.07 × 0.04 mm | |
| Bruker Kappa DUO APEXII diffractometer | 3706 independent reflections |
| Radiation source: fine-focus sealed tube | 3129 reflections with |
| Graphite monochromator | |
| 0.5° φ scans and ω scans | θmax = 28.3°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 14701 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3706 reflections | (Δ/σ)max = 0.001 |
| 173 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.62 e Å−3 |
| 0 constraints |
| Pd1 | 0.253855 (14) | 0.164855 (19) | 0.101073 (12) | 0.01838 (6) | |
| Cl1 | 0.35052 (5) | 0.08399 (7) | 0.24845 (4) | 0.02846 (14) | |
| Cl2 | 0.08238 (5) | 0.11869 (7) | 0.15214 (4) | 0.02567 (13) | |
| S1 | 0.18709 (5) | 0.48733 (6) | 0.13240 (4) | 0.02374 (13) | |
| N1 | 0.39778 (16) | 0.2026 (2) | 0.04460 (14) | 0.0229 (4) | |
| N2 | 0.18590 (15) | 0.2349 (2) | −0.03402 (14) | 0.0200 (4) | |
| C1 | 0.4789 (2) | 0.2919 (3) | 0.0894 (2) | 0.0276 (5) | |
| H1 | 0.4720 | 0.3299 | 0.1531 | 0.033* | |
| C2 | 0.5710 (2) | 0.3293 (3) | 0.0452 (2) | 0.0356 (6) | |
| H2 | 0.6260 | 0.3947 | 0.0768 | 0.043* | |
| C3 | 0.5820 (2) | 0.2704 (4) | −0.0453 (2) | 0.0397 (7) | |
| H3 | 0.6455 | 0.2940 | −0.0768 | 0.048* | |
| C4 | 0.5005 (2) | 0.1767 (3) | −0.0909 (2) | 0.0346 (6) | |
| H4 | 0.5085 | 0.1342 | −0.1530 | 0.042* | |
| C5 | 0.4071 (2) | 0.1452 (3) | −0.04537 (18) | 0.0248 (5) | |
| C6 | 0.3119 (2) | 0.0495 (3) | −0.08966 (18) | 0.0295 (6) | |
| H6A | 0.3029 | −0.0311 | −0.0431 | 0.035* | |
| H6B | 0.3316 | 0.0057 | −0.1513 | 0.035* | |
| C7 | 0.1988 (2) | 0.1301 (3) | −0.11346 (17) | 0.0260 (5) | |
| H7A | 0.1962 | 0.1824 | −0.1772 | 0.031* | |
| H7B | 0.1363 | 0.0588 | −0.1196 | 0.031* | |
| C8 | 0.15436 (18) | 0.3656 (3) | −0.05905 (17) | 0.0208 (5) | |
| H8 | 0.1332 | 0.3829 | −0.1277 | 0.025* | |
| C9 | 0.14775 (18) | 0.4873 (3) | 0.00534 (16) | 0.0203 (5) | |
| C10 | 0.10937 (19) | 0.6228 (3) | −0.02615 (18) | 0.0240 (5) | |
| H10 | 0.0836 | 0.6448 | −0.0935 | 0.029* | |
| C11 | 0.11169 (19) | 0.7260 (3) | 0.05032 (18) | 0.0248 (5) | |
| H11 | 0.0878 | 0.8244 | 0.0401 | 0.030* | |
| C12 | 0.15202 (19) | 0.6694 (3) | 0.14103 (18) | 0.0235 (5) | |
| C13 | 0.1685 (2) | 0.7445 (3) | 0.23892 (19) | 0.0337 (6) | |
| H13A | 0.1380 | 0.8436 | 0.2315 | 0.051* | |
| H13B | 0.2490 | 0.7490 | 0.2638 | 0.051* | |
| H13C | 0.1295 | 0.6900 | 0.2858 | 0.051* |
| Pd1 | 0.02171 (9) | 0.01803 (9) | 0.01521 (9) | 0.00063 (7) | 0.00192 (6) | 0.00031 (7) |
| Cl1 | 0.0322 (3) | 0.0323 (3) | 0.0194 (3) | 0.0027 (2) | −0.0018 (2) | 0.0039 (2) |
| Cl2 | 0.0246 (3) | 0.0253 (3) | 0.0277 (3) | 0.0007 (2) | 0.0059 (2) | 0.0051 (2) |
| S1 | 0.0342 (3) | 0.0184 (3) | 0.0181 (3) | 0.0019 (2) | 0.0018 (2) | 0.0024 (2) |
| N1 | 0.0241 (10) | 0.0231 (10) | 0.0212 (10) | 0.0031 (8) | 0.0020 (8) | 0.0018 (8) |
| N2 | 0.0226 (9) | 0.0210 (10) | 0.0162 (9) | 0.0002 (8) | 0.0017 (7) | −0.0010 (8) |
| C1 | 0.0250 (12) | 0.0270 (13) | 0.0300 (14) | 0.0025 (10) | 0.0011 (10) | 0.0013 (11) |
| C2 | 0.0246 (12) | 0.0367 (16) | 0.0445 (17) | 0.0001 (11) | 0.0011 (11) | 0.0089 (13) |
| C3 | 0.0240 (13) | 0.0556 (19) | 0.0410 (17) | 0.0075 (13) | 0.0104 (12) | 0.0203 (15) |
| C4 | 0.0353 (14) | 0.0474 (17) | 0.0226 (13) | 0.0178 (13) | 0.0094 (11) | 0.0080 (12) |
| C5 | 0.0291 (12) | 0.0252 (12) | 0.0203 (12) | 0.0087 (10) | 0.0036 (9) | 0.0031 (10) |
| C6 | 0.0392 (14) | 0.0271 (13) | 0.0220 (13) | 0.0062 (11) | 0.0034 (10) | −0.0071 (10) |
| C7 | 0.0345 (13) | 0.0254 (13) | 0.0171 (12) | −0.0009 (10) | −0.0005 (10) | −0.0060 (9) |
| C8 | 0.0203 (10) | 0.0273 (13) | 0.0150 (11) | −0.0006 (9) | 0.0025 (8) | 0.0022 (9) |
| C9 | 0.0204 (11) | 0.0247 (12) | 0.0163 (11) | 0.0007 (9) | 0.0039 (8) | 0.0038 (9) |
| C10 | 0.0231 (11) | 0.0264 (12) | 0.0226 (12) | 0.0010 (9) | 0.0033 (9) | 0.0077 (10) |
| C11 | 0.0232 (11) | 0.0204 (12) | 0.0318 (14) | 0.0027 (9) | 0.0073 (10) | 0.0045 (10) |
| C12 | 0.0251 (11) | 0.0186 (11) | 0.0281 (13) | −0.0014 (9) | 0.0083 (9) | 0.0018 (10) |
| C13 | 0.0490 (16) | 0.0222 (13) | 0.0319 (15) | −0.0002 (12) | 0.0123 (12) | −0.0023 (11) |
| Pd1—N2 | 2.0152 (18) | C5—C6 | 1.500 (3) |
| Pd1—N1 | 2.017 (2) | C6—C7 | 1.541 (3) |
| Pd1—Cl1 | 2.3016 (6) | C6—H6A | 0.9900 |
| Pd1—Cl2 | 2.3027 (6) | C6—H6B | 0.9900 |
| S1—C12 | 1.729 (2) | C7—H7A | 0.9900 |
| S1—C9 | 1.733 (2) | C7—H7B | 0.9900 |
| N1—C1 | 1.352 (3) | C8—C9 | 1.429 (3) |
| N1—C5 | 1.355 (3) | C8—H8 | 0.9500 |
| N2—C8 | 1.288 (3) | C9—C10 | 1.373 (3) |
| N2—C7 | 1.472 (3) | C10—C11 | 1.406 (3) |
| C1—C2 | 1.374 (4) | C10—H10 | 0.9500 |
| C1—H1 | 0.9500 | C11—C12 | 1.368 (3) |
| C2—C3 | 1.371 (4) | C11—H11 | 0.9500 |
| C2—H2 | 0.9500 | C12—C13 | 1.491 (3) |
| C3—C4 | 1.384 (4) | C13—H13A | 0.9800 |
| C3—H3 | 0.9500 | C13—H13B | 0.9800 |
| C4—C5 | 1.385 (4) | C13—H13C | 0.9800 |
| C4—H4 | 0.9500 | ||
| N2—Pd1—N1 | 81.73 (7) | C5—C6—H6B | 108.8 |
| N2—Pd1—Cl1 | 173.54 (6) | C7—C6—H6B | 108.8 |
| N1—Pd1—Cl1 | 91.91 (6) | H6A—C6—H6B | 107.7 |
| N2—Pd1—Cl2 | 93.96 (5) | N2—C7—C6 | 109.68 (19) |
| N1—Pd1—Cl2 | 175.20 (6) | N2—C7—H7A | 109.7 |
| Cl1—Pd1—Cl2 | 92.34 (2) | C6—C7—H7A | 109.7 |
| C12—S1—C9 | 91.90 (12) | N2—C7—H7B | 109.7 |
| C1—N1—C5 | 120.0 (2) | C6—C7—H7B | 109.7 |
| C1—N1—Pd1 | 122.21 (17) | H7A—C7—H7B | 108.2 |
| C5—N1—Pd1 | 117.53 (16) | N2—C8—C9 | 127.0 (2) |
| C8—N2—C7 | 117.9 (2) | N2—C8—H8 | 116.5 |
| C8—N2—Pd1 | 127.30 (16) | C9—C8—H8 | 116.5 |
| C7—N2—Pd1 | 113.28 (15) | C10—C9—C8 | 123.9 (2) |
| N1—C1—C2 | 121.7 (3) | C10—C9—S1 | 110.26 (18) |
| N1—C1—H1 | 119.1 | C8—C9—S1 | 125.80 (17) |
| C2—C1—H1 | 119.1 | C9—C10—C11 | 113.9 (2) |
| C3—C2—C1 | 118.7 (3) | C9—C10—H10 | 123.1 |
| C3—C2—H2 | 120.6 | C11—C10—H10 | 123.1 |
| C1—C2—H2 | 120.6 | C12—C11—C10 | 112.6 (2) |
| C2—C3—C4 | 119.9 (3) | C12—C11—H11 | 123.7 |
| C2—C3—H3 | 120.0 | C10—C11—H11 | 123.7 |
| C4—C3—H3 | 120.0 | C11—C12—C13 | 128.5 (2) |
| C3—C4—C5 | 119.6 (3) | C11—C12—S1 | 111.32 (18) |
| C3—C4—H4 | 120.2 | C13—C12—S1 | 120.16 (18) |
| C5—C4—H4 | 120.2 | C12—C13—H13A | 109.5 |
| N1—C5—C4 | 119.9 (2) | C12—C13—H13B | 109.5 |
| N1—C5—C6 | 116.0 (2) | H13A—C13—H13B | 109.5 |
| C4—C5—C6 | 124.1 (2) | C12—C13—H13C | 109.5 |
| C5—C6—C7 | 114.0 (2) | H13A—C13—H13C | 109.5 |
| C5—C6—H6A | 108.8 | H13B—C13—H13C | 109.5 |
| C7—C6—H6A | 108.8 | ||
| N2—Pd1—N1—C1 | 124.39 (19) | N1—C5—C6—C7 | 64.5 (3) |
| Cl1—Pd1—N1—C1 | −56.80 (18) | C4—C5—C6—C7 | −115.2 (3) |
| N2—Pd1—N1—C5 | −49.93 (17) | C8—N2—C7—C6 | 132.5 (2) |
| Cl1—Pd1—N1—C5 | 128.88 (16) | Pd1—N2—C7—C6 | −34.5 (2) |
| N1—Pd1—N2—C8 | −94.6 (2) | C5—C6—C7—N2 | −39.7 (3) |
| Cl2—Pd1—N2—C8 | 87.59 (19) | C7—N2—C8—C9 | −173.1 (2) |
| N1—Pd1—N2—C7 | 71.03 (16) | Pd1—N2—C8—C9 | −8.1 (3) |
| Cl2—Pd1—N2—C7 | −106.83 (15) | N2—C8—C9—C10 | −177.5 (2) |
| C5—N1—C1—C2 | 1.3 (4) | N2—C8—C9—S1 | 3.0 (4) |
| Pd1—N1—C1—C2 | −172.90 (19) | C12—S1—C9—C10 | −0.28 (18) |
| N1—C1—C2—C3 | −2.0 (4) | C12—S1—C9—C8 | 179.2 (2) |
| C1—C2—C3—C4 | 0.7 (4) | C8—C9—C10—C11 | −179.3 (2) |
| C2—C3—C4—C5 | 1.2 (4) | S1—C9—C10—C11 | 0.2 (3) |
| C1—N1—C5—C4 | 0.7 (3) | C9—C10—C11—C12 | 0.0 (3) |
| Pd1—N1—C5—C4 | 175.19 (18) | C10—C11—C12—C13 | 179.1 (2) |
| C1—N1—C5—C6 | −179.0 (2) | C10—C11—C12—S1 | −0.2 (3) |
| Pd1—N1—C5—C6 | −4.5 (3) | C9—S1—C12—C11 | 0.27 (19) |
| C3—C4—C5—N1 | −2.0 (4) | C9—S1—C12—C13 | −179.1 (2) |
| C3—C4—C5—C6 | 177.7 (2) |