Literature DB >> 22058700

Dichlorido{2-[(thio-phen-2-ylmeth-yl)imino-meth-yl]pyridine-κN,N'}palladium(II).

Martin O Onani1, William M Motswainyana.   

Abstract

In the title compound, [PdCl(2)(C(11)H(10)N(2)S)], the Pd(II) ion is four-coordinated in a distorted square-planar environment by two N atoms of the chelating 2-[(thio-phen-2-ylmeth-yl)imino-meth-yl]pyridine ligand and two chloride anions. The thio-phene ring is rotationally disordered over two orientations in a 1:1 ratio. The crystal packing exhibits weak inter-molecular C-H⋯Cl and C-H⋯S hydrogen bonds.

Entities:  

Year:  2011        PMID: 22058700      PMCID: PMC3201550          DOI: 10.1107/S1600536811037214

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of imino­pyridyl ligands and their transition metal-based complexes, see: Zhang et al. (2006 ▶); Bianchini et al. (2010 ▶). For related structures, see: Doherty et al. (2002 ▶); Ojwach et al. (2009 ▶); Motswainyana et al. (2011 ▶). For similar structures with nickel, see: Britovsek et al. (2003 ▶).

Experimental

Crystal data

[PdCl2(C11H10N2S)] M = 379.57 Monoclinic, a = 8.0061 (19) Å b = 17.768 (4) Å c = 8.864 (2) Å β = 98.353 (3)° V = 1247.6 (5) Å3 Z = 4 Mo Kα radiation μ = 2.06 mm−1 T = 100 K 0.24 × 0.19 × 0.06 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.638, T max = 0.887 6411 measured reflections 2656 independent reflections 2238 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.144 S = 1.07 2656 reflections 149 parameters 26 restraints H-atom parameters constrained Δρmax = 0.96 e Å−3 Δρmin = −0.98 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶; Atwood & Barbour, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811037214/cv5147sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037214/cv5147Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C11H10N2S)]F(000) = 744
Mr = 379.57Dx = 2.021 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3002 reflections
a = 8.0061 (19) Åθ = 2.3–27.6°
b = 17.768 (4) ŵ = 2.06 mm1
c = 8.864 (2) ÅT = 100 K
β = 98.353 (3)°Plate, yellow
V = 1247.6 (5) Å30.24 × 0.19 × 0.06 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2656 independent reflections
Radiation source: fine-focus sealed tube2238 reflections with I > 2σ(I)
graphiteRint = 0.036
ω scansθmax = 27.8°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.638, Tmax = 0.887k = −22→22
6411 measured reflectionsl = −11→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.096P)2] where P = (Fo2 + 2Fc2)/3
2656 reflections(Δ/σ)max = 0.017
149 parametersΔρmax = 0.96 e Å3
26 restraintsΔρmin = −0.98 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Pd10.30571 (5)−0.01089 (2)0.58087 (4)0.01686 (18)
Cl150.40550 (17)−0.08117 (7)0.79082 (15)0.0254 (3)
Cl160.16329 (16)−0.11300 (7)0.46964 (15)0.0238 (3)
N20.2291 (5)0.0612 (2)0.4078 (5)0.0179 (9)
N90.4236 (5)0.0838 (2)0.6682 (5)0.0167 (8)
C10.2820 (6)0.1286 (3)0.4327 (6)0.0186 (10)
H10.25210.16690.35900.022*
C30.1145 (6)0.0400 (3)0.2666 (6)0.0211 (10)
H3A0.1563−0.00780.22850.025*
H3B0.00160.02980.29500.025*
C100.3879 (6)0.1454 (3)0.5747 (6)0.0208 (10)
C110.4519 (6)0.2153 (3)0.6190 (6)0.0218 (11)
H110.42430.25770.55480.026*
C120.5564 (7)0.2239 (3)0.7569 (6)0.0225 (11)
H120.60090.27200.78810.027*
C130.5949 (7)0.1613 (3)0.8484 (6)0.0219 (10)
H130.66900.16530.94200.026*
C140.5223 (6)0.0922 (3)0.8001 (6)0.0203 (10)
H140.54490.04960.86470.024*
S8A−0.0145 (4)0.1806 (2)0.1442 (4)0.0239 (7)*0.50
C4A0.095 (2)0.0978 (8)0.1389 (14)0.024 (9)*0.50
C5A0.1525 (17)0.0901 (7)−0.0021 (15)0.029 (4)*0.50
H5A0.21280.0473−0.02870.035*0.50
C6A0.1126 (18)0.1522 (8)−0.1017 (14)0.018 (4)*0.50
H6A0.14390.1564−0.20070.021*0.50
C7A0.0239 (15)0.2047 (6)−0.0361 (13)0.016 (3)*0.50
H7A−0.01370.2506−0.08480.019*0.50
S8B0.1827 (5)0.07989 (19)−0.0198 (4)0.0248 (8)*0.50
C4B0.093 (3)0.0937 (10)0.1403 (18)0.011 (12)*0.50
C5B0.0011 (15)0.1601 (7)0.1324 (13)0.025 (3)*0.50
H5B−0.05830.17730.21110.030*0.50
C6B0.0055 (17)0.1999 (8)−0.0075 (15)0.030 (4)*0.50
H6B−0.04960.2466−0.03270.036*0.50
C7B0.098 (2)0.1628 (9)−0.0980 (19)0.037 (6)*0.50
H7B0.11440.1804−0.19590.045*0.50
U11U22U33U12U13U23
Pd10.0192 (3)0.0166 (3)0.0149 (3)0.00044 (13)0.00286 (17)0.00049 (13)
Cl150.0346 (7)0.0195 (6)0.0212 (7)0.0002 (5)0.0014 (5)0.0049 (5)
Cl160.0279 (7)0.0199 (6)0.0233 (7)−0.0034 (5)0.0028 (5)−0.0032 (5)
N20.016 (2)0.024 (2)0.014 (2)0.0025 (17)0.0029 (16)0.0014 (16)
N90.016 (2)0.019 (2)0.015 (2)0.0022 (15)0.0009 (16)0.0031 (15)
C10.022 (3)0.020 (2)0.014 (2)0.0006 (19)0.0036 (19)0.0013 (18)
C30.021 (3)0.021 (2)0.022 (3)−0.002 (2)0.002 (2)−0.003 (2)
C100.017 (2)0.023 (2)0.023 (3)0.0010 (19)0.004 (2)0.003 (2)
C110.024 (3)0.022 (2)0.019 (3)−0.001 (2)0.003 (2)0.004 (2)
C120.028 (3)0.018 (2)0.021 (3)0.000 (2)0.005 (2)−0.0017 (19)
C130.023 (3)0.027 (3)0.015 (2)−0.002 (2)−0.0009 (19)−0.001 (2)
C140.021 (3)0.019 (2)0.022 (3)−0.0049 (19)0.006 (2)0.003 (2)
Pd1—N22.024 (4)C13—C141.400 (7)
Pd1—N92.027 (4)C13—H130.9500
Pd1—Cl152.2866 (13)C14—H140.9500
Pd1—Cl162.2885 (13)S8A—C4A1.715 (13)
N2—C11.279 (6)S8A—C7A1.725 (11)
N2—C31.489 (6)C4A—C5A1.402 (14)
N9—C141.321 (7)C5A—C6A1.420 (14)
N9—C101.378 (6)C5A—H5A0.9500
C1—C101.443 (7)C6A—C7A1.354 (14)
C1—H10.9500C6A—H6A0.9500
C3—C4B1.462 (13)C7A—H7A0.9500
C3—C4A1.519 (12)S8B—C4B1.698 (14)
C3—H3A0.9900S8B—C7B1.726 (14)
C3—H3B0.9900C4B—C5B1.388 (15)
C10—C111.379 (7)C5B—C6B1.432 (14)
C11—C121.386 (7)C5B—H5B0.9500
C11—H110.9500C6B—C7B1.340 (15)
C12—C131.385 (7)C6B—H6B0.9500
C12—H120.9500C7B—H7B0.9500
N2—Pd1—N980.64 (16)C12—C13—C14118.6 (5)
N2—Pd1—Cl15173.71 (12)C12—C13—H13120.7
N9—Pd1—Cl1593.10 (12)C14—C13—H13120.7
N2—Pd1—Cl1695.62 (13)N9—C14—C13122.6 (5)
N9—Pd1—Cl16176.22 (11)N9—C14—H14118.7
Cl15—Pd1—Cl1690.63 (5)C13—C14—H14118.7
C1—N2—C3122.0 (4)C4A—S8A—C7A91.6 (5)
C1—N2—Pd1113.9 (3)C5A—C4A—C3125.9 (10)
C3—N2—Pd1124.0 (3)C5A—C4A—S8A110.1 (9)
C14—N9—C10119.2 (4)C3—C4A—S8A123.9 (8)
C14—N9—Pd1128.1 (3)C4A—C5A—C6A113.9 (11)
C10—N9—Pd1112.7 (3)C4A—C5A—H5A123.2
N2—C1—C10118.8 (4)C6A—C5A—H5A122.9
N2—C1—H1120.6C7A—C6A—C5A110.7 (11)
C10—C1—H1120.6C7A—C6A—H6A124.7
C4B—C3—N2117.9 (10)C5A—C6A—H6A124.7
N2—C3—C4A116.2 (8)C6A—C7A—S8A113.7 (9)
C4B—C3—H3A108.0C6A—C7A—H7A123.2
N2—C3—H3A107.8S8A—C7A—H7A123.1
C4A—C3—H3A109.4C4B—S8B—C7B91.3 (7)
C4B—C3—H3B107.6C5B—C4B—C3126.5 (11)
N2—C3—H3B107.8C5B—C4B—S8B111.5 (9)
C4A—C3—H3B108.1C3—C4B—S8B122.0 (10)
H3A—C3—H3B107.2C4B—C5B—C6B112.6 (11)
N9—C10—C11120.6 (5)C4B—C5B—H5B123.7
N9—C10—C1113.9 (4)C6B—C5B—H5B123.7
C11—C10—C1125.6 (5)C7B—C6B—C5B111.1 (12)
C10—C11—C12120.2 (5)C7B—C6B—H6B124.5
C10—C11—H11119.9C5B—C6B—H6B124.4
C12—C11—H11119.9C6B—C7B—S8B113.5 (11)
C13—C12—C11118.8 (5)C6B—C7B—H7B123.2
C13—C12—H12120.6S8B—C7B—H7B123.2
C11—C12—H12120.6
N9—Pd1—N2—C1−1.8 (3)Pd1—N9—C14—C13−179.1 (4)
Cl16—Pd1—N2—C1177.6 (3)C12—C13—C14—N92.5 (8)
N9—Pd1—N2—C3−178.8 (4)C4B—C3—C4A—C5A−50 (37)
Cl16—Pd1—N2—C30.6 (4)N2—C3—C4A—C5A112.1 (13)
N2—Pd1—N9—C14−179.2 (4)C4B—C3—C4A—S8A126 (39)
Cl15—Pd1—N9—C141.4 (4)N2—C3—C4A—S8A−71.9 (14)
N2—Pd1—N9—C102.5 (3)C7A—S8A—C4A—C5A−1.8 (10)
Cl15—Pd1—N9—C10−176.8 (3)C7A—S8A—C4A—C3−178.4 (14)
C3—N2—C1—C10177.8 (4)C3—C4A—C5A—C6A178.5 (15)
Pd1—N2—C1—C100.7 (6)S8A—C4A—C5A—C6A2.0 (13)
C1—N2—C3—C4B13.7 (10)C4A—C5A—C6A—C7A−1.0 (14)
Pd1—N2—C3—C4B−169.5 (8)C5A—C6A—C7A—S8A−0.4 (13)
C1—N2—C3—C4A13.0 (8)C4A—S8A—C7A—C6A1.3 (11)
Pd1—N2—C3—C4A−170.2 (6)N2—C3—C4B—C5B−74 (2)
C14—N9—C10—C11−1.0 (7)C4A—C3—C4B—C5B−56 (37)
Pd1—N9—C10—C11177.4 (4)N2—C3—C4B—S8B106.1 (15)
C14—N9—C10—C1178.7 (4)C4A—C3—C4B—S8B124 (39)
Pd1—N9—C10—C1−2.9 (5)C7B—S8B—C4B—C5B0.0 (14)
N2—C1—C10—N91.5 (7)C7B—S8B—C4B—C3179.7 (18)
N2—C1—C10—C11−178.7 (5)C3—C4B—C5B—C6B−179.9 (19)
N9—C10—C11—C121.5 (8)S8B—C4B—C5B—C6B−0.2 (15)
C1—C10—C11—C12−178.2 (5)C4B—C5B—C6B—C7B0.4 (15)
C10—C11—C12—C130.0 (8)C5B—C6B—C7B—S8B−0.4 (17)
C11—C12—C13—C14−2.0 (8)C4B—S8B—C7B—C6B0.2 (16)
C10—N9—C14—C13−1.0 (7)
D—H···AD—HH···AD···AD—H···A
C12—H12···Cl15i0.952.703.508 (6)143
C6B—H6B···Cl16ii0.952.743.622 (14)155
C7A—H7A···S8Aiii0.952.693.468 (12)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12⋯Cl15i0.952.703.508 (6)143
C6B—H6B⋯Cl16ii0.952.743.622 (14)155
C7A—H7A⋯S8Aiii0.952.693.468 (12)139

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  Dichlorido{N-[(5-methyl-thio-phen-2-yl)methyl-idene]-2-(pyridin-2-yl)ethanamine-κ(2) N,N'}palladium(II).

Authors:  Mduduzi P Radebe; Martin O Onani; William M Motswainyana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-08

2.  Dichlorido[2-(phenyl-imino-meth-yl)quinoline-N,N']palladium(II).

Authors:  William M Motswainyana; Martin O Onani; Abram M Madiehe
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-07
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