| Literature DB >> 22058700 |
Martin O Onani1, William M Motswainyana.
Abstract
In the title compound, [PdCl(2)(C(11)H(10)N(2)S)], the Pd(II) ion is four-coordinated in a distorted square-planar environment by two N atoms of the chelating 2-[(thio-phen-2-ylmeth-yl)imino-meth-yl]pyridine ligand and two chloride anions. The thio-phene ring is rotationally disordered over two orientations in a 1:1 ratio. The crystal packing exhibits weak inter-molecular C-H⋯Cl and C-H⋯S hydrogen bonds.Entities:
Year: 2011 PMID: 22058700 PMCID: PMC3201550 DOI: 10.1107/S1600536811037214
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl2(C11H10N2S)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3002 reflections |
| θ = 2.3–27.6° | |
| µ = 2.06 mm−1 | |
| β = 98.353 (3)° | Plate, yellow |
| 0.24 × 0.19 × 0.06 mm | |
| Bruker SMART APEX CCD area-detector diffractometer | 2656 independent reflections |
| Radiation source: fine-focus sealed tube | 2238 reflections with |
| graphite | |
| ω scans | θmax = 27.8°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 6411 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2656 reflections | (Δ/σ)max = 0.017 |
| 149 parameters | Δρmax = 0.96 e Å−3 |
| 26 restraints | Δρmin = −0.98 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Pd1 | 0.30571 (5) | −0.01089 (2) | 0.58087 (4) | 0.01686 (18) | |
| Cl15 | 0.40550 (17) | −0.08117 (7) | 0.79082 (15) | 0.0254 (3) | |
| Cl16 | 0.16329 (16) | −0.11300 (7) | 0.46964 (15) | 0.0238 (3) | |
| N2 | 0.2291 (5) | 0.0612 (2) | 0.4078 (5) | 0.0179 (9) | |
| N9 | 0.4236 (5) | 0.0838 (2) | 0.6682 (5) | 0.0167 (8) | |
| C1 | 0.2820 (6) | 0.1286 (3) | 0.4327 (6) | 0.0186 (10) | |
| H1 | 0.2521 | 0.1669 | 0.3590 | 0.022* | |
| C3 | 0.1145 (6) | 0.0400 (3) | 0.2666 (6) | 0.0211 (10) | |
| H3A | 0.1563 | −0.0078 | 0.2285 | 0.025* | |
| H3B | 0.0016 | 0.0298 | 0.2950 | 0.025* | |
| C10 | 0.3879 (6) | 0.1454 (3) | 0.5747 (6) | 0.0208 (10) | |
| C11 | 0.4519 (6) | 0.2153 (3) | 0.6190 (6) | 0.0218 (11) | |
| H11 | 0.4243 | 0.2577 | 0.5548 | 0.026* | |
| C12 | 0.5564 (7) | 0.2239 (3) | 0.7569 (6) | 0.0225 (11) | |
| H12 | 0.6009 | 0.2720 | 0.7881 | 0.027* | |
| C13 | 0.5949 (7) | 0.1613 (3) | 0.8484 (6) | 0.0219 (10) | |
| H13 | 0.6690 | 0.1653 | 0.9420 | 0.026* | |
| C14 | 0.5223 (6) | 0.0922 (3) | 0.8001 (6) | 0.0203 (10) | |
| H14 | 0.5449 | 0.0496 | 0.8647 | 0.024* | |
| S8A | −0.0145 (4) | 0.1806 (2) | 0.1442 (4) | 0.0239 (7)* | 0.50 |
| C4A | 0.095 (2) | 0.0978 (8) | 0.1389 (14) | 0.024 (9)* | 0.50 |
| C5A | 0.1525 (17) | 0.0901 (7) | −0.0021 (15) | 0.029 (4)* | 0.50 |
| H5A | 0.2128 | 0.0473 | −0.0287 | 0.035* | 0.50 |
| C6A | 0.1126 (18) | 0.1522 (8) | −0.1017 (14) | 0.018 (4)* | 0.50 |
| H6A | 0.1439 | 0.1564 | −0.2007 | 0.021* | 0.50 |
| C7A | 0.0239 (15) | 0.2047 (6) | −0.0361 (13) | 0.016 (3)* | 0.50 |
| H7A | −0.0137 | 0.2506 | −0.0848 | 0.019* | 0.50 |
| S8B | 0.1827 (5) | 0.07989 (19) | −0.0198 (4) | 0.0248 (8)* | 0.50 |
| C4B | 0.093 (3) | 0.0937 (10) | 0.1403 (18) | 0.011 (12)* | 0.50 |
| C5B | 0.0011 (15) | 0.1601 (7) | 0.1324 (13) | 0.025 (3)* | 0.50 |
| H5B | −0.0583 | 0.1773 | 0.2111 | 0.030* | 0.50 |
| C6B | 0.0055 (17) | 0.1999 (8) | −0.0075 (15) | 0.030 (4)* | 0.50 |
| H6B | −0.0496 | 0.2466 | −0.0327 | 0.036* | 0.50 |
| C7B | 0.098 (2) | 0.1628 (9) | −0.0980 (19) | 0.037 (6)* | 0.50 |
| H7B | 0.1144 | 0.1804 | −0.1959 | 0.045* | 0.50 |
| Pd1 | 0.0192 (3) | 0.0166 (3) | 0.0149 (3) | 0.00044 (13) | 0.00286 (17) | 0.00049 (13) |
| Cl15 | 0.0346 (7) | 0.0195 (6) | 0.0212 (7) | 0.0002 (5) | 0.0014 (5) | 0.0049 (5) |
| Cl16 | 0.0279 (7) | 0.0199 (6) | 0.0233 (7) | −0.0034 (5) | 0.0028 (5) | −0.0032 (5) |
| N2 | 0.016 (2) | 0.024 (2) | 0.014 (2) | 0.0025 (17) | 0.0029 (16) | 0.0014 (16) |
| N9 | 0.016 (2) | 0.019 (2) | 0.015 (2) | 0.0022 (15) | 0.0009 (16) | 0.0031 (15) |
| C1 | 0.022 (3) | 0.020 (2) | 0.014 (2) | 0.0006 (19) | 0.0036 (19) | 0.0013 (18) |
| C3 | 0.021 (3) | 0.021 (2) | 0.022 (3) | −0.002 (2) | 0.002 (2) | −0.003 (2) |
| C10 | 0.017 (2) | 0.023 (2) | 0.023 (3) | 0.0010 (19) | 0.004 (2) | 0.003 (2) |
| C11 | 0.024 (3) | 0.022 (2) | 0.019 (3) | −0.001 (2) | 0.003 (2) | 0.004 (2) |
| C12 | 0.028 (3) | 0.018 (2) | 0.021 (3) | 0.000 (2) | 0.005 (2) | −0.0017 (19) |
| C13 | 0.023 (3) | 0.027 (3) | 0.015 (2) | −0.002 (2) | −0.0009 (19) | −0.001 (2) |
| C14 | 0.021 (3) | 0.019 (2) | 0.022 (3) | −0.0049 (19) | 0.006 (2) | 0.003 (2) |
| Pd1—N2 | 2.024 (4) | C13—C14 | 1.400 (7) |
| Pd1—N9 | 2.027 (4) | C13—H13 | 0.9500 |
| Pd1—Cl15 | 2.2866 (13) | C14—H14 | 0.9500 |
| Pd1—Cl16 | 2.2885 (13) | S8A—C4A | 1.715 (13) |
| N2—C1 | 1.279 (6) | S8A—C7A | 1.725 (11) |
| N2—C3 | 1.489 (6) | C4A—C5A | 1.402 (14) |
| N9—C14 | 1.321 (7) | C5A—C6A | 1.420 (14) |
| N9—C10 | 1.378 (6) | C5A—H5A | 0.9500 |
| C1—C10 | 1.443 (7) | C6A—C7A | 1.354 (14) |
| C1—H1 | 0.9500 | C6A—H6A | 0.9500 |
| C3—C4B | 1.462 (13) | C7A—H7A | 0.9500 |
| C3—C4A | 1.519 (12) | S8B—C4B | 1.698 (14) |
| C3—H3A | 0.9900 | S8B—C7B | 1.726 (14) |
| C3—H3B | 0.9900 | C4B—C5B | 1.388 (15) |
| C10—C11 | 1.379 (7) | C5B—C6B | 1.432 (14) |
| C11—C12 | 1.386 (7) | C5B—H5B | 0.9500 |
| C11—H11 | 0.9500 | C6B—C7B | 1.340 (15) |
| C12—C13 | 1.385 (7) | C6B—H6B | 0.9500 |
| C12—H12 | 0.9500 | C7B—H7B | 0.9500 |
| N2—Pd1—N9 | 80.64 (16) | C12—C13—C14 | 118.6 (5) |
| N2—Pd1—Cl15 | 173.71 (12) | C12—C13—H13 | 120.7 |
| N9—Pd1—Cl15 | 93.10 (12) | C14—C13—H13 | 120.7 |
| N2—Pd1—Cl16 | 95.62 (13) | N9—C14—C13 | 122.6 (5) |
| N9—Pd1—Cl16 | 176.22 (11) | N9—C14—H14 | 118.7 |
| Cl15—Pd1—Cl16 | 90.63 (5) | C13—C14—H14 | 118.7 |
| C1—N2—C3 | 122.0 (4) | C4A—S8A—C7A | 91.6 (5) |
| C1—N2—Pd1 | 113.9 (3) | C5A—C4A—C3 | 125.9 (10) |
| C3—N2—Pd1 | 124.0 (3) | C5A—C4A—S8A | 110.1 (9) |
| C14—N9—C10 | 119.2 (4) | C3—C4A—S8A | 123.9 (8) |
| C14—N9—Pd1 | 128.1 (3) | C4A—C5A—C6A | 113.9 (11) |
| C10—N9—Pd1 | 112.7 (3) | C4A—C5A—H5A | 123.2 |
| N2—C1—C10 | 118.8 (4) | C6A—C5A—H5A | 122.9 |
| N2—C1—H1 | 120.6 | C7A—C6A—C5A | 110.7 (11) |
| C10—C1—H1 | 120.6 | C7A—C6A—H6A | 124.7 |
| C4B—C3—N2 | 117.9 (10) | C5A—C6A—H6A | 124.7 |
| N2—C3—C4A | 116.2 (8) | C6A—C7A—S8A | 113.7 (9) |
| C4B—C3—H3A | 108.0 | C6A—C7A—H7A | 123.2 |
| N2—C3—H3A | 107.8 | S8A—C7A—H7A | 123.1 |
| C4A—C3—H3A | 109.4 | C4B—S8B—C7B | 91.3 (7) |
| C4B—C3—H3B | 107.6 | C5B—C4B—C3 | 126.5 (11) |
| N2—C3—H3B | 107.8 | C5B—C4B—S8B | 111.5 (9) |
| C4A—C3—H3B | 108.1 | C3—C4B—S8B | 122.0 (10) |
| H3A—C3—H3B | 107.2 | C4B—C5B—C6B | 112.6 (11) |
| N9—C10—C11 | 120.6 (5) | C4B—C5B—H5B | 123.7 |
| N9—C10—C1 | 113.9 (4) | C6B—C5B—H5B | 123.7 |
| C11—C10—C1 | 125.6 (5) | C7B—C6B—C5B | 111.1 (12) |
| C10—C11—C12 | 120.2 (5) | C7B—C6B—H6B | 124.5 |
| C10—C11—H11 | 119.9 | C5B—C6B—H6B | 124.4 |
| C12—C11—H11 | 119.9 | C6B—C7B—S8B | 113.5 (11) |
| C13—C12—C11 | 118.8 (5) | C6B—C7B—H7B | 123.2 |
| C13—C12—H12 | 120.6 | S8B—C7B—H7B | 123.2 |
| C11—C12—H12 | 120.6 | ||
| N9—Pd1—N2—C1 | −1.8 (3) | Pd1—N9—C14—C13 | −179.1 (4) |
| Cl16—Pd1—N2—C1 | 177.6 (3) | C12—C13—C14—N9 | 2.5 (8) |
| N9—Pd1—N2—C3 | −178.8 (4) | C4B—C3—C4A—C5A | −50 (37) |
| Cl16—Pd1—N2—C3 | 0.6 (4) | N2—C3—C4A—C5A | 112.1 (13) |
| N2—Pd1—N9—C14 | −179.2 (4) | C4B—C3—C4A—S8A | 126 (39) |
| Cl15—Pd1—N9—C14 | 1.4 (4) | N2—C3—C4A—S8A | −71.9 (14) |
| N2—Pd1—N9—C10 | 2.5 (3) | C7A—S8A—C4A—C5A | −1.8 (10) |
| Cl15—Pd1—N9—C10 | −176.8 (3) | C7A—S8A—C4A—C3 | −178.4 (14) |
| C3—N2—C1—C10 | 177.8 (4) | C3—C4A—C5A—C6A | 178.5 (15) |
| Pd1—N2—C1—C10 | 0.7 (6) | S8A—C4A—C5A—C6A | 2.0 (13) |
| C1—N2—C3—C4B | 13.7 (10) | C4A—C5A—C6A—C7A | −1.0 (14) |
| Pd1—N2—C3—C4B | −169.5 (8) | C5A—C6A—C7A—S8A | −0.4 (13) |
| C1—N2—C3—C4A | 13.0 (8) | C4A—S8A—C7A—C6A | 1.3 (11) |
| Pd1—N2—C3—C4A | −170.2 (6) | N2—C3—C4B—C5B | −74 (2) |
| C14—N9—C10—C11 | −1.0 (7) | C4A—C3—C4B—C5B | −56 (37) |
| Pd1—N9—C10—C11 | 177.4 (4) | N2—C3—C4B—S8B | 106.1 (15) |
| C14—N9—C10—C1 | 178.7 (4) | C4A—C3—C4B—S8B | 124 (39) |
| Pd1—N9—C10—C1 | −2.9 (5) | C7B—S8B—C4B—C5B | 0.0 (14) |
| N2—C1—C10—N9 | 1.5 (7) | C7B—S8B—C4B—C3 | 179.7 (18) |
| N2—C1—C10—C11 | −178.7 (5) | C3—C4B—C5B—C6B | −179.9 (19) |
| N9—C10—C11—C12 | 1.5 (8) | S8B—C4B—C5B—C6B | −0.2 (15) |
| C1—C10—C11—C12 | −178.2 (5) | C4B—C5B—C6B—C7B | 0.4 (15) |
| C10—C11—C12—C13 | 0.0 (8) | C5B—C6B—C7B—S8B | −0.4 (17) |
| C11—C12—C13—C14 | −2.0 (8) | C4B—S8B—C7B—C6B | 0.2 (16) |
| C10—N9—C14—C13 | −1.0 (7) |
| H··· | ||||
| C12—H12···Cl15i | 0.95 | 2.70 | 3.508 (6) | 143 |
| C6B—H6B···Cl16ii | 0.95 | 2.74 | 3.622 (14) | 155 |
| C7A—H7A···S8Aiii | 0.95 | 2.69 | 3.468 (12) | 139 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C12—H12⋯Cl15i | 0.95 | 2.70 | 3.508 (6) | 143 |
| C6 | 0.95 | 2.74 | 3.622 (14) | 155 |
| C7 | 0.95 | 2.69 | 3.468 (12) | 139 |
Symmetry codes: (i) ; (ii) ; (iii) .