Literature DB >> 23476297

Methyl 6-oxo-4-phenyl-2-[(Z)-2-(pyridin-2-yl)ethen-yl]-1,4,5,6-tetra-hydro-pyridine-3-carboxyl-ate.

Rufus Smits1, Sergey Belyakov, Brigita Vigante, Gunars Duburs.   

Abstract

In the title mol-ecule, C20H18N2O3, an intra-molecular N-H⋯O hydrogen bond leads to a cis conformation of the pyridinyl-vinyl fragment. The phenyl and pyridine rings are inclined to one another by 77.3 (1) °. In the crystal, mol-ecules are linked via pairs of C-H⋯O hydrogen bonds, forming inversion dimers. The dimers are linked by C-H⋯O hydrogen bonds and C-H⋯π inter-actions, forming a three-dimensional structure.

Entities:  

Year:  2012        PMID: 23476297      PMCID: PMC3589061          DOI: 10.1107/S1600536812048532

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of dihydro­pyridones, see: Dong et al. (2005 ▶); Elias et al. (2008 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C20H18N2O3 M = 334.36 Monoclinic, a = 5.5746 (2) Å b = 16.4083 (6) Å c = 18.0930 (8) Å β = 96.5018 (14)° V = 1644.32 (11) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 193 K 0.41 × 0.12 × 0.07 mm

Data collection

Bruker–Nonius KappaCCD diffractometer 7024 measured reflections 4206 independent reflections 2483 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.149 S = 0.96 4206 reflections 242 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.22 e Å−3 Data collection: KappaCCD Server Software (Nonius, 1999 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: maXus (Mackay et al., 1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812048532/cv5365sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048532/cv5365Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812048532/cv5365Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18N2O3Dx = 1.351 Mg m3
Mr = 334.36Melting point: 504 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 5.5746 (2) ÅCell parameters from 2317 reflections
b = 16.4083 (6) Åθ = 0.9–27.5°
c = 18.0930 (8) ŵ = 0.09 mm1
β = 96.5018 (14)°T = 193 K
V = 1644.32 (11) Å3Needle, colourless
Z = 40.41 × 0.12 × 0.07 mm
F(000) = 704
Bruker–Nonius KappaCCD diffractometer2483 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.053
Graphite monochromatorθmax = 28.6°, θmin = 1.6°
φ and ω scanh = −7→7
7024 measured reflectionsk = −20→22
4206 independent reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.149w = 1/[σ2(Fo2) + (0.0562P)2 + 0.7901P] where P = (Fo2 + 2Fc2)/3
S = 0.96(Δ/σ)max = 0.019
4206 reflectionsΔρmax = 0.23 e Å3
242 parametersΔρmin = −0.22 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3841 (3)0.31397 (11)0.68159 (10)0.0317 (4)
H10.249 (4)0.3452 (16)0.6900 (13)0.050 (7)*
C20.4865 (4)0.26644 (13)0.73871 (12)0.0343 (5)
C30.7199 (4)0.22630 (13)0.72613 (12)0.0349 (5)
H3A0.73850.17710.75590.042*
H3B0.85190.26260.74330.042*
C40.7383 (3)0.20413 (12)0.64446 (11)0.0281 (5)
H40.910 (4)0.1941 (13)0.6403 (11)0.030 (5)*
C50.6556 (3)0.27567 (12)0.59458 (11)0.0275 (4)
C60.4830 (3)0.32727 (12)0.61506 (11)0.0281 (4)
O70.3935 (3)0.26137 (10)0.79683 (9)0.0471 (4)
C80.6075 (3)0.12466 (12)0.62263 (11)0.0266 (4)
C90.7212 (4)0.05100 (13)0.64153 (13)0.0357 (5)
H90.87570.05100.66710.043*
C100.6078 (4)−0.02244 (14)0.62283 (14)0.0429 (6)
H100.6862−0.07120.63600.052*
C110.3794 (4)−0.02351 (14)0.58485 (13)0.0442 (6)
H110.3044−0.07280.57150.053*
C120.2630 (4)0.04892 (15)0.56682 (13)0.0411 (5)
H120.10780.04840.54180.049*
C130.3754 (4)0.12274 (13)0.58566 (12)0.0327 (5)
H130.29450.17130.57340.039*
C140.7626 (4)0.28495 (13)0.52436 (12)0.0320 (5)
O150.7451 (4)0.34235 (11)0.48210 (12)0.0704 (6)
O160.8913 (3)0.21953 (9)0.50878 (8)0.0371 (4)
C171.0023 (4)0.22380 (15)0.44055 (13)0.0441 (6)
H17A1.09040.17450.43440.053*
H17B1.11070.26940.44260.053*
H17C0.87950.23040.39930.053*
C180.3926 (4)0.39772 (13)0.57107 (13)0.0357 (5)
H180.468 (4)0.4026 (15)0.5270 (14)0.043 (6)*
C190.2314 (4)0.45687 (14)0.58015 (13)0.0378 (5)
H190.219 (4)0.4957 (15)0.5424 (14)0.045 (7)*
C200.0609 (4)0.47713 (12)0.63325 (12)0.0323 (5)
N210.0217 (3)0.42656 (10)0.68919 (10)0.0313 (4)
C22−0.1441 (4)0.44794 (13)0.73342 (12)0.0348 (5)
H22−0.17080.41310.77220.042*
C23−0.2784 (4)0.51884 (14)0.72480 (13)0.0398 (5)
H23−0.39420.53070.75640.048*
C24−0.2370 (4)0.57122 (14)0.66859 (14)0.0429 (6)
H24−0.32290.61970.66160.052*
C25−0.0651 (4)0.55059 (14)0.62245 (13)0.0400 (5)
H25−0.03330.58550.58430.048*
U11U22U33U12U13U23
N10.0379 (9)0.0272 (9)0.0312 (10)0.0031 (8)0.0090 (7)0.0037 (8)
C20.0473 (12)0.0256 (11)0.0303 (12)−0.0044 (9)0.0058 (9)−0.0001 (9)
C30.0420 (12)0.0286 (11)0.0321 (12)−0.0019 (9)−0.0040 (9)0.0029 (9)
C40.0249 (10)0.0252 (10)0.0338 (12)0.0011 (8)0.0016 (8)0.0029 (9)
C50.0270 (9)0.0234 (10)0.0316 (11)−0.0020 (8)0.0013 (8)0.0019 (8)
C60.0302 (10)0.0258 (10)0.0284 (11)−0.0023 (8)0.0031 (8)0.0019 (8)
O70.0687 (11)0.0392 (9)0.0355 (9)0.0043 (8)0.0157 (8)0.0077 (7)
C80.0288 (10)0.0251 (10)0.0273 (10)0.0023 (8)0.0097 (8)0.0012 (8)
C90.0344 (11)0.0308 (11)0.0437 (13)0.0054 (9)0.0116 (9)0.0019 (10)
C100.0577 (15)0.0250 (11)0.0505 (15)0.0047 (10)0.0256 (12)0.0005 (10)
C110.0577 (15)0.0345 (13)0.0444 (14)−0.0161 (11)0.0233 (12)−0.0118 (11)
C120.0380 (12)0.0459 (14)0.0397 (13)−0.0108 (11)0.0061 (9)−0.0067 (11)
C130.0313 (10)0.0321 (11)0.0348 (12)−0.0009 (9)0.0045 (8)−0.0003 (9)
C140.0327 (10)0.0263 (11)0.0377 (12)0.0021 (9)0.0074 (9)0.0029 (9)
O150.0974 (15)0.0479 (11)0.0770 (14)0.0346 (10)0.0584 (12)0.0312 (10)
O160.0439 (8)0.0318 (8)0.0377 (9)0.0096 (7)0.0129 (7)0.0041 (7)
C170.0530 (14)0.0389 (13)0.0432 (14)0.0117 (11)0.0183 (11)0.0049 (11)
C180.0422 (12)0.0329 (12)0.0339 (13)0.0065 (10)0.0132 (10)0.0072 (10)
C190.0449 (12)0.0332 (12)0.0375 (13)0.0080 (10)0.0139 (10)0.0106 (11)
C200.0379 (11)0.0279 (11)0.0316 (12)−0.0015 (9)0.0069 (9)−0.0019 (9)
N210.0373 (9)0.0262 (9)0.0315 (10)−0.0027 (7)0.0081 (7)−0.0007 (7)
C220.0419 (11)0.0319 (11)0.0319 (12)−0.0051 (10)0.0098 (9)−0.0028 (9)
C230.0431 (12)0.0377 (13)0.0406 (13)0.0009 (10)0.0142 (10)−0.0060 (11)
C240.0520 (13)0.0318 (12)0.0470 (15)0.0113 (10)0.0141 (11)0.0005 (11)
C250.0511 (13)0.0293 (11)0.0418 (13)0.0069 (10)0.0143 (10)0.0056 (10)
N1—C21.367 (3)C12—H120.9300
N1—C61.397 (3)C13—H130.9300
N1—H10.94 (3)C14—O151.210 (3)
C2—O71.227 (3)C14—O161.339 (2)
C2—C31.498 (3)O16—C171.444 (3)
C3—C41.537 (3)C17—H17A0.9600
C3—H3A0.9700C17—H17B0.9600
C3—H3B0.9700C17—H17C0.9600
C4—C51.520 (3)C18—C191.345 (3)
C4—C81.524 (3)C18—H180.95 (2)
C4—H40.98 (2)C19—C201.465 (3)
C5—C61.364 (3)C19—H190.93 (3)
C5—C141.471 (3)C20—N211.346 (3)
C6—C181.460 (3)C20—C251.398 (3)
C8—C131.388 (3)N21—C221.337 (3)
C8—C91.389 (3)C22—C231.383 (3)
C9—C101.385 (3)C22—H220.9300
C9—H90.9300C23—C241.371 (3)
C10—C111.377 (3)C23—H230.9300
C10—H100.9300C24—C251.382 (3)
C11—C121.375 (3)C24—H240.9300
C11—H110.9300C25—H250.9300
C12—C131.388 (3)
C2—N1—C6124.69 (18)C11—C12—H12119.7
C2—N1—H1117.6 (15)C13—C12—H12119.7
C6—N1—H1117.2 (15)C8—C13—C12120.6 (2)
O7—C2—N1120.4 (2)C8—C13—H13119.7
O7—C2—C3124.0 (2)C12—C13—H13119.7
N1—C2—C3115.55 (19)O15—C14—O16119.9 (2)
C2—C3—C4113.83 (17)O15—C14—C5127.9 (2)
C2—C3—H3A108.8O16—C14—C5112.22 (17)
C4—C3—H3A108.8C14—O16—C17115.65 (17)
C2—C3—H3B108.8O16—C17—H17A109.5
C4—C3—H3B108.8O16—C17—H17B109.5
H3A—C3—H3B107.7H17A—C17—H17B109.5
C5—C4—C8113.75 (16)O16—C17—H17C109.5
C5—C4—C3109.83 (17)H17A—C17—H17C109.5
C8—C4—C3111.70 (16)H17B—C17—H17C109.5
C5—C4—H4108.5 (12)C19—C18—C6134.3 (2)
C8—C4—H4106.1 (12)C19—C18—H18114.0 (15)
C3—C4—H4106.6 (12)C6—C18—H18111.6 (15)
C6—C5—C14122.53 (18)C18—C19—C20137.4 (2)
C6—C5—C4119.60 (18)C18—C19—H19113.4 (15)
C14—C5—C4117.85 (17)C20—C19—H19109.1 (15)
C5—C6—N1119.77 (18)N21—C20—C25121.03 (19)
C5—C6—C18123.61 (19)N21—C20—C19121.74 (19)
N1—C6—C18116.62 (18)C25—C20—C19117.21 (19)
C13—C8—C9118.24 (19)C22—N21—C20118.07 (18)
C13—C8—C4122.47 (17)N21—C22—C23123.8 (2)
C9—C8—C4119.28 (17)N21—C22—H22118.1
C10—C9—C8120.9 (2)C23—C22—H22118.1
C10—C9—H9119.5C24—C23—C22118.5 (2)
C8—C9—H9119.5C24—C23—H23120.8
C11—C10—C9120.3 (2)C22—C23—H23120.8
C11—C10—H10119.9C23—C24—C25118.8 (2)
C9—C10—H10119.9C23—C24—H24120.6
C12—C11—C10119.5 (2)C25—C24—H24120.6
C12—C11—H11120.3C24—C25—C20119.9 (2)
C10—C11—H11120.3C24—C25—H25120.1
C11—C12—C13120.5 (2)C20—C25—H25120.1
C6—N1—C2—O7176.29 (19)C10—C11—C12—C130.9 (3)
C6—N1—C2—C3−0.7 (3)C9—C8—C13—C12−1.4 (3)
O7—C2—C3—C4151.0 (2)C4—C8—C13—C12179.99 (19)
N1—C2—C3—C4−32.2 (3)C11—C12—C13—C80.4 (3)
C2—C3—C4—C546.1 (2)C6—C5—C14—O1511.9 (4)
C2—C3—C4—C8−81.1 (2)C4—C5—C14—O15−169.8 (2)
C8—C4—C5—C695.1 (2)C6—C5—C14—O16−167.78 (17)
C3—C4—C5—C6−30.9 (2)C4—C5—C14—O1610.6 (2)
C8—C4—C5—C14−83.3 (2)O15—C14—O16—C170.2 (3)
C3—C4—C5—C14150.69 (18)C5—C14—O16—C17179.93 (18)
C14—C5—C6—N1178.39 (18)C5—C6—C18—C19−178.3 (2)
C4—C5—C6—N10.1 (3)N1—C6—C18—C191.3 (4)
C14—C5—C6—C18−1.9 (3)C6—C18—C19—C20−4.9 (5)
C4—C5—C6—C18179.75 (18)C18—C19—C20—N21−5.5 (4)
C2—N1—C6—C518.1 (3)C18—C19—C20—C25176.1 (3)
C2—N1—C6—C18−161.56 (19)C25—C20—N21—C221.1 (3)
C5—C4—C8—C13−27.0 (3)C19—C20—N21—C22−177.3 (2)
C3—C4—C8—C1398.1 (2)C20—N21—C22—C230.3 (3)
C5—C4—C8—C9154.43 (19)N21—C22—C23—C24−1.2 (3)
C3—C4—C8—C9−80.6 (2)C22—C23—C24—C250.7 (3)
C13—C8—C9—C101.1 (3)C23—C24—C25—C200.6 (4)
C4—C8—C9—C10179.8 (2)N21—C20—C25—C24−1.6 (3)
C8—C9—C10—C110.1 (3)C19—C20—C25—C24176.9 (2)
C9—C10—C11—C12−1.2 (3)
D—H···AD—HH···AD···AD—H···A
C25—H25···O15i0.932.423.257 (3)150
C24—H24···O7ii0.932.493.318 (3)149
C13—H13···O16iii0.932.543.300 (3)139
C19—H19···O15i0.93 (3)2.71 (3)3.489 (3)142 (2)
C23—H23···Cgii0.932.663.480147
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C8–C13 phenyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C25—H25⋯O15i 0.932.423.257 (3)150
C24—H24⋯O7ii 0.932.493.318 (3)149
C13—H13⋯O16iii 0.932.543.300 (3)139
C23—H23⋯Cg ii 0.932.663.480147

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

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