| Literature DB >> 23476297 |
Rufus Smits1, Sergey Belyakov, Brigita Vigante, Gunars Duburs.
Abstract
In the title mol-ecule, C20H18N2O3, an intra-molecular N-H⋯O hydrogen bond leads to a cis conformation of the pyridinyl-vinyl fragment. The phenyl and pyridine rings are inclined to one another by 77.3 (1) °. In the crystal, mol-ecules are linked via pairs of C-H⋯O hydrogen bonds, forming inversion dimers. The dimers are linked by C-H⋯O hydrogen bonds and C-H⋯π inter-actions, forming a three-dimensional structure.Entities:
Year: 2012 PMID: 23476297 PMCID: PMC3589061 DOI: 10.1107/S1600536812048532
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H18N2O3 | |
| Melting point: 504 K | |
| Monoclinic, | Mo |
| Cell parameters from 2317 reflections | |
| θ = 0.9–27.5° | |
| µ = 0.09 mm−1 | |
| β = 96.5018 (14)° | |
| Needle, colourless | |
| 0.41 × 0.12 × 0.07 mm | |
| Bruker–Nonius KappaCCD diffractometer | 2483 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 28.6°, θmin = 1.6° |
| φ and ω scan | |
| 7024 measured reflections | |
| 4206 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.019 | |
| 4206 reflections | Δρmax = 0.23 e Å−3 |
| 242 parameters | Δρmin = −0.22 e Å−3 |
| 0 restraints |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.3841 (3) | 0.31397 (11) | 0.68159 (10) | 0.0317 (4) | |
| H1 | 0.249 (4) | 0.3452 (16) | 0.6900 (13) | 0.050 (7)* | |
| C2 | 0.4865 (4) | 0.26644 (13) | 0.73871 (12) | 0.0343 (5) | |
| C3 | 0.7199 (4) | 0.22630 (13) | 0.72613 (12) | 0.0349 (5) | |
| H3A | 0.7385 | 0.1771 | 0.7559 | 0.042* | |
| H3B | 0.8519 | 0.2626 | 0.7433 | 0.042* | |
| C4 | 0.7383 (3) | 0.20413 (12) | 0.64446 (11) | 0.0281 (5) | |
| H4 | 0.910 (4) | 0.1941 (13) | 0.6403 (11) | 0.030 (5)* | |
| C5 | 0.6556 (3) | 0.27567 (12) | 0.59458 (11) | 0.0275 (4) | |
| C6 | 0.4830 (3) | 0.32727 (12) | 0.61506 (11) | 0.0281 (4) | |
| O7 | 0.3935 (3) | 0.26137 (10) | 0.79683 (9) | 0.0471 (4) | |
| C8 | 0.6075 (3) | 0.12466 (12) | 0.62263 (11) | 0.0266 (4) | |
| C9 | 0.7212 (4) | 0.05100 (13) | 0.64153 (13) | 0.0357 (5) | |
| H9 | 0.8757 | 0.0510 | 0.6671 | 0.043* | |
| C10 | 0.6078 (4) | −0.02244 (14) | 0.62283 (14) | 0.0429 (6) | |
| H10 | 0.6862 | −0.0712 | 0.6360 | 0.052* | |
| C11 | 0.3794 (4) | −0.02351 (14) | 0.58485 (13) | 0.0442 (6) | |
| H11 | 0.3044 | −0.0728 | 0.5715 | 0.053* | |
| C12 | 0.2630 (4) | 0.04892 (15) | 0.56682 (13) | 0.0411 (5) | |
| H12 | 0.1078 | 0.0484 | 0.5418 | 0.049* | |
| C13 | 0.3754 (4) | 0.12274 (13) | 0.58566 (12) | 0.0327 (5) | |
| H13 | 0.2945 | 0.1713 | 0.5734 | 0.039* | |
| C14 | 0.7626 (4) | 0.28495 (13) | 0.52436 (12) | 0.0320 (5) | |
| O15 | 0.7451 (4) | 0.34235 (11) | 0.48210 (12) | 0.0704 (6) | |
| O16 | 0.8913 (3) | 0.21953 (9) | 0.50878 (8) | 0.0371 (4) | |
| C17 | 1.0023 (4) | 0.22380 (15) | 0.44055 (13) | 0.0441 (6) | |
| H17A | 1.0904 | 0.1745 | 0.4344 | 0.053* | |
| H17B | 1.1107 | 0.2694 | 0.4426 | 0.053* | |
| H17C | 0.8795 | 0.2304 | 0.3993 | 0.053* | |
| C18 | 0.3926 (4) | 0.39772 (13) | 0.57107 (13) | 0.0357 (5) | |
| H18 | 0.468 (4) | 0.4026 (15) | 0.5270 (14) | 0.043 (6)* | |
| C19 | 0.2314 (4) | 0.45687 (14) | 0.58015 (13) | 0.0378 (5) | |
| H19 | 0.219 (4) | 0.4957 (15) | 0.5424 (14) | 0.045 (7)* | |
| C20 | 0.0609 (4) | 0.47713 (12) | 0.63325 (12) | 0.0323 (5) | |
| N21 | 0.0217 (3) | 0.42656 (10) | 0.68919 (10) | 0.0313 (4) | |
| C22 | −0.1441 (4) | 0.44794 (13) | 0.73342 (12) | 0.0348 (5) | |
| H22 | −0.1708 | 0.4131 | 0.7722 | 0.042* | |
| C23 | −0.2784 (4) | 0.51884 (14) | 0.72480 (13) | 0.0398 (5) | |
| H23 | −0.3942 | 0.5307 | 0.7564 | 0.048* | |
| C24 | −0.2370 (4) | 0.57122 (14) | 0.66859 (14) | 0.0429 (6) | |
| H24 | −0.3229 | 0.6197 | 0.6616 | 0.052* | |
| C25 | −0.0651 (4) | 0.55059 (14) | 0.62245 (13) | 0.0400 (5) | |
| H25 | −0.0333 | 0.5855 | 0.5843 | 0.048* |
| N1 | 0.0379 (9) | 0.0272 (9) | 0.0312 (10) | 0.0031 (8) | 0.0090 (7) | 0.0037 (8) |
| C2 | 0.0473 (12) | 0.0256 (11) | 0.0303 (12) | −0.0044 (9) | 0.0058 (9) | −0.0001 (9) |
| C3 | 0.0420 (12) | 0.0286 (11) | 0.0321 (12) | −0.0019 (9) | −0.0040 (9) | 0.0029 (9) |
| C4 | 0.0249 (10) | 0.0252 (10) | 0.0338 (12) | 0.0011 (8) | 0.0016 (8) | 0.0029 (9) |
| C5 | 0.0270 (9) | 0.0234 (10) | 0.0316 (11) | −0.0020 (8) | 0.0013 (8) | 0.0019 (8) |
| C6 | 0.0302 (10) | 0.0258 (10) | 0.0284 (11) | −0.0023 (8) | 0.0031 (8) | 0.0019 (8) |
| O7 | 0.0687 (11) | 0.0392 (9) | 0.0355 (9) | 0.0043 (8) | 0.0157 (8) | 0.0077 (7) |
| C8 | 0.0288 (10) | 0.0251 (10) | 0.0273 (10) | 0.0023 (8) | 0.0097 (8) | 0.0012 (8) |
| C9 | 0.0344 (11) | 0.0308 (11) | 0.0437 (13) | 0.0054 (9) | 0.0116 (9) | 0.0019 (10) |
| C10 | 0.0577 (15) | 0.0250 (11) | 0.0505 (15) | 0.0047 (10) | 0.0256 (12) | 0.0005 (10) |
| C11 | 0.0577 (15) | 0.0345 (13) | 0.0444 (14) | −0.0161 (11) | 0.0233 (12) | −0.0118 (11) |
| C12 | 0.0380 (12) | 0.0459 (14) | 0.0397 (13) | −0.0108 (11) | 0.0061 (9) | −0.0067 (11) |
| C13 | 0.0313 (10) | 0.0321 (11) | 0.0348 (12) | −0.0009 (9) | 0.0045 (8) | −0.0003 (9) |
| C14 | 0.0327 (10) | 0.0263 (11) | 0.0377 (12) | 0.0021 (9) | 0.0074 (9) | 0.0029 (9) |
| O15 | 0.0974 (15) | 0.0479 (11) | 0.0770 (14) | 0.0346 (10) | 0.0584 (12) | 0.0312 (10) |
| O16 | 0.0439 (8) | 0.0318 (8) | 0.0377 (9) | 0.0096 (7) | 0.0129 (7) | 0.0041 (7) |
| C17 | 0.0530 (14) | 0.0389 (13) | 0.0432 (14) | 0.0117 (11) | 0.0183 (11) | 0.0049 (11) |
| C18 | 0.0422 (12) | 0.0329 (12) | 0.0339 (13) | 0.0065 (10) | 0.0132 (10) | 0.0072 (10) |
| C19 | 0.0449 (12) | 0.0332 (12) | 0.0375 (13) | 0.0080 (10) | 0.0139 (10) | 0.0106 (11) |
| C20 | 0.0379 (11) | 0.0279 (11) | 0.0316 (12) | −0.0015 (9) | 0.0069 (9) | −0.0019 (9) |
| N21 | 0.0373 (9) | 0.0262 (9) | 0.0315 (10) | −0.0027 (7) | 0.0081 (7) | −0.0007 (7) |
| C22 | 0.0419 (11) | 0.0319 (11) | 0.0319 (12) | −0.0051 (10) | 0.0098 (9) | −0.0028 (9) |
| C23 | 0.0431 (12) | 0.0377 (13) | 0.0406 (13) | 0.0009 (10) | 0.0142 (10) | −0.0060 (11) |
| C24 | 0.0520 (13) | 0.0318 (12) | 0.0470 (15) | 0.0113 (10) | 0.0141 (11) | 0.0005 (11) |
| C25 | 0.0511 (13) | 0.0293 (11) | 0.0418 (13) | 0.0069 (10) | 0.0143 (10) | 0.0056 (10) |
| N1—C2 | 1.367 (3) | C12—H12 | 0.9300 |
| N1—C6 | 1.397 (3) | C13—H13 | 0.9300 |
| N1—H1 | 0.94 (3) | C14—O15 | 1.210 (3) |
| C2—O7 | 1.227 (3) | C14—O16 | 1.339 (2) |
| C2—C3 | 1.498 (3) | O16—C17 | 1.444 (3) |
| C3—C4 | 1.537 (3) | C17—H17A | 0.9600 |
| C3—H3A | 0.9700 | C17—H17B | 0.9600 |
| C3—H3B | 0.9700 | C17—H17C | 0.9600 |
| C4—C5 | 1.520 (3) | C18—C19 | 1.345 (3) |
| C4—C8 | 1.524 (3) | C18—H18 | 0.95 (2) |
| C4—H4 | 0.98 (2) | C19—C20 | 1.465 (3) |
| C5—C6 | 1.364 (3) | C19—H19 | 0.93 (3) |
| C5—C14 | 1.471 (3) | C20—N21 | 1.346 (3) |
| C6—C18 | 1.460 (3) | C20—C25 | 1.398 (3) |
| C8—C13 | 1.388 (3) | N21—C22 | 1.337 (3) |
| C8—C9 | 1.389 (3) | C22—C23 | 1.383 (3) |
| C9—C10 | 1.385 (3) | C22—H22 | 0.9300 |
| C9—H9 | 0.9300 | C23—C24 | 1.371 (3) |
| C10—C11 | 1.377 (3) | C23—H23 | 0.9300 |
| C10—H10 | 0.9300 | C24—C25 | 1.382 (3) |
| C11—C12 | 1.375 (3) | C24—H24 | 0.9300 |
| C11—H11 | 0.9300 | C25—H25 | 0.9300 |
| C12—C13 | 1.388 (3) | ||
| C2—N1—C6 | 124.69 (18) | C11—C12—H12 | 119.7 |
| C2—N1—H1 | 117.6 (15) | C13—C12—H12 | 119.7 |
| C6—N1—H1 | 117.2 (15) | C8—C13—C12 | 120.6 (2) |
| O7—C2—N1 | 120.4 (2) | C8—C13—H13 | 119.7 |
| O7—C2—C3 | 124.0 (2) | C12—C13—H13 | 119.7 |
| N1—C2—C3 | 115.55 (19) | O15—C14—O16 | 119.9 (2) |
| C2—C3—C4 | 113.83 (17) | O15—C14—C5 | 127.9 (2) |
| C2—C3—H3A | 108.8 | O16—C14—C5 | 112.22 (17) |
| C4—C3—H3A | 108.8 | C14—O16—C17 | 115.65 (17) |
| C2—C3—H3B | 108.8 | O16—C17—H17A | 109.5 |
| C4—C3—H3B | 108.8 | O16—C17—H17B | 109.5 |
| H3A—C3—H3B | 107.7 | H17A—C17—H17B | 109.5 |
| C5—C4—C8 | 113.75 (16) | O16—C17—H17C | 109.5 |
| C5—C4—C3 | 109.83 (17) | H17A—C17—H17C | 109.5 |
| C8—C4—C3 | 111.70 (16) | H17B—C17—H17C | 109.5 |
| C5—C4—H4 | 108.5 (12) | C19—C18—C6 | 134.3 (2) |
| C8—C4—H4 | 106.1 (12) | C19—C18—H18 | 114.0 (15) |
| C3—C4—H4 | 106.6 (12) | C6—C18—H18 | 111.6 (15) |
| C6—C5—C14 | 122.53 (18) | C18—C19—C20 | 137.4 (2) |
| C6—C5—C4 | 119.60 (18) | C18—C19—H19 | 113.4 (15) |
| C14—C5—C4 | 117.85 (17) | C20—C19—H19 | 109.1 (15) |
| C5—C6—N1 | 119.77 (18) | N21—C20—C25 | 121.03 (19) |
| C5—C6—C18 | 123.61 (19) | N21—C20—C19 | 121.74 (19) |
| N1—C6—C18 | 116.62 (18) | C25—C20—C19 | 117.21 (19) |
| C13—C8—C9 | 118.24 (19) | C22—N21—C20 | 118.07 (18) |
| C13—C8—C4 | 122.47 (17) | N21—C22—C23 | 123.8 (2) |
| C9—C8—C4 | 119.28 (17) | N21—C22—H22 | 118.1 |
| C10—C9—C8 | 120.9 (2) | C23—C22—H22 | 118.1 |
| C10—C9—H9 | 119.5 | C24—C23—C22 | 118.5 (2) |
| C8—C9—H9 | 119.5 | C24—C23—H23 | 120.8 |
| C11—C10—C9 | 120.3 (2) | C22—C23—H23 | 120.8 |
| C11—C10—H10 | 119.9 | C23—C24—C25 | 118.8 (2) |
| C9—C10—H10 | 119.9 | C23—C24—H24 | 120.6 |
| C12—C11—C10 | 119.5 (2) | C25—C24—H24 | 120.6 |
| C12—C11—H11 | 120.3 | C24—C25—C20 | 119.9 (2) |
| C10—C11—H11 | 120.3 | C24—C25—H25 | 120.1 |
| C11—C12—C13 | 120.5 (2) | C20—C25—H25 | 120.1 |
| C6—N1—C2—O7 | 176.29 (19) | C10—C11—C12—C13 | 0.9 (3) |
| C6—N1—C2—C3 | −0.7 (3) | C9—C8—C13—C12 | −1.4 (3) |
| O7—C2—C3—C4 | 151.0 (2) | C4—C8—C13—C12 | 179.99 (19) |
| N1—C2—C3—C4 | −32.2 (3) | C11—C12—C13—C8 | 0.4 (3) |
| C2—C3—C4—C5 | 46.1 (2) | C6—C5—C14—O15 | 11.9 (4) |
| C2—C3—C4—C8 | −81.1 (2) | C4—C5—C14—O15 | −169.8 (2) |
| C8—C4—C5—C6 | 95.1 (2) | C6—C5—C14—O16 | −167.78 (17) |
| C3—C4—C5—C6 | −30.9 (2) | C4—C5—C14—O16 | 10.6 (2) |
| C8—C4—C5—C14 | −83.3 (2) | O15—C14—O16—C17 | 0.2 (3) |
| C3—C4—C5—C14 | 150.69 (18) | C5—C14—O16—C17 | 179.93 (18) |
| C14—C5—C6—N1 | 178.39 (18) | C5—C6—C18—C19 | −178.3 (2) |
| C4—C5—C6—N1 | 0.1 (3) | N1—C6—C18—C19 | 1.3 (4) |
| C14—C5—C6—C18 | −1.9 (3) | C6—C18—C19—C20 | −4.9 (5) |
| C4—C5—C6—C18 | 179.75 (18) | C18—C19—C20—N21 | −5.5 (4) |
| C2—N1—C6—C5 | 18.1 (3) | C18—C19—C20—C25 | 176.1 (3) |
| C2—N1—C6—C18 | −161.56 (19) | C25—C20—N21—C22 | 1.1 (3) |
| C5—C4—C8—C13 | −27.0 (3) | C19—C20—N21—C22 | −177.3 (2) |
| C3—C4—C8—C13 | 98.1 (2) | C20—N21—C22—C23 | 0.3 (3) |
| C5—C4—C8—C9 | 154.43 (19) | N21—C22—C23—C24 | −1.2 (3) |
| C3—C4—C8—C9 | −80.6 (2) | C22—C23—C24—C25 | 0.7 (3) |
| C13—C8—C9—C10 | 1.1 (3) | C23—C24—C25—C20 | 0.6 (4) |
| C4—C8—C9—C10 | 179.8 (2) | N21—C20—C25—C24 | −1.6 (3) |
| C8—C9—C10—C11 | 0.1 (3) | C19—C20—C25—C24 | 176.9 (2) |
| C9—C10—C11—C12 | −1.2 (3) |
| H··· | ||||
| C25—H25···O15i | 0.93 | 2.42 | 3.257 (3) | 150 |
| C24—H24···O7ii | 0.93 | 2.49 | 3.318 (3) | 149 |
| C13—H13···O16iii | 0.93 | 2.54 | 3.300 (3) | 139 |
| C19—H19···O15i | 0.93 (3) | 2.71 (3) | 3.489 (3) | 142 (2) |
| C23—H23··· | 0.93 | 2.66 | 3.480 | 147 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C8–C13 phenyl ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C25—H25⋯O15i | 0.93 | 2.42 | 3.257 (3) | 150 |
| C24—H24⋯O7ii | 0.93 | 2.49 | 3.318 (3) | 149 |
| C13—H13⋯O16iii | 0.93 | 2.54 | 3.300 (3) | 139 |
| C23—H23⋯ | 0.93 | 2.66 | 3.480 | 147 |
Symmetry codes: (i) ; (ii) ; (iii) .