Literature DB >> 23476291

1-(2-Chloro-benzo-yl)-3-(2,3-dimethyl-phen-yl)thio-urea.

M Khawar Rauf1, Masahiro Ebihara, Amin Badshah.   

Abstract

The dihedral angle between the two phenyl groups in the title compound, C16H15ClN2OS, is 14.88 (4)°. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, pairs of N-H⋯S hydrogen bonds link the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2012        PMID: 23476291      PMCID: PMC3589055          DOI: 10.1107/S1600536812048209

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and a related structure, see: Rauf et al. (2012 ▶). For a description of the Cambridge Structural Database, see: Allen et al. (2002 ▶).

Experimental

Crystal data

C16H15ClN2OS M = 318.81 Triclinic, a = 7.489 (3) Å b = 9.338 (4) Å c = 13.274 (5) Å α = 65.674 (13)° β = 69.975 (16)° γ = 73.639 (17)° V = 783.9 (5) Å3 Z = 2 Mo Kα radiation μ = 0.38 mm−1 T = 123 K 0.50 × 0.35 × 0.28 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer 6180 measured reflections 3506 independent reflections 3373 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.090 S = 1.08 3506 reflections 192 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: Yadokari-XG (Wakita, 2001 ▶; Kabuto et al., 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812048209/hg5274sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048209/hg5274Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812048209/hg5274Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15ClN2OSZ = 2
Mr = 318.81F(000) = 332
Triclinic, P1Dx = 1.351 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71070 Å
a = 7.489 (3) ÅCell parameters from 2732 reflections
b = 9.338 (4) Åθ = 3.0–27.5°
c = 13.274 (5) ŵ = 0.38 mm1
α = 65.674 (13)°T = 123 K
β = 69.975 (16)°Prism, colorless
γ = 73.639 (17)°0.50 × 0.35 × 0.28 mm
V = 783.9 (5) Å3
Rigaku/MSC Mercury CCD diffractometer3373 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.062
Graphite Monochromator monochromatorθmax = 27.5°, θmin = 3.5°
Detector resolution: 14.62 pixels mm-1h = −6→9
ω scansk = −9→12
6180 measured reflectionsl = −10→17
3506 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0371P)2 + 0.4197P] where P = (Fo2 + 2Fc2)/3
3506 reflections(Δ/σ)max < 0.001
192 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.38592 (19)0.07516 (15)0.27734 (11)0.0162 (3)
O10.44634 (15)0.17028 (13)0.18262 (9)0.0245 (2)
N10.20232 (16)0.09731 (13)0.34511 (9)0.0170 (2)
H10.17910.02750.41520.020*
C20.04854 (19)0.21635 (15)0.31664 (11)0.0151 (2)
S1−0.15915 (5)0.22091 (4)0.41821 (3)0.01758 (10)
N20.07877 (16)0.31921 (13)0.20967 (9)0.0172 (2)
H20.19720.31590.16550.021*
C30.51000 (18)−0.07725 (15)0.32976 (11)0.0157 (3)
C40.48935 (19)−0.22203 (16)0.33182 (11)0.0175 (3)
C50.6119 (2)−0.36192 (17)0.37358 (12)0.0234 (3)
H50.5988−0.45970.37280.028*
C60.7535 (2)−0.35614 (18)0.41627 (13)0.0269 (3)
H60.8371−0.45120.44600.032*
C70.7751 (2)−0.21271 (19)0.41617 (13)0.0258 (3)
H70.8721−0.21020.44620.031*
C80.6538 (2)−0.07287 (17)0.37186 (12)0.0211 (3)
H80.66950.02550.37040.025*
Cl10.30905 (5)−0.22869 (5)0.28008 (3)0.02652 (11)
C9−0.07073 (18)0.43554 (16)0.16191 (10)0.0155 (3)
C10−0.06255 (19)0.59756 (16)0.12305 (11)0.0166 (3)
C11−0.2070 (2)0.70696 (16)0.07143 (11)0.0188 (3)
C12−0.3533 (2)0.65092 (18)0.06365 (11)0.0206 (3)
H12−0.45190.72510.03040.025*
C13−0.3589 (2)0.48910 (18)0.10335 (11)0.0213 (3)
H13−0.46040.45330.09730.026*
C14−0.2158 (2)0.38012 (17)0.15185 (11)0.0191 (3)
H14−0.21660.26900.17790.023*
C150.0930 (2)0.65647 (18)0.13585 (13)0.0236 (3)
H15C0.16870.56710.18330.035*
H15A0.03420.73690.17240.035*
H15B0.17730.70380.06020.035*
C16−0.2044 (2)0.88359 (18)0.02548 (14)0.0299 (3)
H16C−0.30840.9405−0.01270.045*
H16A−0.08020.9059−0.02950.045*
H16B−0.22290.91920.08880.045*
U11U22U33U12U13U23
C10.0165 (6)0.0149 (6)0.0178 (6)−0.0008 (5)−0.0061 (5)−0.0059 (5)
O10.0191 (5)0.0235 (5)0.0202 (5)−0.0012 (4)−0.0032 (4)−0.0004 (4)
N10.0172 (5)0.0141 (5)0.0143 (5)0.0016 (4)−0.0037 (4)−0.0030 (4)
C20.0173 (6)0.0126 (5)0.0161 (6)−0.0001 (5)−0.0061 (5)−0.0059 (5)
S10.01736 (17)0.01515 (16)0.01454 (16)0.00274 (11)−0.00288 (12)−0.00425 (12)
N20.0138 (5)0.0177 (5)0.0152 (5)0.0010 (4)−0.0040 (4)−0.0031 (4)
C30.0140 (6)0.0156 (6)0.0149 (6)0.0003 (5)−0.0025 (5)−0.0055 (5)
C40.0149 (6)0.0193 (6)0.0183 (6)−0.0020 (5)−0.0018 (5)−0.0092 (5)
C50.0230 (7)0.0174 (6)0.0253 (7)0.0014 (5)−0.0021 (6)−0.0095 (5)
C60.0234 (7)0.0227 (7)0.0270 (7)0.0076 (6)−0.0087 (6)−0.0070 (6)
C70.0185 (7)0.0310 (8)0.0285 (7)0.0027 (6)−0.0112 (6)−0.0111 (6)
C80.0191 (6)0.0216 (7)0.0245 (7)−0.0018 (5)−0.0078 (5)−0.0094 (5)
Cl10.02276 (19)0.0319 (2)0.0347 (2)−0.00257 (14)−0.00959 (15)−0.02058 (16)
C90.0147 (6)0.0169 (6)0.0111 (5)0.0013 (5)−0.0037 (4)−0.0037 (5)
C100.0157 (6)0.0184 (6)0.0138 (5)−0.0011 (5)−0.0029 (5)−0.0057 (5)
C110.0184 (6)0.0181 (6)0.0153 (6)0.0013 (5)−0.0038 (5)−0.0046 (5)
C120.0162 (6)0.0260 (7)0.0146 (6)0.0025 (5)−0.0055 (5)−0.0048 (5)
C130.0167 (6)0.0297 (7)0.0170 (6)−0.0045 (5)−0.0050 (5)−0.0069 (5)
C140.0206 (6)0.0184 (6)0.0160 (6)−0.0037 (5)−0.0041 (5)−0.0040 (5)
C150.0229 (7)0.0225 (7)0.0283 (7)−0.0031 (5)−0.0097 (6)−0.0096 (6)
C160.0303 (8)0.0173 (7)0.0344 (8)0.0012 (6)−0.0100 (7)−0.0037 (6)
C1—O11.2211 (17)C8—H80.9500
C1—N11.3743 (17)C9—C141.392 (2)
C1—C31.5017 (18)C9—C101.395 (2)
N1—C21.3912 (17)C10—C111.4115 (19)
N1—H10.8800C10—C151.504 (2)
C2—N21.3299 (17)C11—C121.389 (2)
C2—S11.6770 (14)C11—C161.508 (2)
N2—C91.4385 (17)C12—C131.388 (2)
N2—H20.8800C12—H120.9500
C3—C81.389 (2)C13—C141.385 (2)
C3—C41.3917 (19)C13—H130.9500
C4—C51.390 (2)C14—H140.9500
C4—Cl11.7367 (15)C15—H15C0.9800
C5—C61.385 (2)C15—H15A0.9800
C5—H50.9500C15—H15B0.9800
C6—C71.393 (2)C16—H16C0.9800
C6—H60.9500C16—H16A0.9800
C7—C81.393 (2)C16—H16B0.9800
C7—H70.9500
O1—C1—N1123.81 (12)C14—C9—C10122.26 (13)
O1—C1—C3121.86 (12)C14—C9—N2117.73 (12)
N1—C1—C3114.33 (11)C10—C9—N2119.95 (12)
C1—N1—C2128.06 (11)C9—C10—C11117.91 (13)
C1—N1—H1116.0C9—C10—C15121.91 (13)
C2—N1—H1116.0C11—C10—C15120.18 (13)
N2—C2—N1116.79 (11)C12—C11—C10119.49 (13)
N2—C2—S1124.85 (10)C12—C11—C16119.89 (13)
N1—C2—S1118.37 (10)C10—C11—C16120.61 (13)
C2—N2—C9123.85 (11)C13—C12—C11121.55 (13)
C2—N2—H2118.1C13—C12—H12119.2
C9—N2—H2118.1C11—C12—H12119.2
C8—C3—C4119.39 (12)C14—C13—C12119.64 (13)
C8—C3—C1119.55 (12)C14—C13—H13120.2
C4—C3—C1120.99 (12)C12—C13—H13120.2
C5—C4—C3121.20 (13)C13—C14—C9119.12 (13)
C5—C4—Cl1119.12 (11)C13—C14—H14120.4
C3—C4—Cl1119.67 (11)C9—C14—H14120.4
C6—C5—C4118.81 (14)C10—C15—H15C109.5
C6—C5—H5120.6C10—C15—H15A109.5
C4—C5—H5120.6H15C—C15—H15A109.5
C5—C6—C7120.82 (14)C10—C15—H15B109.5
C5—C6—H6119.6H15C—C15—H15B109.5
C7—C6—H6119.6H15A—C15—H15B109.5
C6—C7—C8119.76 (14)C11—C16—H16C109.5
C6—C7—H7120.1C11—C16—H16A109.5
C8—C7—H7120.1H16C—C16—H16A109.5
C3—C8—C7119.99 (14)C11—C16—H16B109.5
C3—C8—H8120.0H16C—C16—H16B109.5
C7—C8—H8120.0H16A—C16—H16B109.5
O1—C1—N1—C27.9 (2)C1—C3—C8—C7−177.24 (12)
C3—C1—N1—C2−172.60 (12)C6—C7—C8—C31.1 (2)
C1—N1—C2—N22.5 (2)C2—N2—C9—C14−64.20 (17)
C1—N1—C2—S1−177.20 (11)C2—N2—C9—C10118.53 (15)
N1—C2—N2—C9171.32 (12)C14—C9—C10—C11−0.39 (19)
S1—C2—N2—C9−8.96 (19)N2—C9—C10—C11176.76 (11)
O1—C1—C3—C874.09 (18)C14—C9—C10—C15179.07 (12)
N1—C1—C3—C8−105.46 (15)N2—C9—C10—C15−3.78 (19)
O1—C1—C3—C4−102.77 (16)C9—C10—C11—C121.59 (19)
N1—C1—C3—C477.68 (16)C15—C10—C11—C12−177.88 (12)
C8—C3—C4—C5−1.0 (2)C9—C10—C11—C16−178.78 (12)
C1—C3—C4—C5175.84 (12)C15—C10—C11—C161.75 (19)
C8—C3—C4—Cl1179.64 (10)C10—C11—C12—C13−1.4 (2)
C1—C3—C4—Cl1−3.49 (17)C16—C11—C12—C13178.98 (13)
C3—C4—C5—C61.6 (2)C11—C12—C13—C14−0.1 (2)
Cl1—C4—C5—C6−179.05 (11)C12—C13—C14—C91.29 (19)
C4—C5—C6—C7−0.9 (2)C10—C9—C14—C13−1.1 (2)
C5—C6—C7—C8−0.5 (2)N2—C9—C14—C13−178.27 (11)
C4—C3—C8—C7−0.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···S1i0.882.463.3104 (15)164
N2—H2···O10.882.002.6866 (17)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯S1i 0.882.463.3104 (15)164
N2—H2⋯O10.882.002.6866 (17)134

Symmetry code: (i) .

  3 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1-Benzoyl-3-(2,4,5-trichloro-phen-yl)thio-urea.

Authors:  M Khawar Rauf; Masahiro Ebihara; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14
  3 in total

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