Literature DB >> 23476289

4-[3-(4-Methyl-piperidin-1-yl)propan-amido]-benzene-sulfonamide monohydrate.

Hasan Türkmen1, Serife Pınar Yalçın, Mustafa Durgun, Mehmet Akkurt.   

Abstract

In the title compound, C15H23N3O3S·H2O, the piperidine ring has a chair conformation. In the crystal, the sulfonamide mol-ecules are linked by N-H⋯O hydrogen bonds, forming a layer parallel to (10-1). The layers are inter-connected via N-H⋯Ow, Ow-H⋯N and Ow-H⋯O (w = water) hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 23476289      PMCID: PMC3589053          DOI: 10.1107/S1600536812048477

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For inhibitors of carbonic anhydrase enzyme, inhibitors of cysteine protease enzyme, the anti­bacterial and anti­microbial activity and physical properties of sulfonamides and their derivatives and for their pharmacological applications, see: Supuran (2008 ▶); Turkmen et al. (2005 ▶); Rami et al. (2011 ▶). For related structures, see: Yalçın et al. (2012 ▶); Akkurt et al. (2010a ▶,b ▶). For puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H23N3O3S·H2O M = 343.45 Monoclinic, a = 11.3200 (3) Å b = 7.4068 (3) Å c = 20.7937 (8) Å β = 96.787 (2)° V = 1731.23 (11) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 294 K 0.24 × 0.15 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: part of the refinement model (ΔF) (XABS2; Parkin et al., 1995 ▶) T min = 0.951, T max = 0.975 36305 measured reflections 3540 independent reflections 2259 reflections with I > 2σ(I) R int = 0.166

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.178 S = 1.02 3540 reflections 225 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812048477/is5222sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048477/is5222Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812048477/is5222Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H23N3O3S·H2OF(000) = 736
Mr = 343.45Dx = 1.318 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5649 reflections
a = 11.3200 (3) Åθ = 2.2–26.4°
b = 7.4068 (3) ŵ = 0.21 mm1
c = 20.7937 (8) ÅT = 294 K
β = 96.787 (2)°Needle, pale yellow
V = 1731.23 (11) Å30.24 × 0.15 × 0.12 mm
Z = 4
Rigaku R-AXIS RAPID-S diffractometer3540 independent reflections
Radiation source: Sealed Tube2259 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.166
Detector resolution: 10.0000 pixels mm-1θmax = 26.4°, θmin = 2.9°
ω scansh = −14→14
Absorption correction: part of the refinement model (ΔF) (XABS2; Parkin et al., 1995)k = −9→8
Tmin = 0.951, Tmax = 0.975l = −26→26
36305 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.178H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0595P)2 + 1.0901P] where P = (Fo2 + 2Fc2)/3
3540 reflections(Δ/σ)max < 0.001
225 parametersΔρmax = 0.28 e Å3
6 restraintsΔρmin = −0.19 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.76956 (7)0.20104 (14)0.14854 (4)0.0554 (3)
O10.7834 (2)0.0689 (4)0.19866 (13)0.0771 (11)
O20.8487 (2)0.1984 (4)0.09984 (13)0.0704 (10)
O30.2781 (2)0.3305 (4)−0.07524 (13)0.0760 (10)
N10.7847 (3)0.3954 (5)0.18229 (15)0.0626 (11)
N20.2710 (2)0.1957 (4)0.02247 (15)0.0547 (10)
N3−0.0921 (2)0.2718 (4)−0.12766 (13)0.0488 (9)
C10.6232 (3)0.1876 (5)0.10916 (16)0.0485 (11)
C20.5308 (3)0.1398 (5)0.14342 (18)0.0567 (14)
C30.4159 (3)0.1440 (5)0.11385 (17)0.0544 (11)
C40.3907 (3)0.1938 (5)0.04939 (17)0.0486 (11)
C50.4846 (3)0.2404 (6)0.01464 (18)0.0614 (14)
C60.5994 (3)0.2372 (6)0.04540 (17)0.0603 (14)
C70.2211 (3)0.2596 (5)−0.03523 (19)0.0550 (11)
C80.0882 (3)0.2390 (5)−0.04644 (18)0.0598 (14)
C90.0361 (3)0.3066 (5)−0.11224 (18)0.0559 (11)
C10−0.1611 (3)0.3832 (5)−0.08670 (16)0.0539 (12)
C11−0.2937 (3)0.3567 (5)−0.10375 (17)0.0538 (11)
C12−0.3345 (3)0.3988 (5)−0.17425 (17)0.0555 (11)
C13−0.2598 (3)0.2866 (5)−0.21563 (17)0.0600 (14)
C14−0.1277 (3)0.3160 (5)−0.19643 (16)0.0569 (14)
C15−0.4671 (3)0.3679 (6)−0.1923 (2)0.0781 (16)
O1W0.1110 (2)0.1006 (4)0.11435 (15)0.0665 (10)
H1NA0.756 (4)0.405 (6)0.2199 (13)0.0940*
H20.546400.104900.186500.0680*
H1NB0.767 (4)0.486 (4)0.1561 (18)0.0940*
H2N0.221 (3)0.161 (5)0.0497 (16)0.0820*
H30.353900.112900.137400.0650*
H50.469800.27310−0.028700.0740*
H60.661900.269400.022500.0720*
H8A0.053000.30530−0.013300.0720*
H8B0.068000.11260−0.042400.0720*
H9A0.049700.43560−0.114400.0670*
H9B0.077800.24960−0.145000.0670*
H10A−0.141700.50940−0.092100.0650*
H10B−0.139000.35160−0.041600.0650*
H11A−0.335800.43430−0.076500.0640*
H11B−0.313900.23260−0.094800.0640*
H12−0.318000.52650−0.181700.0670*
H13A−0.278300.15980−0.210900.0720*
H13B−0.279900.31890−0.260800.0720*
H14A−0.083100.24110−0.223300.0680*
H14B−0.108200.44110−0.204100.0680*
H15A−0.486300.24520−0.182900.1180*
H15B−0.487600.39080−0.237700.1180*
H15C−0.511000.44810−0.167700.1180*
HWA0.044 (2)0.144 (5)0.115 (2)0.1000*
HWB0.109 (4)−0.011 (3)0.121 (2)0.1000*
U11U22U33U12U13U23
S10.0363 (5)0.0734 (7)0.0547 (5)0.0018 (4)−0.0026 (4)0.0068 (5)
O10.0563 (16)0.089 (2)0.0806 (19)−0.0044 (15)−0.0147 (14)0.0295 (16)
O20.0380 (13)0.107 (2)0.0673 (17)0.0088 (14)0.0107 (12)−0.0009 (15)
O30.0451 (15)0.109 (2)0.0711 (18)−0.0076 (14)−0.0051 (13)0.0250 (17)
N10.0512 (18)0.081 (2)0.054 (2)−0.0091 (17)−0.0008 (15)−0.0017 (18)
N20.0377 (15)0.069 (2)0.0554 (18)−0.0023 (15)−0.0034 (13)0.0039 (16)
N30.0367 (14)0.0587 (18)0.0497 (16)−0.0001 (13)0.0000 (12)−0.0014 (14)
C10.0325 (16)0.059 (2)0.053 (2)0.0016 (15)0.0013 (14)0.0013 (17)
C20.045 (2)0.072 (3)0.052 (2)−0.0018 (17)0.0017 (16)0.0059 (18)
C30.0368 (18)0.071 (2)0.055 (2)−0.0057 (16)0.0043 (15)0.0054 (18)
C40.0366 (17)0.054 (2)0.054 (2)−0.0007 (15)0.0002 (15)−0.0005 (16)
C50.0390 (19)0.094 (3)0.050 (2)−0.0023 (18)0.0004 (16)0.0091 (19)
C60.0392 (19)0.092 (3)0.050 (2)−0.0019 (18)0.0061 (16)0.007 (2)
C70.0412 (19)0.058 (2)0.064 (2)−0.0029 (16)−0.0013 (17)−0.0011 (19)
C80.0396 (19)0.073 (3)0.064 (2)−0.0046 (17)−0.0061 (17)−0.0003 (19)
C90.0381 (18)0.066 (2)0.062 (2)−0.0012 (16)−0.0011 (16)0.0053 (19)
C100.050 (2)0.062 (2)0.048 (2)0.0020 (17)−0.0018 (16)−0.0053 (17)
C110.0415 (18)0.061 (2)0.059 (2)0.0008 (16)0.0059 (16)−0.0015 (18)
C120.0444 (19)0.061 (2)0.058 (2)0.0043 (17)−0.0066 (16)0.0040 (18)
C130.053 (2)0.074 (3)0.050 (2)0.0034 (19)−0.0063 (17)0.0028 (18)
C140.052 (2)0.074 (3)0.0439 (19)0.0041 (18)0.0025 (16)0.0021 (18)
C150.043 (2)0.095 (3)0.092 (3)0.003 (2)−0.010 (2)0.007 (3)
O1W0.0476 (14)0.0696 (18)0.0827 (19)−0.0055 (13)0.0089 (14)0.0065 (16)
S1—O11.425 (3)C11—C121.516 (5)
S1—O21.429 (3)C12—C151.521 (5)
S1—N11.602 (4)C12—C131.523 (5)
S1—C11.762 (3)C13—C141.517 (5)
O3—C71.229 (5)C2—H20.9300
O1W—HWA0.83 (3)C3—H30.9300
O1W—HWB0.84 (2)C5—H50.9300
N2—C41.404 (4)C6—H60.9300
N2—C71.350 (5)C8—H8A0.9700
N3—C91.472 (4)C8—H8B0.9700
N3—C141.476 (4)C9—H9A0.9700
N3—C101.474 (4)C9—H9B0.9700
N1—H1NA0.88 (3)C10—H10B0.9700
N1—H1NB0.87 (3)C10—H10A0.9700
N2—H2N0.89 (3)C11—H11A0.9700
C1—C21.380 (5)C11—H11B0.9700
C1—C61.372 (5)C12—H120.9800
C2—C31.372 (5)C13—H13B0.9700
C3—C41.387 (5)C13—H13A0.9700
C4—C51.397 (5)C14—H14B0.9700
C5—C61.379 (5)C14—H14A0.9700
C7—C81.503 (5)C15—H15C0.9600
C8—C91.510 (5)C15—H15A0.9600
C10—C111.514 (5)C15—H15B0.9600
O1—S1—O2119.01 (16)C6—C5—H5120.00
O1—S1—N1107.46 (17)C5—C6—H6119.00
O1—S1—C1108.49 (16)C1—C6—H6119.00
O2—S1—N1106.21 (18)C7—C8—H8A109.00
O2—S1—C1107.68 (16)C9—C8—H8A109.00
N1—S1—C1107.48 (18)C9—C8—H8B109.00
HWA—O1W—HWB110 (4)H8A—C8—H8B108.00
C4—N2—C7129.9 (3)C7—C8—H8B109.00
C9—N3—C14108.8 (3)N3—C9—H9B109.00
C10—N3—C14109.5 (3)C8—C9—H9A109.00
C9—N3—C10110.6 (3)N3—C9—H9A109.00
S1—N1—H1NA115 (3)H9A—C9—H9B108.00
H1NA—N1—H1NB114 (4)C8—C9—H9B109.00
S1—N1—H1NB114 (2)N3—C10—H10B109.00
C4—N2—H2N114 (2)C11—C10—H10A109.00
C7—N2—H2N116 (2)C11—C10—H10B109.00
C2—C1—C6119.6 (3)H10A—C10—H10B108.00
S1—C1—C2120.2 (3)N3—C10—H10A109.00
S1—C1—C6120.0 (3)C10—C11—H11A109.00
C1—C2—C3120.0 (3)C10—C11—H11B109.00
C2—C3—C4121.0 (3)C12—C11—H11B109.00
N2—C4—C5123.3 (3)H11A—C11—H11B108.00
N2—C4—C3117.8 (3)C12—C11—H11A109.00
C3—C4—C5118.9 (3)C11—C12—H12108.00
C4—C5—C6119.3 (3)C15—C12—H12108.00
C1—C6—C5121.3 (3)C13—C12—H12108.00
O3—C7—C8122.3 (3)C12—C13—H13A109.00
O3—C7—N2123.6 (3)C14—C13—H13A109.00
N2—C7—C8114.1 (3)C14—C13—H13B109.00
C7—C8—C9112.6 (3)H13A—C13—H13B108.00
N3—C9—C8114.1 (3)C12—C13—H13B109.00
N3—C10—C11111.8 (3)N3—C14—H14A109.00
C10—C11—C12112.3 (3)C13—C14—H14A109.00
C13—C12—C15112.1 (3)C13—C14—H14B109.00
C11—C12—C13107.9 (3)N3—C14—H14B109.00
C11—C12—C15112.7 (3)H14A—C14—H14B108.00
C12—C13—C14111.7 (3)C12—C15—H15B109.00
N3—C14—C13111.8 (3)C12—C15—H15C109.00
C1—C2—H2120.00C12—C15—H15A109.00
C3—C2—H2120.00H15A—C15—H15C109.00
C4—C3—H3119.00H15B—C15—H15C110.00
C2—C3—H3120.00H15A—C15—H15B109.00
C4—C5—H5120.00
O1—S1—C1—C232.8 (4)S1—C1—C6—C5−175.3 (3)
O2—S1—C1—C2162.8 (3)S1—C1—C2—C3174.6 (3)
N1—S1—C1—C2−83.2 (3)C1—C2—C3—C40.8 (6)
O1—S1—C1—C6−151.9 (3)C2—C3—C4—N2−179.7 (3)
O2—S1—C1—C6−21.9 (4)C2—C3—C4—C5−0.1 (6)
N1—S1—C1—C692.2 (3)N2—C4—C5—C6179.0 (4)
C7—N2—C4—C3170.6 (4)C3—C4—C5—C6−0.6 (6)
C7—N2—C4—C5−9.1 (6)C4—C5—C6—C10.6 (6)
C4—N2—C7—O30.0 (6)N2—C7—C8—C9−178.2 (3)
C4—N2—C7—C8−179.3 (3)O3—C7—C8—C92.5 (5)
C9—N3—C10—C11177.3 (3)C7—C8—C9—N3174.1 (3)
C10—N3—C9—C869.1 (4)N3—C10—C11—C12−57.4 (4)
C14—N3—C9—C8−170.7 (3)C10—C11—C12—C15178.5 (3)
C10—N3—C14—C13−58.0 (4)C10—C11—C12—C1354.1 (4)
C14—N3—C10—C1157.5 (4)C11—C12—C13—C14−54.3 (4)
C9—N3—C14—C13−179.0 (3)C15—C12—C13—C14−179.0 (3)
C6—C1—C2—C3−0.7 (6)C12—C13—C14—N358.0 (4)
C2—C1—C6—C50.0 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1NA···O1i0.88 (3)2.17 (4)2.971 (4)150 (4)
N1—H1NB···O3ii0.87 (3)2.18 (3)3.035 (4)168 (3)
N2—H2N···O1W0.89 (3)1.99 (3)2.871 (4)176 (3)
O1W—HWA···O2iii0.83 (3)2.23 (2)3.037 (3)165 (4)
O1W—HWB···N3iv0.84 (2)1.95 (2)2.783 (4)174 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1NA⋯O1i 0.88 (3)2.17 (4)2.971 (4)150 (4)
N1—H1NB⋯O3ii 0.87 (3)2.18 (3)3.035 (4)168 (3)
N2—H2N⋯O1W 0.89 (3)1.99 (3)2.871 (4)176 (3)
O1W—HWA⋯O2iii 0.83 (3)2.23 (2)3.037 (3)165 (4)
O1W—HWB⋯N3iv 0.84 (2)1.95 (2)2.783 (4)174 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

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Authors:  Claudiu T Supuran
Journal:  Nat Rev Drug Discov       Date:  2008-02       Impact factor: 84.694

2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of rhodamine B-benzenesulfonamide conjugates and their inhibitory activity against human α- and bacterial/fungal β-carbonic anhydrases.

Authors:  Marouan Rami; Alessio Innocenti; Jean-Louis Montero; Andrea Scozzafava; Jean-Yves Winum; Claudiu T Supuran
Journal:  Bioorg Med Chem Lett       Date:  2011-07-21       Impact factor: 2.823

4.  2-Chloro-N-(4-sulfamoylphen-yl)acetamide.

Authors:  Mehmet Akkurt; Serife Pınar Yalçın; Hasan Türkmen; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

5.  Carbonic anhydrase inhibitors. Novel sulfanilamide/acetazolamide derivatives obtained by the tail approach and their interaction with the cytosolic isozymes I and II, and the tumor-associated isozyme IX.

Authors:  Hasan Turkmen; Mustafa Durgun; Serpil Yilmaztekin; Mahmut Emul; Alessio Innocenti; Daniela Vullo; Andrea Scozzafava; Claudiu T Supuran
Journal:  Bioorg Med Chem Lett       Date:  2005-01-17       Impact factor: 2.823

6.  4-(3-Chloro-2,2-dimethyl-propanamido)-benzene-sulfonamide.

Authors:  Serife Pınar Yalçın; Mehmet Akkurt; Mustafa Durgun; Baki Türkkan; Hasan Türkmen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-24

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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