Literature DB >> 23476285

2-[(4-Bromo-benzyl-idene)amino]-ethanol.

Vashen Moodley1, Werner E Van Zyl.   

Abstract

In the crystal structure of the title compound, C9H10BrNO, molecules are linked via O-H⋯N n class="Chemical">hydrogen bonds of a moderate strength between the hy-droxy groups and the imine N atoms. These hydrogen bonds, as well as the planes of the bromo-phenyl rings, are situated in alternating planes parallel to (013) and (0-13). In addition, there are weak C-H⋯π inter-actions in the structure.

Entities:  

Year:  2012        PMID: 23476285      PMCID: PMC3589049          DOI: 10.1107/S1600536812048155

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For previous work on the preparation of imine-based ligands, by our group, see: Williams et al. (2007 ▶). For related structures and their preparation, see: Elslager et al. (1956 ▶); Vennila et al. (2010 ▶); Jafarpour et al. (2011 ▶). For n class="Chemical">imines, see: Morrison et al. (1987 ▶); Tidwell (2007 ▶) and for their biological activity, see: Solomon & Lowery (1993 ▶); Fioravanti et al. (1995 ▶); Mallikarjun & Sangamesh (1997 ▶); Samadhiya & Halve (2001 ▶); Gerdemann et al. (2002 ▶); Veverková & Toma (2008 ▶); Khan et al. (2009 ▶). For classification of hydrogen bonds, see: Gilli & Gilli (2009 ▶).

Experimental

Crystal data

C9H10BrNO M = 228.09 Monoclinic, a = 22.349 (4) Å b = 6.0328 (10) Å c = 7.3673 (12) Å β = 107.980 (3)° V = 944.8 (3) Å3 Z = 4 Mo Kα radiation μ = 4.30 mm−1 T = 173 K 0.36 × 0.15 × 0.02 mm

Data collection

Bruker Kappa DUO APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.305, T max = 0.919 3713 measured reflections 1651 independent reflections 1550 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.059 S = 1.00 1651 reflections 113 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.71 e Å−3 Δρmin = −0.45 e Å−3 Absolute structure: Flack (1983 ▶), 788 Friedel pairs Flack parameter: 0.022 (12) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (n class="Chemical">Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812048155/fb2276sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048155/fb2276Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812048155/fb2276Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10BrNOF(000) = 456
Mr = 228.09Dx = 1.604 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 3713 reflections
a = 22.349 (4) Åθ = 3.5–25.3°
b = 6.0328 (10) ŵ = 4.30 mm1
c = 7.3673 (12) ÅT = 173 K
β = 107.980 (3)°Plate, colourless
V = 944.8 (3) Å30.36 × 0.15 × 0.02 mm
Z = 4
Bruker Kappa DUO APEXII diffractometer1651 independent reflections
Radiation source: fine-focus sealed tube1550 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
0.5° φ scans and ω scansθmax = 25.3°, θmin = 3.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −24→26
Tmin = 0.305, Tmax = 0.919k = −7→7
3713 measured reflectionsl = −8→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.059w = 1/[σ2(Fo2) + (0.0174P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1651 reflectionsΔρmax = 0.71 e Å3
113 parametersΔρmin = −0.45 e Å3
1 restraintAbsolute structure: Flack (1983), 788 Friedel pairs
37 constraintsFlack parameter: 0.022 (12)
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.682260 (18)0.64650 (5)0.71855 (2)0.04348 (12)
O10.34787 (17)0.6979 (5)1.1065 (4)0.0461 (7)
H10.359 (2)0.554 (4)1.165 (7)0.069*
N10.37448 (13)0.7338 (5)0.7440 (4)0.0352 (7)
C10.60169 (15)0.7091 (5)0.7424 (4)0.0304 (7)
C20.55354 (15)0.5562 (6)0.6774 (4)0.0302 (7)
H20.56100.41940.62440.036*
C30.49499 (17)0.6038 (5)0.6903 (5)0.0315 (7)
H30.46200.49890.64630.038*
C40.48338 (18)0.8054 (6)0.7676 (5)0.0287 (8)
C50.53236 (16)0.9557 (6)0.8318 (4)0.0315 (7)
H50.52491.09290.88440.038*
C60.59188 (17)0.9099 (6)0.8208 (5)0.0347 (8)
H60.62521.01340.86580.042*
C70.42189 (16)0.8625 (5)0.7886 (5)0.0310 (7)
H70.41731.00430.83860.037*
C80.31685 (17)0.8097 (6)0.7782 (6)0.0387 (8)
H8A0.28150.80340.65780.046*
H8B0.32200.96560.82240.046*
C90.30217 (18)0.6660 (6)0.9269 (6)0.0404 (8)
H9A0.26000.70430.93540.048*
H9B0.30160.50830.88930.048*
U11U22U33U12U13U23
Br10.03404 (18)0.0539 (2)0.04599 (18)0.0060 (3)0.01748 (12)0.0006 (3)
O10.067 (2)0.0296 (13)0.0442 (18)−0.0032 (15)0.0204 (15)−0.0002 (12)
N10.0358 (17)0.0331 (16)0.0399 (16)0.0043 (13)0.0164 (12)0.0035 (13)
C10.0268 (18)0.0386 (18)0.0265 (16)0.0057 (14)0.0093 (13)0.0052 (14)
C20.0363 (19)0.0256 (16)0.0297 (16)0.0036 (14)0.0114 (14)0.0000 (14)
C30.040 (2)0.0247 (16)0.0302 (16)−0.0039 (14)0.0115 (14)−0.0020 (13)
C40.038 (2)0.0261 (16)0.0236 (17)0.0054 (16)0.0112 (15)0.0020 (13)
C50.039 (2)0.0265 (18)0.0300 (17)0.0017 (15)0.0117 (14)−0.0028 (15)
C60.037 (2)0.0335 (17)0.0329 (17)−0.0057 (15)0.0094 (14)−0.0030 (15)
C70.0360 (19)0.0284 (17)0.0301 (16)0.0067 (14)0.0125 (14)0.0021 (13)
C80.0314 (19)0.0397 (18)0.047 (2)0.0041 (15)0.0153 (15)0.0024 (16)
C90.036 (2)0.0363 (18)0.054 (2)0.0014 (15)0.0212 (17)−0.0019 (17)
Br1—C11.900 (3)C4—C51.387 (5)
O1—C91.413 (5)C4—C71.471 (5)
O1—H10.968 (5)C5—C61.385 (5)
N1—C71.272 (4)C5—H50.9500
N1—C81.461 (4)C6—H60.9500
C1—C21.386 (5)C7—H70.9500
C1—C61.388 (5)C8—C91.510 (5)
C2—C31.371 (5)C8—H8A0.9900
C2—H20.9500C8—H8B0.9900
C3—C41.401 (5)C9—H9A0.9900
C3—H30.9500C9—H9B0.9900
C9—O1—H1108 (3)C5—C6—H6120.8
C7—N1—C8118.2 (3)C1—C6—H6120.8
C2—C1—C6121.3 (3)N1—C7—C4124.1 (3)
C2—C1—Br1119.5 (3)N1—C7—H7117.9
C6—C1—Br1119.2 (3)C4—C7—H7117.9
C3—C2—C1119.5 (3)N1—C8—C9110.2 (3)
C3—C2—H2120.2N1—C8—H8A109.6
C1—C2—H2120.2C9—C8—H8A109.6
C2—C3—C4120.7 (3)N1—C8—H8B109.6
C2—C3—H3119.7C9—C8—H8B109.6
C4—C3—H3119.7H8A—C8—H8B108.1
C5—C4—C3118.7 (3)O1—C9—C8110.2 (3)
C5—C4—C7118.4 (3)O1—C9—H9A109.6
C3—C4—C7122.8 (3)C8—C9—H9A109.6
C6—C5—C4121.4 (3)O1—C9—H9B109.6
C6—C5—H5119.3C8—C9—H9B109.6
C4—C5—H5119.3H9A—C9—H9B108.1
C5—C6—C1118.5 (3)
C6—C1—C2—C30.1 (5)C2—C1—C6—C5−0.5 (5)
Br1—C1—C2—C3−178.4 (2)Br1—C1—C6—C5178.1 (2)
C1—C2—C3—C40.2 (5)C8—N1—C7—C4178.1 (3)
C2—C3—C4—C5−0.3 (5)C5—C4—C7—N1−176.3 (3)
C2—C3—C4—C7−178.6 (3)C3—C4—C7—N11.9 (5)
C3—C4—C5—C60.0 (5)C7—N1—C8—C9−115.0 (4)
C7—C4—C5—C6178.3 (3)N1—C8—C9—O167.6 (4)
C4—C5—C6—C10.4 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.97 (3)1.83 (3)2.791 (4)172 (4)
C2—H2···Cg1ii0.952.833.58 (3)137
C5—H5···Cg1iii0.952.793.512 (3)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N1i 0.97 (3)1.83 (3)2.791 (4)172 (4)
C2—H2⋯Cg1ii 0.952.833.58 (3)137
C5—H5⋯Cg1iii 0.952.793.512 (3)134

Symmetry codes: (i) ; (ii) ; (iii) .

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