| Literature DB >> 23476237 |
Kaliyaperumal Thanigaimani1, Abbas Farhadikoutenaei, Suhana Arshad, Ibrahim Abdul Razak, Kasthuri Balasubramani.
Abstract
The base mol-ecule of the title co-crystal, C7H10N2O2S·C7H6O3, is essentially planar, with a maximum deviation of 0.0806 (14) Å for all non-H atoms. The acid mol-ecule is also nearly planar, with a dihedral angle of 8.12 (14)° between the benzene ring and the carb-oxy group. In the crystal, the acid mol-ecules form an inversion dimer through a pair of O-H⋯O hydrogen bonds with an R2(2)(8) ring motif. The pyrimidine mol-ecules are linked on both sides of the dimer into a heterotetra-mer via O-H⋯N and C-H⋯O hydrogen bonds with R2(2)(8) ring motifs. The heterotetra-mers are further linked by weak C-H⋯O hydrogen bonds, forming a tape structure along [1-10].Entities:
Year: 2012 PMID: 23476237 PMCID: PMC3589001 DOI: 10.1107/S1600536812046338
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H10N2O2S·C7H6O3 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 9952 reflections | |
| θ = 2.5–32.6° | |
| µ = 0.24 mm−1 | |
| α = 77.419 (2)° | |
| β = 83.381 (2)° | Block, colourless |
| γ = 89.209 (2)° | 0.44 × 0.37 × 0.23 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 3393 independent reflections |
| Radiation source: fine-focus sealed tube | 3105 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 13682 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3393 reflections | (Δ/σ)max = 0.001 |
| 210 parameters | Δρmax = 0.46 e Å−3 |
| 1 restraint | Δρmin = −0.27 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.22119 (4) | 0.45956 (3) | 0.93029 (3) | 0.02129 (10) | |
| O1 | 0.78663 (12) | 0.67424 (9) | 0.67045 (9) | 0.0237 (2) | |
| O2 | 0.81296 (13) | 0.20863 (9) | 0.83750 (9) | 0.0261 (2) | |
| O3 | 0.31596 (13) | 0.39971 (9) | 0.58570 (9) | 0.0251 (2) | |
| O4 | 0.61173 (13) | 0.34673 (10) | 0.50895 (9) | 0.0272 (2) | |
| O5 | 0.28845 (14) | −0.22653 (9) | 0.78692 (9) | 0.0260 (2) | |
| N1 | 0.53552 (14) | 0.56189 (10) | 0.79118 (10) | 0.0195 (2) | |
| N2 | 0.54001 (14) | 0.32727 (10) | 0.87876 (10) | 0.0199 (2) | |
| C1 | 0.71747 (17) | 0.55457 (12) | 0.73576 (11) | 0.0197 (2) | |
| C2 | 0.81861 (17) | 0.43673 (13) | 0.74714 (12) | 0.0214 (2) | |
| H2A | 0.9460 | 0.4324 | 0.7067 | 0.026* | |
| C3 | 0.71973 (17) | 0.32502 (13) | 0.82225 (11) | 0.0207 (2) | |
| C4 | 0.45790 (16) | 0.44686 (12) | 0.85972 (11) | 0.0185 (2) | |
| C5 | 0.7153 (2) | 0.09621 (13) | 0.92394 (13) | 0.0300 (3) | |
| H5A | 0.8014 | 0.0196 | 0.9344 | 0.045* | |
| H5B | 0.5998 | 0.0741 | 0.8888 | 0.045* | |
| H5C | 0.6784 | 0.1185 | 1.0074 | 0.045* | |
| C6 | 0.16623 (18) | 0.28891 (13) | 1.00996 (13) | 0.0261 (3) | |
| H6A | 0.0352 | 0.2828 | 1.0546 | 0.039* | |
| H6B | 0.2579 | 0.2581 | 1.0721 | 0.039* | |
| H6C | 0.1756 | 0.2331 | 0.9464 | 0.039* | |
| C7 | 0.98129 (18) | 0.67934 (14) | 0.60767 (13) | 0.0271 (3) | |
| H7A | 1.0168 | 0.7718 | 0.5665 | 0.041* | |
| H7B | 0.9897 | 0.6253 | 0.5427 | 0.041* | |
| H7C | 1.0694 | 0.6444 | 0.6712 | 0.041* | |
| C8 | 0.55397 (17) | 0.07913 (13) | 0.62423 (12) | 0.0219 (2) | |
| H8A | 0.6798 | 0.1082 | 0.5862 | 0.026* | |
| C9 | 0.51922 (17) | −0.05487 (13) | 0.67699 (12) | 0.0220 (2) | |
| H9A | 0.6210 | −0.1170 | 0.6762 | 0.026* | |
| C10 | 0.33342 (18) | −0.09825 (12) | 0.73148 (11) | 0.0213 (2) | |
| C11 | 0.18445 (18) | −0.00551 (13) | 0.73189 (13) | 0.0266 (3) | |
| H11A | 0.0576 | −0.0348 | 0.7674 | 0.032* | |
| C12 | 0.22154 (18) | 0.12821 (13) | 0.68095 (12) | 0.0248 (3) | |
| H12A | 0.1205 | 0.1906 | 0.6833 | 0.030* | |
| C13 | 0.40666 (17) | 0.17230 (12) | 0.62604 (11) | 0.0199 (2) | |
| C14 | 0.44409 (17) | 0.31494 (12) | 0.57134 (11) | 0.0201 (2) | |
| H1O4 | 0.625 (4) | 0.4317 (11) | 0.482 (3) | 0.095 (10)* | |
| H1O5 | 0.377 (3) | −0.275 (3) | 0.781 (2) | 0.063 (7)* |
| S1 | 0.01540 (15) | 0.01880 (17) | 0.02680 (17) | 0.00153 (11) | 0.00292 (11) | −0.00160 (12) |
| O1 | 0.0193 (4) | 0.0201 (4) | 0.0286 (4) | −0.0013 (3) | 0.0057 (3) | −0.0024 (4) |
| O2 | 0.0238 (4) | 0.0198 (5) | 0.0323 (5) | 0.0059 (4) | 0.0029 (4) | −0.0040 (4) |
| O3 | 0.0258 (4) | 0.0179 (4) | 0.0298 (5) | 0.0025 (3) | 0.0014 (4) | −0.0040 (4) |
| O4 | 0.0218 (4) | 0.0204 (5) | 0.0345 (5) | −0.0021 (4) | 0.0034 (4) | 0.0010 (4) |
| O5 | 0.0235 (5) | 0.0152 (4) | 0.0350 (5) | 0.0010 (4) | 0.0047 (4) | −0.0008 (4) |
| N1 | 0.0164 (4) | 0.0196 (5) | 0.0216 (5) | 0.0012 (4) | 0.0002 (4) | −0.0037 (4) |
| N2 | 0.0174 (5) | 0.0196 (5) | 0.0223 (5) | 0.0013 (4) | −0.0004 (4) | −0.0049 (4) |
| C1 | 0.0178 (5) | 0.0205 (6) | 0.0203 (5) | −0.0006 (4) | −0.0001 (4) | −0.0045 (4) |
| C2 | 0.0169 (5) | 0.0228 (6) | 0.0240 (6) | 0.0019 (4) | 0.0014 (4) | −0.0061 (5) |
| C3 | 0.0188 (5) | 0.0209 (6) | 0.0228 (5) | 0.0039 (4) | −0.0019 (4) | −0.0065 (5) |
| C4 | 0.0166 (5) | 0.0198 (6) | 0.0193 (5) | 0.0004 (4) | −0.0015 (4) | −0.0050 (4) |
| C5 | 0.0351 (7) | 0.0196 (6) | 0.0313 (7) | 0.0053 (5) | 0.0039 (5) | −0.0011 (5) |
| C6 | 0.0207 (6) | 0.0216 (6) | 0.0325 (6) | −0.0009 (5) | 0.0041 (5) | −0.0019 (5) |
| C7 | 0.0185 (6) | 0.0287 (7) | 0.0308 (7) | −0.0037 (5) | 0.0054 (5) | −0.0032 (5) |
| C8 | 0.0193 (5) | 0.0202 (6) | 0.0247 (6) | 0.0005 (5) | 0.0009 (4) | −0.0037 (5) |
| C9 | 0.0199 (6) | 0.0195 (6) | 0.0254 (6) | 0.0031 (4) | −0.0002 (4) | −0.0037 (5) |
| C10 | 0.0237 (6) | 0.0173 (6) | 0.0212 (5) | 0.0002 (5) | 0.0009 (4) | −0.0023 (4) |
| C11 | 0.0211 (6) | 0.0210 (6) | 0.0331 (7) | 0.0007 (5) | 0.0070 (5) | −0.0012 (5) |
| C12 | 0.0228 (6) | 0.0198 (6) | 0.0288 (6) | 0.0037 (5) | 0.0043 (5) | −0.0027 (5) |
| C13 | 0.0221 (6) | 0.0169 (6) | 0.0197 (5) | 0.0006 (4) | 0.0007 (4) | −0.0034 (4) |
| C14 | 0.0217 (6) | 0.0185 (6) | 0.0195 (5) | 0.0004 (4) | −0.0012 (4) | −0.0037 (4) |
| S1—C4 | 1.7552 (12) | C5—H5B | 0.9800 |
| S1—C6 | 1.8034 (14) | C5—H5C | 0.9800 |
| O1—C1 | 1.3434 (15) | C6—H6A | 0.9800 |
| O1—C7 | 1.4444 (14) | C6—H6B | 0.9800 |
| O2—C3 | 1.3429 (15) | C6—H6C | 0.9800 |
| O2—C5 | 1.4406 (16) | C7—H7A | 0.9800 |
| O3—C14 | 1.2619 (15) | C7—H7B | 0.9800 |
| O4—C14 | 1.2904 (15) | C7—H7C | 0.9800 |
| O4—H1O4 | 0.862 (10) | C8—C9 | 1.3851 (17) |
| O5—C10 | 1.3497 (15) | C8—C13 | 1.3987 (17) |
| O5—H1O5 | 0.79 (3) | C8—H8A | 0.9500 |
| N1—C4 | 1.3358 (16) | C9—C10 | 1.3990 (17) |
| N1—C1 | 1.3497 (15) | C9—H9A | 0.9500 |
| N2—C3 | 1.3336 (15) | C10—C11 | 1.4032 (17) |
| N2—C4 | 1.3354 (16) | C11—C12 | 1.3816 (18) |
| C1—C2 | 1.3845 (17) | C11—H11A | 0.9500 |
| C2—C3 | 1.3930 (17) | C12—C13 | 1.3977 (17) |
| C2—H2A | 0.9500 | C12—H12A | 0.9500 |
| C5—H5A | 0.9800 | C13—C14 | 1.4722 (17) |
| C4—S1—C6 | 101.55 (6) | H6A—C6—H6C | 109.5 |
| C1—O1—C7 | 117.10 (10) | H6B—C6—H6C | 109.5 |
| C3—O2—C5 | 116.61 (10) | O1—C7—H7A | 109.5 |
| C14—O4—H1O4 | 112 (2) | O1—C7—H7B | 109.5 |
| C10—O5—H1O5 | 112.7 (18) | H7A—C7—H7B | 109.5 |
| C4—N1—C1 | 115.43 (10) | O1—C7—H7C | 109.5 |
| C3—N2—C4 | 115.10 (11) | H7A—C7—H7C | 109.5 |
| O1—C1—N1 | 111.95 (10) | H7B—C7—H7C | 109.5 |
| O1—C1—C2 | 124.93 (11) | C9—C8—C13 | 121.05 (11) |
| N1—C1—C2 | 123.11 (11) | C9—C8—H8A | 119.5 |
| C1—C2—C3 | 115.03 (11) | C13—C8—H8A | 119.5 |
| C1—C2—H2A | 122.5 | C8—C9—C10 | 119.61 (11) |
| C3—C2—H2A | 122.5 | C8—C9—H9A | 120.2 |
| N2—C3—O2 | 118.77 (11) | C10—C9—H9A | 120.2 |
| N2—C3—C2 | 124.02 (11) | O5—C10—C9 | 123.27 (11) |
| O2—C3—C2 | 117.20 (11) | O5—C10—C11 | 117.12 (11) |
| N2—C4—N1 | 127.30 (11) | C9—C10—C11 | 119.60 (11) |
| N2—C4—S1 | 118.35 (9) | C12—C11—C10 | 120.27 (12) |
| N1—C4—S1 | 114.35 (9) | C12—C11—H11A | 119.9 |
| O2—C5—H5A | 109.5 | C10—C11—H11A | 119.9 |
| O2—C5—H5B | 109.5 | C11—C12—C13 | 120.47 (12) |
| H5A—C5—H5B | 109.5 | C11—C12—H12A | 119.8 |
| O2—C5—H5C | 109.5 | C13—C12—H12A | 119.8 |
| H5A—C5—H5C | 109.5 | C12—C13—C8 | 118.99 (11) |
| H5B—C5—H5C | 109.5 | C12—C13—C14 | 119.95 (11) |
| S1—C6—H6A | 109.5 | C8—C13—C14 | 121.05 (11) |
| S1—C6—H6B | 109.5 | O3—C14—O4 | 122.92 (12) |
| H6A—C6—H6B | 109.5 | O3—C14—C13 | 120.49 (11) |
| S1—C6—H6C | 109.5 | O4—C14—C13 | 116.60 (11) |
| C7—O1—C1—N1 | 179.48 (10) | C6—S1—C4—N2 | −0.74 (11) |
| C7—O1—C1—C2 | 0.01 (18) | C6—S1—C4—N1 | 179.09 (9) |
| C4—N1—C1—O1 | −178.96 (10) | C13—C8—C9—C10 | 0.86 (19) |
| C4—N1—C1—C2 | 0.52 (17) | C8—C9—C10—O5 | −178.72 (11) |
| O1—C1—C2—C3 | 178.46 (11) | C8—C9—C10—C11 | 0.08 (19) |
| N1—C1—C2—C3 | −0.95 (18) | O5—C10—C11—C12 | 177.68 (12) |
| C4—N2—C3—O2 | 179.53 (10) | C9—C10—C11—C12 | −1.2 (2) |
| C4—N2—C3—C2 | −0.63 (17) | C10—C11—C12—C13 | 1.4 (2) |
| C5—O2—C3—N2 | −5.20 (16) | C11—C12—C13—C8 | −0.42 (19) |
| C5—O2—C3—C2 | 174.95 (11) | C11—C12—C13—C14 | 179.62 (12) |
| C1—C2—C3—N2 | 1.02 (18) | C9—C8—C13—C12 | −0.70 (19) |
| C1—C2—C3—O2 | −179.14 (11) | C9—C8—C13—C14 | 179.26 (11) |
| C3—N2—C4—N1 | 0.13 (18) | C12—C13—C14—O3 | 7.67 (17) |
| C3—N2—C4—S1 | 179.94 (8) | C8—C13—C14—O3 | −172.29 (11) |
| C1—N1—C4—N2 | −0.08 (18) | C12—C13—C14—O4 | −172.05 (11) |
| C1—N1—C4—S1 | −179.89 (8) | C8—C13—C14—O4 | 7.99 (17) |
| H··· | ||||
| O4—H1 | 0.86 (2) | 1.76 (2) | 2.6189 (14) | 172 (3) |
| O5—H1 | 0.80 (3) | 1.99 (3) | 2.7562 (14) | 162 (3) |
| C9—H9 | 0.95 | 2.44 | 3.3437 (16) | 160 |
| C12—H12 | 0.95 | 2.59 | 3.3340 (16) | 135 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O4—H1 | 0.86 (2) | 1.76 (2) | 2.6189 (14) | 172 (3) |
| O5—H1 | 0.80 (3) | 1.99 (3) | 2.7562 (14) | 162 (3) |
| C9—H9 | 0.95 | 2.44 | 3.3437 (16) | 160 |
| C12—H12 | 0.95 | 2.59 | 3.3340 (16) | 135 |
Symmetry codes: (i) ; (ii) ; (iii) .