Literature DB >> 23476228

(E)-3-Chloro-N'-hy-droxy-benzene-1-carboximidamide.

S Sreenivasa1, K E Manojkumar, P A Suchetan, N R Mohan, B S Palakshamurthy.   

Abstract

The title compound, C7H7ClN2O, crystallizes with two independent mol-ecules in the asymmetric unit. The compound adopts an E configuration across the C=N double bond, as the -OH group and the benzene ring are on opposite sides of the double bond while the H atom of the hy-droxy group is directed away from the -NH2 group. In the crystal, mol-ecules are linked to one another through O-H⋯N and N-H⋯O hydrogen bonds, forming chains along [010].

Entities:  

Year:  2012        PMID: 23476228      PMCID: PMC3588992          DOI: 10.1107/S1600536812046612

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related syntheses and the biological activity of oxadiazo­les, see: Kundu et al. (2012 ▶); Sakamoto et al. (2007 ▶); Tyrkov & Sukhenko (2004 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C7H7ClN2O M = 170.60 Triclinic, a = 5.0018 (17) Å b = 10.984 (4) Å c = 14.407 (6) Å α = 74.000 (12)° β = 89.952 (12)° γ = 89.877 (11)° V = 760.9 (5) Å3 Z = 4 Mo Kα radiation μ = 0.44 mm−1 T = 298 K 0.24 × 0.22 × 0.20 mm

Data collection

Bruker SMART X2S diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.902, T max = 0.917 14972 measured reflections 2655 independent reflections 2192 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.109 S = 1.05 2655 reflections 218 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046612/jj2159sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046612/jj2159Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046612/jj2159Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H7ClN2OF(000) = 352
Mr = 170.60Prism
Triclinic, P1Dx = 1.489 Mg m3
Hall symbol: -P 1Melting point: 386 K
a = 5.0018 (17) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.984 (4) ÅCell parameters from 218 reflections
c = 14.407 (6) Åθ = 1.9–25°
α = 74.000 (12)°µ = 0.44 mm1
β = 89.952 (12)°T = 298 K
γ = 89.877 (11)°Prism, colourless
V = 760.9 (5) Å30.24 × 0.22 × 0.20 mm
Z = 4
Bruker SMART X2S diffractometer2655 independent reflections
Radiation source: fine-focus sealed tube2192 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.060
Detector resolution: 1.20 pixels mm-1θmax = 25.0°, θmin = 1.9°
phi and ω scansh = −5→5
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)k = −13→13
Tmin = 0.902, Tmax = 0.917l = −17→17
14972 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0546P)2 + 0.1852P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
2655 reflectionsΔρmax = 0.19 e Å3
218 parametersΔρmin = −0.24 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.024 (4)
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H1B0.079 (5)0.805 (3)0.050 (2)0.066 (8)*
H3B0.430 (5)0.301 (3)0.047 (2)0.065 (8)*
H3A0.247 (5)0.322 (2)0.1254 (17)0.043 (6)*
H1A0.256 (5)0.823 (2)0.124 (2)0.060 (7)*
Cl10.42873 (11)0.85954 (5)0.44393 (4)0.0554 (2)
O1−0.3214 (3)0.87635 (13)0.00143 (11)0.0422 (4)
H1−0.42850.9158−0.03880.063*
N10.0928 (3)0.81988 (15)0.10588 (14)0.0382 (4)
N2−0.3071 (3)0.93253 (14)0.08000 (12)0.0356 (4)
C1−0.0344 (3)0.95168 (15)0.20990 (13)0.0300 (4)
C20.1471 (3)0.89050 (16)0.28068 (14)0.0345 (4)
H20.23260.81700.27630.041*
C30.1997 (4)0.93902 (17)0.35722 (14)0.0363 (4)
C40.0746 (4)1.04675 (18)0.36709 (15)0.0417 (5)
H40.11161.07830.41930.050*
C5−0.1068 (4)1.10622 (19)0.29740 (16)0.0456 (5)
H5−0.19391.17870.30300.055*
C6−0.1621 (4)1.06053 (17)0.21941 (15)0.0398 (5)
H6−0.28491.10240.17310.048*
C7−0.0862 (3)0.90061 (15)0.12633 (13)0.0285 (4)
Cl20.07127 (12)0.35954 (5)0.44389 (4)0.0556 (2)
O20.8210 (3)0.37629 (13)0.00125 (11)0.0420 (3)
H2A0.92560.4165−0.03960.063*
N30.4070 (4)0.31958 (15)0.10577 (14)0.0381 (4)
N40.8071 (3)0.43247 (15)0.08013 (12)0.0357 (4)
C80.5338 (3)0.45141 (15)0.20995 (13)0.0298 (4)
C90.3535 (4)0.39047 (16)0.28028 (14)0.0350 (4)
H90.26840.31720.27570.042*
C100.3003 (4)0.43874 (17)0.35716 (14)0.0363 (4)
C110.4257 (4)0.54666 (18)0.36691 (15)0.0422 (5)
H110.38850.57820.41920.051*
C120.6065 (4)0.60617 (19)0.29736 (16)0.0457 (5)
H120.69310.67860.30300.055*
C130.6620 (4)0.56053 (17)0.21931 (15)0.0396 (5)
H130.78450.60230.17290.048*
C140.5860 (3)0.40097 (15)0.12632 (13)0.0286 (4)
U11U22U33U12U13U23
Cl10.0630 (4)0.0547 (3)0.0467 (4)0.0016 (2)−0.0246 (3)−0.0106 (2)
O10.0441 (8)0.0484 (8)0.0418 (8)0.0024 (6)−0.0111 (6)−0.0251 (7)
N10.0349 (10)0.0440 (9)0.0412 (10)0.0039 (7)−0.0025 (7)−0.0210 (8)
N20.0357 (9)0.0405 (8)0.0357 (9)0.0016 (6)−0.0075 (7)−0.0191 (7)
C10.0289 (9)0.0297 (8)0.0321 (10)−0.0037 (6)−0.0001 (7)−0.0097 (7)
C20.0353 (10)0.0311 (9)0.0383 (11)0.0006 (7)−0.0048 (8)−0.0114 (8)
C30.0358 (10)0.0381 (9)0.0335 (10)−0.0059 (7)−0.0049 (8)−0.0075 (8)
C40.0522 (12)0.0401 (10)0.0375 (11)−0.0075 (8)−0.0013 (9)−0.0185 (9)
C50.0544 (13)0.0391 (10)0.0500 (13)0.0068 (8)−0.0044 (10)−0.0233 (9)
C60.0418 (11)0.0377 (10)0.0417 (11)0.0078 (8)−0.0107 (8)−0.0138 (8)
C70.0284 (9)0.0263 (8)0.0308 (9)−0.0042 (6)0.0003 (7)−0.0081 (7)
Cl20.0633 (4)0.0552 (3)0.0465 (4)−0.0023 (2)0.0241 (3)−0.0109 (2)
O20.0445 (8)0.0488 (8)0.0404 (8)−0.0033 (6)0.0107 (6)−0.0252 (7)
N30.0331 (10)0.0442 (9)0.0423 (10)−0.0049 (7)0.0039 (7)−0.0211 (8)
N40.0347 (9)0.0411 (8)0.0367 (9)−0.0018 (6)0.0056 (7)−0.0197 (7)
C80.0290 (9)0.0296 (8)0.0320 (10)0.0029 (6)0.0001 (7)−0.0103 (7)
C90.0351 (10)0.0313 (9)0.0401 (11)−0.0006 (7)0.0044 (8)−0.0122 (8)
C100.0374 (11)0.0366 (9)0.0334 (10)0.0054 (7)0.0049 (8)−0.0074 (8)
C110.0538 (13)0.0404 (10)0.0366 (11)0.0076 (8)0.0004 (9)−0.0181 (9)
C120.0545 (13)0.0390 (10)0.0497 (13)−0.0072 (9)0.0040 (10)−0.0225 (9)
C130.0423 (11)0.0373 (10)0.0420 (12)−0.0085 (8)0.0083 (8)−0.0154 (8)
C140.0273 (9)0.0274 (8)0.0311 (9)0.0035 (6)−0.0005 (7)−0.0081 (7)
Cl1—C31.7412 (19)Cl2—C101.742 (2)
O1—N21.433 (2)O2—N41.436 (2)
O1—H10.8200O2—H2A0.8200
N1—C71.347 (2)N3—C141.356 (2)
N1—H1B0.87 (3)N3—H3B0.92 (3)
N1—H1A0.86 (3)N3—H3A0.85 (2)
N2—C71.288 (2)N4—C141.288 (2)
C1—C21.391 (2)C8—C91.384 (3)
C1—C61.394 (3)C8—C131.399 (2)
C1—C71.485 (2)C8—C141.481 (2)
C2—C31.376 (3)C9—C101.379 (3)
C2—H20.9300C9—H90.9300
C3—C41.379 (3)C10—C111.383 (3)
C4—C51.377 (3)C11—C121.375 (3)
C4—H40.9300C11—H110.9300
C5—C61.380 (3)C12—C131.379 (3)
C5—H50.9300C12—H120.9300
C6—H60.9300C13—H130.9300
N2—O1—H1109.5N4—O2—H2A109.5
C7—N1—H1B116.7 (17)C14—N3—H3B116.1 (16)
C7—N1—H1A118.6 (17)C14—N3—H3A117.6 (15)
H1B—N1—H1A114 (2)H3B—N3—H3A117 (2)
C7—N2—O1109.78 (14)C14—N4—O2109.65 (14)
C2—C1—C6118.65 (17)C9—C8—C13118.93 (17)
C2—C1—C7119.67 (15)C9—C8—C14119.71 (15)
C6—C1—C7121.67 (16)C13—C8—C14121.36 (16)
C3—C2—C1119.83 (17)C10—C9—C8119.82 (16)
C3—C2—H2120.1C10—C9—H9120.1
C1—C2—H2120.1C8—C9—H9120.1
C2—C3—C4121.88 (17)C9—C10—C11121.64 (18)
C2—C3—Cl1118.24 (14)C9—C10—Cl2118.40 (14)
C4—C3—Cl1119.87 (15)C11—C10—Cl2119.96 (15)
C5—C4—C3118.08 (18)C12—C11—C10118.32 (18)
C5—C4—H4121.0C12—C11—H11120.8
C3—C4—H4121.0C10—C11—H11120.8
C4—C5—C6121.40 (18)C11—C12—C13121.28 (18)
C4—C5—H5119.3C11—C12—H12119.4
C6—C5—H5119.3C13—C12—H12119.4
C5—C6—C1120.15 (18)C12—C13—C8120.01 (18)
C5—C6—H6119.9C12—C13—H13120.0
C1—C6—H6119.9C8—C13—H13120.0
N2—C7—N1123.84 (17)N4—C14—N3123.71 (17)
N2—C7—C1117.48 (15)N4—C14—C8117.58 (15)
N1—C7—C1118.61 (16)N3—C14—C8118.62 (16)
D—H···AD—HH···AD···AD—H···A
O2—H2A···N4i0.822.092.811 (2)147
N3—H3B···O1ii0.92 (3)2.32 (3)3.006 (2)131 (2)
O1—H1···N2iii0.822.082.805 (2)147
N1—H1B···O2iv0.87 (3)2.36 (3)3.006 (3)132 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2A⋯N4i 0.822.092.811 (2)147
N3—H3B⋯O1ii 0.92 (3)2.32 (3)3.006 (2)131 (2)
O1—H1⋯N2iii 0.822.082.805 (2)147
N1—H1B⋯O2iv 0.87 (3)2.36 (3)3.006 (3)132 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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