Literature DB >> 23476223

2-[5-Bromo-1-(3-chloro-benz-yl)-2-methyl-1H-indol-3-yl]acetic acid.

Mahmoud Elkady1, Peter R W E F Keck, Dieter Schollmeyer, Stefan Laufer.   

Abstract

In the title compound, C18H15BrClNO2, the indole ring system forms a dihedral angle of 86.9 (2)° with the 3-chloro-benzyl ring. In the crystal, mol-ecules form inversion dimers connected via pairs of O-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 23476223      PMCID: PMC3588987          DOI: 10.1107/S1600536812046740

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activity of inhibitors for the microsomal prostaglandin E2 synthase-1 (mPGES-1) and 5-lipoxygenase (5-LO), see: Elkady et al. (2012 ▶). For details of the synthesis, see: Maguire et al. (2001 ▶).

Experimental

Crystal data

C18H15BrClNO2 M = 392.67 Triclinic, a = 8.5386 (11) Å b = 10.0157 (10) Å c = 11.0821 (12) Å α = 109.221 (8)° β = 106.229 (9)° γ = 101.886 (9)° V = 811.52 (16) Å3 Z = 2 Mo Kα radiation μ = 2.71 mm−1 T = 298 K 0.44 × 0.15 × 0.12 mm

Data collection

Stoe IPDS 2T diffractometer Absorption correction: integration (X-RED; Stoe & Cie, 2010 ▶) T min = 0.388, T max = 0.785 9139 measured reflections 4400 independent reflections 2791 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.150 S = 1.02 4400 reflections 209 parameters H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.69 e Å−3 Data collection: X-AREA (Stoe & Cie, 2010 ▶); cell refinement: X-AREA; data reduction: X-RED (Stoe & Cie, 2010 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046740/bt6855sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046740/bt6855Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046740/bt6855Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H15BrClNO2Z = 2
Mr = 392.67F(000) = 396
Triclinic, P1Dx = 1.607 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5386 (11) ÅCell parameters from 6836 reflections
b = 10.0157 (10) Åθ = 2.4–29.3°
c = 11.0821 (12) ŵ = 2.71 mm1
α = 109.221 (8)°T = 298 K
β = 106.229 (9)°Block, colourless
γ = 101.886 (9)°0.44 × 0.15 × 0.12 mm
V = 811.52 (16) Å3
Stoe IPDS 2T diffractometer4400 independent reflections
Radiation source: sealed Tube2791 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
Detector resolution: 6.67 pixels mm-1θmax = 29.3°, θmin = 2.4°
rotation method scansh = −11→11
Absorption correction: integration (X-RED; Stoe & Cie, 2010)k = −13→12
Tmin = 0.388, Tmax = 0.785l = −15→15
9139 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.069P)2 + 0.4677P] where P = (Fo2 + 2Fc2)/3
4400 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.72 e Å3
0 restraintsΔρmin = −0.69 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.98960 (7)0.99173 (4)0.68263 (5)0.0811 (2)
Cl10.82521 (16)0.14242 (15)−0.02826 (13)0.0943 (4)
N10.5804 (3)0.3419 (3)0.3758 (2)0.0436 (5)
C1A0.6557 (4)0.4936 (3)0.4301 (3)0.0398 (6)
C20.6079 (4)0.5993 (4)0.3871 (3)0.0478 (7)
H20.50970.57140.30940.057*
C30.7091 (5)0.7457 (4)0.4622 (3)0.0520 (8)
H30.68010.81880.43510.062*
C40.8553 (5)0.7865 (4)0.5788 (3)0.0516 (7)
C50.9056 (4)0.6835 (4)0.6232 (3)0.0465 (7)
H51.00370.71300.70150.056*
C5A0.8048 (4)0.5337 (3)0.5472 (3)0.0396 (6)
C60.8162 (4)0.3989 (3)0.5604 (3)0.0426 (6)
C70.6776 (4)0.2843 (3)0.4540 (3)0.0458 (7)
C80.4319 (4)0.2570 (4)0.2463 (3)0.0527 (7)
H8A0.34320.30380.24710.063*
H8B0.38480.15640.23870.063*
C90.4776 (4)0.2482 (4)0.1228 (3)0.0476 (7)
C100.6134 (4)0.2012 (4)0.1056 (3)0.0521 (7)
H100.67780.17240.16920.063*
C110.6520 (5)0.1976 (4)−0.0080 (3)0.0602 (9)
C120.5554 (6)0.2388 (5)−0.1038 (3)0.0733 (12)
H120.58330.2366−0.17970.088*
C130.4217 (6)0.2818 (5)−0.0869 (4)0.0765 (12)
H130.35600.3083−0.15190.092*
C140.3804 (5)0.2871 (5)0.0259 (3)0.0644 (9)
H140.28710.31690.03670.077*
C150.9604 (5)0.3856 (4)0.6627 (3)0.0514 (7)
H15A1.06810.44300.66460.062*
H15B0.95480.28160.63020.062*
C160.9669 (4)0.4356 (3)0.8074 (3)0.0436 (6)
O170.8593 (3)0.4791 (3)0.8448 (2)0.0632 (7)
O181.1017 (3)0.4268 (4)0.8893 (2)0.0717 (8)
H181.10120.45490.96750.108*
C190.6253 (6)0.1216 (4)0.4211 (4)0.0663 (10)
H19A0.70000.10430.49280.099*
H19B0.63390.06820.33490.099*
H19C0.50830.08710.41410.099*
U11U22U33U12U13U23
Br10.1083 (4)0.0471 (2)0.0743 (3)0.0105 (2)0.0368 (3)0.01569 (18)
Cl10.0830 (8)0.0973 (8)0.0888 (8)0.0194 (6)0.0543 (7)0.0096 (6)
N10.0509 (14)0.0486 (13)0.0299 (10)0.0130 (11)0.0149 (10)0.0167 (10)
C1A0.0468 (15)0.0489 (15)0.0299 (11)0.0190 (12)0.0183 (11)0.0185 (11)
C20.0545 (18)0.0626 (18)0.0394 (14)0.0274 (15)0.0207 (13)0.0289 (14)
C30.071 (2)0.0532 (17)0.0516 (17)0.0312 (16)0.0327 (17)0.0310 (15)
C40.067 (2)0.0444 (15)0.0469 (16)0.0165 (14)0.0307 (15)0.0172 (13)
C50.0494 (17)0.0543 (17)0.0339 (13)0.0152 (14)0.0171 (12)0.0160 (12)
C5A0.0476 (16)0.0494 (15)0.0287 (11)0.0198 (12)0.0188 (11)0.0184 (11)
C60.0575 (18)0.0530 (16)0.0280 (12)0.0266 (14)0.0198 (12)0.0213 (11)
C70.0638 (19)0.0467 (15)0.0363 (13)0.0209 (14)0.0264 (13)0.0201 (12)
C80.0466 (17)0.0630 (19)0.0382 (14)0.0075 (15)0.0134 (13)0.0171 (14)
C90.0476 (17)0.0497 (16)0.0304 (12)0.0046 (13)0.0091 (12)0.0103 (11)
C100.0514 (18)0.0563 (18)0.0382 (14)0.0070 (14)0.0151 (13)0.0149 (13)
C110.061 (2)0.0509 (17)0.0470 (17)−0.0009 (15)0.0243 (16)0.0027 (14)
C120.092 (3)0.074 (2)0.0359 (16)0.000 (2)0.0260 (19)0.0160 (16)
C130.091 (3)0.094 (3)0.0468 (19)0.026 (3)0.023 (2)0.037 (2)
C140.072 (2)0.076 (2)0.0431 (17)0.0236 (19)0.0166 (16)0.0258 (16)
C150.064 (2)0.068 (2)0.0361 (14)0.0342 (17)0.0225 (14)0.0267 (14)
C160.0503 (17)0.0512 (16)0.0351 (13)0.0191 (13)0.0156 (12)0.0235 (12)
O170.0651 (15)0.104 (2)0.0362 (11)0.0458 (15)0.0230 (11)0.0328 (12)
O180.0711 (17)0.121 (2)0.0421 (12)0.0550 (17)0.0221 (12)0.0410 (14)
C190.096 (3)0.0489 (18)0.059 (2)0.0244 (19)0.032 (2)0.0248 (16)
Br1—C41.897 (3)C8—H8B0.9700
Cl1—C111.727 (4)C9—C101.376 (5)
N1—C1A1.365 (4)C9—C141.380 (5)
N1—C71.378 (4)C10—C111.379 (5)
N1—C81.458 (4)C10—H100.9300
C1A—C21.384 (4)C11—C121.384 (6)
C1A—C5A1.411 (4)C12—C131.340 (7)
C2—C31.364 (5)C12—H120.9300
C2—H20.9300C13—C141.379 (5)
C3—C41.391 (5)C13—H130.9300
C3—H30.9300C14—H140.9300
C4—C51.375 (5)C15—C161.495 (4)
C5—C5A1.390 (4)C15—H15A0.9700
C5—H50.9300C15—H15B0.9700
C5A—C61.425 (4)C16—O171.210 (4)
C6—C71.370 (4)C16—O181.291 (4)
C6—C151.485 (4)O18—H180.8200
C7—C191.485 (4)C19—H19A0.9600
C8—C91.506 (4)C19—H19B0.9600
C8—H8A0.9700C19—H19C0.9600
C1A—N1—C7109.2 (2)C10—C9—C8120.8 (3)
C1A—N1—C8123.7 (3)C14—C9—C8119.1 (3)
C7—N1—C8126.7 (3)C9—C10—C11118.6 (3)
N1—C1A—C2130.6 (3)C9—C10—H10120.7
N1—C1A—C5A107.6 (2)C11—C10—H10120.7
C2—C1A—C5A121.8 (3)C10—C11—C12121.0 (4)
C3—C2—C1A118.1 (3)C10—C11—Cl1118.8 (3)
C3—C2—H2121.0C12—C11—Cl1120.2 (3)
C1A—C2—H2121.0C13—C12—C11119.7 (3)
C2—C3—C4120.6 (3)C13—C12—H12120.1
C2—C3—H3119.7C11—C12—H12120.1
C4—C3—H3119.7C12—C13—C14120.6 (4)
C5—C4—C3122.4 (3)C12—C13—H13119.7
C5—C4—Br1118.3 (3)C14—C13—H13119.7
C3—C4—Br1119.3 (2)C13—C14—C9119.9 (4)
C4—C5—C5A117.8 (3)C13—C14—H14120.0
C4—C5—H5121.1C9—C14—H14120.0
C5A—C5—H5121.1C6—C15—C16117.1 (3)
C5—C5A—C1A119.4 (3)C6—C15—H15A108.0
C5—C5A—C6133.6 (3)C16—C15—H15A108.0
C1A—C5A—C6107.0 (3)C6—C15—H15B108.0
C7—C6—C5A106.9 (2)C16—C15—H15B108.0
C7—C6—C15127.0 (3)H15A—C15—H15B107.3
C5A—C6—C15125.8 (3)O17—C16—O18123.3 (3)
C6—C7—N1109.2 (3)O17—C16—C15124.6 (3)
C6—C7—C19129.3 (3)O18—C16—C15112.0 (3)
N1—C7—C19121.4 (3)C16—O18—H18109.5
N1—C8—C9112.4 (3)C7—C19—H19A109.5
N1—C8—H8A109.1C7—C19—H19B109.5
C9—C8—H8A109.1H19A—C19—H19B109.5
N1—C8—H8B109.1C7—C19—H19C109.5
C9—C8—H8B109.1H19A—C19—H19C109.5
H8A—C8—H8B107.9H19B—C19—H19C109.5
C10—C9—C14120.1 (3)
C7—N1—C1A—C2179.0 (3)C15—C6—C7—C196.7 (5)
C8—N1—C1A—C25.5 (5)C1A—N1—C7—C60.5 (3)
C7—N1—C1A—C5A−0.5 (3)C8—N1—C7—C6173.8 (3)
C8—N1—C1A—C5A−174.1 (3)C1A—N1—C7—C19178.9 (3)
N1—C1A—C2—C3−179.9 (3)C8—N1—C7—C19−7.8 (5)
C5A—C1A—C2—C3−0.4 (4)C1A—N1—C8—C971.6 (4)
C1A—C2—C3—C4−0.3 (5)C7—N1—C8—C9−100.8 (4)
C2—C3—C4—C50.5 (5)N1—C8—C9—C1051.7 (4)
C2—C3—C4—Br1−178.6 (2)N1—C8—C9—C14−128.7 (3)
C3—C4—C5—C5A0.1 (5)C14—C9—C10—C111.6 (5)
Br1—C4—C5—C5A179.2 (2)C8—C9—C10—C11−178.8 (3)
C4—C5—C5A—C1A−0.8 (4)C9—C10—C11—C12−0.7 (5)
C4—C5—C5A—C6179.5 (3)C9—C10—C11—Cl1178.7 (3)
N1—C1A—C5A—C5−179.4 (2)C10—C11—C12—C13−0.5 (6)
C2—C1A—C5A—C51.0 (4)Cl1—C11—C12—C13−179.8 (3)
N1—C1A—C5A—C60.3 (3)C11—C12—C13—C140.7 (7)
C2—C1A—C5A—C6−179.2 (3)C12—C13—C14—C90.1 (7)
C5—C5A—C6—C7179.6 (3)C10—C9—C14—C13−1.3 (6)
C1A—C5A—C6—C7−0.1 (3)C8—C9—C14—C13179.1 (4)
C5—C5A—C6—C15−5.5 (5)C7—C6—C15—C16−109.5 (4)
C1A—C5A—C6—C15174.9 (3)C5A—C6—C15—C1676.6 (4)
C5A—C6—C7—N1−0.2 (3)C6—C15—C16—O173.5 (5)
C15—C6—C7—N1−175.1 (3)C6—C15—C16—O18−176.6 (3)
C5A—C6—C7—C19−178.5 (3)
D—H···AD—HH···AD···AD—H···A
O18—H18···O17i0.821.872.679 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O18—H18⋯O17i 0.821.872.679 (3)170

Symmetry code: (i) .

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