Literature DB >> 23476192

5-Chloro-1-(4-methyl-phenyl-sulfon-yl)-1H-indole.

Mohammad Hassam1, Vincent J Smith.   

Abstract

In the title compound, C15H12ClNO2S, the indole ring is essentially planar (r.m.s. deviation = 0.0107 Å) and makes a dihedral angle of 85.01 (6)° with the benzene ring. In the crystal, three C-H⋯O hydrogen bonds result in a hydrogen-bonded spiral running parallel to the c axis.

Entities:  

Year:  2012        PMID: 23476192      PMCID: PMC3588956          DOI: 10.1107/S1600536812046466

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of indoles as scaffolds in the synthesis of HIV-agents, see: Hassam et al. (2012 ▶). For the crystal structure of a closely related compound, see: Beddoes et al. (1986 ▶).

Experimental

Crystal data

C15H12ClNO2S M = 305.77 Tetragonal, a = 26.991 (7) Å c = 7.8345 (19) Å V = 5708 (2) Å3 Z = 16 Mo Kα radiation μ = 0.41 mm−1 T = 111 K 0.1 × 0.1 × 0.01 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.950, T max = 0.968 17940 measured reflections 3565 independent reflections 2760 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.101 S = 1.06 3565 reflections 182 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶; Atwood & Barbour, 2003 ▶); software used to prepare material for publication: X-SEED. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046466/pv2597sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046466/pv2597Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046466/pv2597Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12ClNO2SDx = 1.423 Mg m3
Mr = 305.77Melting point: 383 K
Tetragonal, I41/aMo Kα radiation, λ = 0.71073 Å
Hall symbol: -I 4adCell parameters from 3900 reflections
a = 26.991 (7) Åθ = 3.0–25.8°
c = 7.8345 (19) ŵ = 0.41 mm1
V = 5708 (2) Å3T = 111 K
Z = 16Plate, colourless
F(000) = 25280.1 × 0.1 × 0.01 mm
Bruker APEXII CCD diffractometer3565 independent reflections
Radiation source: fine-focus sealed tube, Bruker SMART APEXII2760 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
φ and ω scansθmax = 28.9°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −36→26
Tmin = 0.950, Tmax = 0.968k = −36→30
17940 measured reflectionsl = −10→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0395P)2 + 5.9559P] where P = (Fo2 + 2Fc2)/3
3565 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.309589 (17)0.612848 (17)0.38622 (6)0.02904 (13)
Cl10.494357 (19)0.67701 (2)0.99440 (8)0.04639 (17)
C90.27756 (6)0.66717 (7)0.4379 (2)0.0244 (4)
N10.33623 (5)0.59487 (5)0.56768 (19)0.0257 (3)
O20.27557 (6)0.57429 (5)0.34641 (19)0.0423 (4)
C10.31014 (7)0.56870 (7)0.6945 (3)0.0306 (4)
H10.28050.55050.67620.037*
C50.44798 (7)0.65358 (7)0.8611 (3)0.0304 (4)
O10.34919 (5)0.62485 (6)0.27270 (16)0.0384 (3)
C40.41247 (7)0.62301 (7)0.9286 (2)0.0299 (4)
H40.41290.61431.04610.036*
C80.37656 (6)0.61872 (6)0.6465 (2)0.0223 (3)
C60.44862 (7)0.66693 (7)0.6895 (3)0.0321 (4)
H60.47410.68790.64770.039*
C70.41247 (7)0.64987 (7)0.5795 (2)0.0282 (4)
H70.41220.65910.46250.034*
C30.37571 (6)0.60502 (6)0.8196 (2)0.0245 (4)
C110.27459 (7)0.75507 (7)0.4642 (3)0.0324 (4)
H110.28980.78650.44960.039*
C100.30006 (7)0.71282 (7)0.4162 (2)0.0290 (4)
H100.33240.71510.36920.035*
C20.33347 (7)0.57340 (7)0.8452 (2)0.0306 (4)
H20.32380.55850.94990.037*
C120.22732 (7)0.75243 (7)0.5330 (2)0.0298 (4)
C140.23055 (7)0.66336 (7)0.5066 (3)0.0325 (4)
H140.21550.63190.52150.039*
C130.20586 (7)0.70613 (8)0.5533 (3)0.0343 (4)
H130.17350.70380.60020.041*
C150.19970 (8)0.79851 (8)0.5824 (3)0.0417 (5)
H15A0.18490.79400.69560.063*
H16B0.17350.80500.49870.063*
H17C0.22270.82660.58510.063*
U11U22U33U12U13U23
S10.0320 (3)0.0321 (3)0.0230 (2)0.00953 (18)−0.00349 (18)−0.00451 (18)
Cl10.0310 (3)0.0522 (3)0.0560 (3)0.0064 (2)−0.0073 (2)−0.0294 (3)
C90.0226 (8)0.0297 (9)0.0209 (8)0.0049 (7)−0.0012 (7)−0.0012 (7)
N10.0264 (8)0.0276 (8)0.0231 (7)0.0022 (6)−0.0005 (6)0.0019 (6)
O20.0480 (9)0.0340 (8)0.0448 (9)0.0065 (6)−0.0175 (7)−0.0127 (7)
C10.0291 (10)0.0247 (9)0.0382 (10)−0.0007 (7)0.0041 (8)0.0034 (8)
C50.0243 (9)0.0296 (9)0.0375 (10)0.0075 (7)−0.0022 (8)−0.0120 (8)
O10.0414 (8)0.0520 (9)0.0218 (6)0.0217 (7)0.0058 (6)0.0028 (6)
C40.0309 (10)0.0356 (10)0.0230 (9)0.0116 (8)0.0002 (7)−0.0038 (8)
C80.0226 (8)0.0221 (8)0.0224 (8)0.0063 (6)0.0019 (7)0.0009 (6)
C60.0243 (9)0.0261 (9)0.0460 (11)0.0023 (7)0.0051 (8)−0.0002 (8)
C70.0268 (9)0.0296 (9)0.0283 (9)0.0054 (7)0.0062 (7)0.0056 (7)
C30.0262 (9)0.0243 (8)0.0230 (8)0.0079 (7)0.0039 (7)0.0019 (7)
C110.0338 (10)0.0267 (9)0.0368 (11)0.0006 (8)0.0011 (8)0.0051 (8)
C100.0234 (9)0.0347 (10)0.0287 (9)0.0025 (7)0.0048 (7)0.0051 (8)
C20.0327 (10)0.0302 (10)0.0288 (10)0.0028 (7)0.0048 (8)0.0083 (8)
C120.0312 (10)0.0360 (10)0.0221 (9)0.0096 (8)−0.0027 (7)−0.0014 (8)
C140.0240 (9)0.0331 (10)0.0405 (11)−0.0029 (7)0.0030 (8)−0.0014 (8)
C130.0219 (9)0.0430 (11)0.0379 (11)0.0040 (8)0.0075 (8)−0.0015 (9)
C150.0483 (13)0.0416 (12)0.0352 (11)0.0223 (10)−0.0008 (9)−0.0042 (9)
S1—O21.4224 (15)C6—C71.381 (3)
S1—O11.4278 (15)C6—H60.9500
S1—N11.6654 (15)C7—H70.9500
S1—C91.7496 (18)C3—C21.438 (3)
Cl1—C51.7487 (19)C11—C101.383 (3)
C9—C141.382 (2)C11—C121.387 (3)
C9—C101.384 (3)C11—H110.9500
N1—C81.407 (2)C10—H100.9500
N1—C11.408 (2)C2—H20.9500
C1—C21.345 (3)C12—C131.387 (3)
C1—H10.9500C12—C151.501 (3)
C5—C41.371 (3)C14—C131.382 (3)
C5—C61.392 (3)C14—H140.9500
C4—C31.396 (3)C13—H130.9500
C4—H40.9500C15—H15A0.9800
C8—C71.386 (2)C15—H16B0.9800
C8—C31.406 (2)C15—H17C0.9800
O2—S1—O1120.84 (9)C8—C7—H7121.3
O2—S1—N1104.64 (8)C4—C3—C8119.13 (17)
O1—S1—N1105.94 (8)C4—C3—C2133.19 (17)
O2—S1—C9110.18 (9)C8—C3—C2107.68 (16)
O1—S1—C9108.90 (9)C10—C11—C12121.37 (18)
N1—S1—C9105.07 (8)C10—C11—H11119.3
C14—C9—C10121.13 (17)C12—C11—H11119.3
C14—C9—S1118.77 (14)C11—C10—C9118.83 (17)
C10—C9—S1120.05 (13)C11—C10—H10120.6
C8—N1—C1107.88 (14)C9—C10—H10120.6
C8—N1—S1125.11 (12)C1—C2—C3107.74 (16)
C1—N1—S1122.18 (13)C1—C2—H2126.1
C2—C1—N1109.77 (17)C3—C2—H2126.1
C2—C1—H1125.1C13—C12—C11118.36 (17)
N1—C1—H1125.1C13—C12—C15120.65 (18)
C4—C5—C6122.48 (18)C11—C12—C15120.98 (19)
C4—C5—Cl1119.19 (15)C9—C14—C13118.91 (18)
C6—C5—Cl1118.33 (15)C9—C14—H14120.5
C5—C4—C3118.06 (17)C13—C14—H14120.5
C5—C4—H4121.0C14—C13—C12121.40 (17)
C3—C4—H4121.0C14—C13—H13119.3
C7—C8—C3122.42 (17)C12—C13—H13119.3
C7—C8—N1130.71 (16)C12—C15—H15A109.5
C3—C8—N1106.86 (15)C12—C15—H16B109.5
C7—C6—C5120.51 (18)H15A—C15—H16B109.5
C7—C6—H6119.7C12—C15—H17C109.5
C5—C6—H6119.7H15A—C15—H17C109.5
C6—C7—C8117.39 (17)H16B—C15—H17C109.5
C6—C7—H7121.3
O2—S1—C9—C1427.82 (18)C5—C6—C7—C8−1.0 (3)
O1—S1—C9—C14162.50 (15)C3—C8—C7—C60.9 (3)
N1—S1—C9—C14−84.38 (16)N1—C8—C7—C6−178.52 (16)
O2—S1—C9—C10−154.75 (15)C5—C4—C3—C80.1 (2)
O1—S1—C9—C10−20.06 (17)C5—C4—C3—C2−179.33 (18)
N1—S1—C9—C1093.06 (16)C7—C8—C3—C4−0.5 (3)
O2—S1—N1—C8172.54 (14)N1—C8—C3—C4179.06 (15)
O1—S1—N1—C843.81 (16)C7—C8—C3—C2179.10 (16)
C9—S1—N1—C8−71.38 (15)N1—C8—C3—C2−1.36 (18)
O2—S1—N1—C1−35.12 (16)C12—C11—C10—C90.0 (3)
O1—S1—N1—C1−163.85 (14)C14—C9—C10—C11−0.2 (3)
C9—S1—N1—C180.95 (15)S1—C9—C10—C11−177.58 (14)
C8—N1—C1—C2−2.7 (2)N1—C1—C2—C31.8 (2)
S1—N1—C1—C2−159.19 (13)C4—C3—C2—C1179.22 (19)
C6—C5—C4—C3−0.2 (3)C8—C3—C2—C1−0.3 (2)
Cl1—C5—C4—C3179.67 (13)C10—C11—C12—C130.1 (3)
C1—N1—C8—C7−178.07 (17)C10—C11—C12—C15−179.14 (18)
S1—N1—C8—C7−22.5 (3)C10—C9—C14—C130.3 (3)
C1—N1—C8—C32.45 (18)S1—C9—C14—C13177.70 (15)
S1—N1—C8—C3158.06 (12)C9—C14—C13—C12−0.2 (3)
C4—C5—C6—C70.7 (3)C11—C12—C13—C140.0 (3)
Cl1—C5—C6—C7−179.22 (14)C15—C12—C13—C14179.24 (19)
D—H···AD—HH···AD···AD—H···A
C2—H2···O2i0.952.543.327 (2)140
C4—H4···O1ii0.952.493.192 (2)131
C14—H14···O1iii0.952.593.333 (2)135
C7—H7···O10.952.443.025 (2)120
C10—H10···O10.952.592.943 (2)102
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O2i 0.952.543.327 (2)140
C4—H4⋯O1ii 0.952.493.192 (2)131
C14—H14⋯O1iii 0.952.593.333 (2)135

Symmetry codes: (i) ; (ii) ; (iii) .

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2.  1-tert-Butyl 2-ethyl 5-chloro-3-(2-furo-yl)-1H-indole-1,2-dicarboxyl-ate.

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