Literature DB >> 23424516

1-tert-Butyl 2-ethyl 5-bromo-3-(thio-phen-2-ylcarbon-yl)-1H-indole-1,2-dicarboxyl-ate.

Mohammad Hassam1, Vincent J Smith.   

Abstract

In the title compound, C(21)H(20)BrNO(5)S, the thio-phene group is located above the mean plane of the indole ring and displays rotational disorder (i.e. rotation through 180°). The site occupancy of the major component is 0.902 (2), while that of the minor component is 0.098 (2). In the crystal, pairs of weak C-H⋯O inter-actions link the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2013        PMID: 23424516      PMCID: PMC3569770          DOI: 10.1107/S1600536813000809

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of indoles as scaffolds in the synthesis of HIV-agents, see: Hassam et al. (2012 ▶) and for a recent review on stages of non-nucleoside reverse trans­criptase inhibitors, see: Reynolds et al. (2012 ▶). For the crystal structures of closely related compounds, see: Beddoes et al. (1986 ▶), Hassam & Smith (2012 ▶).

Experimental

Crystal data

C21H20BrNO5S M = 478.35 Monoclinic, a = 16.220 (3) Å b = 15.361 (3) Å c = 18.224 (4) Å β = 113.792 (2)° V = 4154.7 (15) Å3 Z = 8 Mo Kα radiation μ = 2.11 mm−1 T = 100 K 0.34 × 0.21 × 0.17 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan [symmetry-related measurements (SADABS; Bruker, 2009 ▶)] T min = 0.537, T max = 0.721 23562 measured reflections 4855 independent reflections 4101 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.066 S = 1.05 4855 reflections 279 parameters 13 restraints H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶; Atwood & Barbour, 2003 ▶); software used to prepare material for publication: X-SEED. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813000809/jj2160sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000809/jj2160Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813000809/jj2160Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H20BrNO5SF(000) = 1952
Mr = 478.35Dx = 1.530 Mg m3
Monoclinic, C2/cMelting point: 370.13 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 16.220 (3) ÅCell parameters from 6586 reflections
b = 15.361 (3) Åθ = 2.4–27.6°
c = 18.224 (4) ŵ = 2.11 mm1
β = 113.792 (2)°T = 100 K
V = 4154.7 (15) Å3Rectangular prisms, colourless
Z = 80.34 × 0.21 × 0.17 mm
Bruker APEXII CCD diffractometer4855 independent reflections
Radiation source: fine-focus sealed tube, Bruker SMART Apex4101 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
φ and ω scansθmax = 28.2°, θmin = 1.9°
Absorption correction: multi-scan [symmetry-related measurements (SADABS; Bruker, 2009)]h = −20→20
Tmin = 0.537, Tmax = 0.721k = −19→19
23562 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.066H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0296P)2 + 2.6317P] where P = (Fo2 + 2Fc2)/3
4855 reflections(Δ/σ)max = 0.001
279 parametersΔρmax = 0.38 e Å3
13 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br1−0.187401 (12)−0.022969 (12)−0.284234 (11)0.02154 (6)
O10.21832 (9)0.04217 (8)0.06003 (8)0.0220 (3)
N10.09114 (9)0.12572 (9)0.02039 (8)0.0140 (3)
C10.04334 (12)0.19832 (11)0.02894 (10)0.0143 (4)
O20.22623 (8)0.18743 (8)0.08505 (7)0.0168 (3)
C20.03540 (10)0.08118 (9)−0.04949 (10)0.0143 (3)
O30.11295 (9)0.22588 (8)0.16936 (7)0.0223 (3)
C30.05264 (11)0.00587 (10)−0.08360 (9)0.0165 (4)
H30.1083−0.0243−0.05980.020*
O40.06607 (8)0.33759 (8)0.08185 (7)0.0167 (3)
C4−0.01584 (11)−0.02275 (11)−0.15432 (10)0.0173 (4)
H4−0.0072−0.0740−0.17950.021*
O5−0.14693 (9)0.30149 (9)−0.11372 (7)0.0229 (3)
C5−0.09682 (11)0.02238 (10)−0.18879 (10)0.0167 (4)
C6−0.11345 (11)0.09814 (10)−0.15555 (9)0.0159 (4)
H6−0.16870.1289−0.18020.019*
C7−0.04550 (10)0.12713 (11)−0.08437 (9)0.0143 (3)
C8−0.03952 (12)0.20088 (11)−0.03284 (10)0.0147 (4)
C9−0.11022 (12)0.26847 (12)−0.04742 (11)0.0165 (4)
C10−0.13346 (11)0.29232 (11)0.01992 (10)0.0147 (4)
C140.07984 (11)0.25376 (11)0.10226 (11)0.0158 (4)
C150.08485 (13)0.39806 (12)0.14842 (11)0.0217 (4)
H15A0.14850.39320.18690.026*
H15B0.04570.38530.17710.026*
C160.06589 (15)0.48791 (13)0.11250 (13)0.0294 (5)
H16C0.00260.49180.07480.044*
H16A0.10470.49940.08400.044*
H16B0.07800.53100.15530.044*
C170.18541 (12)0.11267 (11)0.05822 (10)0.0159 (4)
C180.32643 (12)0.19106 (12)0.13180 (11)0.0190 (4)
C190.37308 (13)0.16063 (14)0.07930 (12)0.0249 (4)
H19C0.34710.19070.02750.037*
H19A0.36480.09770.07080.037*
H19B0.43760.17380.10560.037*
C200.34088 (14)0.28765 (13)0.14976 (13)0.0293 (5)
H20A0.30610.30630.18020.044*
H20B0.32090.32020.09930.044*
H20C0.40500.29880.18140.044*
C210.35137 (14)0.13828 (14)0.20765 (11)0.0278 (5)
H21A0.34170.07630.19400.042*
H21C0.31370.15610.23570.042*
H21B0.41490.14810.24250.042*
S1A−0.18632 (4)0.39061 (3)0.01797 (3)0.01650 (16)0.9021 (19)
C11A−0.12031 (18)0.24830 (18)0.08752 (18)0.0212 (5)0.902 (2)
H11A−0.09240.19270.09870.025*0.9021 (19)
C12A−0.1506 (2)0.2902 (3)0.1402 (3)0.0196 (4)0.9021 (19)
H12A−0.14620.26670.18990.024*0.9021 (19)
C13A−0.1874 (3)0.3695 (3)0.11084 (15)0.0161 (6)0.9021 (19)
H13A−0.21080.40840.13820.019*0.9021 (19)
S1B−0.1088 (5)0.2256 (4)0.1026 (3)0.01650 (16)0.0979 (19)
C11B−0.1782 (13)0.3643 (9)0.0245 (15)0.0212 (5)0.0979 (19)
H11B−0.19710.4082−0.01570.025*0.0979 (19)
C12B−0.194 (3)0.368 (3)0.0944 (18)0.0161 (6)0.0979 (19)
H12B−0.22510.41490.10650.019*0.0979 (19)
C13B−0.161 (2)0.298 (2)0.143 (3)0.0196 (4)0.0979 (19)
H13B−0.16550.28950.19300.024*0.0979 (19)
U11U22U33U12U13U23
Br10.01920 (10)0.02324 (11)0.01899 (10)−0.00231 (8)0.00438 (7)−0.00483 (7)
O10.0186 (7)0.0174 (7)0.0266 (7)0.0045 (5)0.0056 (6)−0.0011 (5)
N10.0133 (7)0.0144 (7)0.0138 (7)0.0008 (6)0.0051 (6)−0.0017 (6)
C10.0166 (9)0.0130 (8)0.0164 (9)0.0025 (7)0.0099 (7)0.0014 (7)
O20.0136 (6)0.0167 (6)0.0178 (6)−0.0006 (5)0.0040 (5)−0.0017 (5)
C20.0147 (8)0.0139 (8)0.0145 (8)−0.0028 (7)0.0061 (7)0.0000 (7)
O30.0296 (7)0.0216 (7)0.0148 (7)0.0044 (6)0.0078 (6)0.0005 (5)
C30.0165 (9)0.0145 (9)0.0199 (9)0.0022 (7)0.0087 (7)0.0006 (7)
O40.0196 (6)0.0139 (6)0.0158 (6)−0.0004 (5)0.0062 (5)−0.0028 (5)
C40.0213 (9)0.0141 (8)0.0189 (9)−0.0002 (7)0.0106 (8)−0.0022 (7)
O50.0266 (7)0.0251 (7)0.0167 (7)0.0076 (6)0.0084 (6)0.0043 (5)
C50.0176 (9)0.0186 (9)0.0138 (8)−0.0040 (7)0.0065 (7)−0.0013 (7)
C60.0152 (9)0.0179 (9)0.0158 (9)0.0003 (7)0.0075 (7)0.0019 (7)
C70.0158 (9)0.0143 (8)0.0158 (9)0.0009 (7)0.0093 (7)0.0016 (7)
C80.0185 (9)0.0143 (8)0.0146 (9)0.0008 (7)0.0103 (7)0.0010 (7)
C90.0154 (9)0.0165 (9)0.0183 (9)−0.0005 (7)0.0074 (7)−0.0011 (7)
C100.0116 (8)0.0154 (8)0.0172 (9)0.0019 (7)0.0059 (7)−0.0003 (7)
C140.0131 (8)0.0175 (9)0.0193 (9)0.0013 (7)0.0091 (7)−0.0015 (7)
C150.0258 (10)0.0202 (10)0.0167 (9)−0.0030 (8)0.0060 (8)−0.0082 (7)
C160.0334 (12)0.0202 (10)0.0264 (11)0.0014 (9)0.0034 (9)−0.0064 (8)
C170.0172 (9)0.0186 (9)0.0124 (8)0.0006 (7)0.0068 (7)0.0005 (7)
C180.0128 (8)0.0260 (10)0.0161 (9)−0.0030 (7)0.0036 (7)−0.0009 (7)
C190.0187 (10)0.0322 (11)0.0250 (10)0.0017 (8)0.0100 (8)0.0047 (9)
C200.0249 (11)0.0277 (11)0.0309 (11)−0.0083 (9)0.0068 (9)−0.0066 (9)
C210.0235 (10)0.0381 (12)0.0178 (10)−0.0044 (9)0.0043 (8)0.0046 (9)
S1A0.0180 (3)0.0143 (3)0.0192 (3)0.0051 (2)0.0095 (2)0.0010 (2)
C11A0.0184 (13)0.0143 (13)0.0291 (14)0.0058 (10)0.0080 (11)0.0014 (10)
C12A0.0206 (13)0.0209 (13)0.0189 (10)0.0016 (10)0.0096 (10)0.0000 (8)
C13A0.0188 (12)0.0188 (9)0.0142 (15)0.0031 (9)0.0102 (14)−0.0018 (14)
S1B0.0180 (3)0.0143 (3)0.0192 (3)0.0051 (2)0.0095 (2)0.0010 (2)
C11B0.0184 (13)0.0143 (13)0.0291 (14)0.0058 (10)0.0080 (11)0.0014 (10)
C12B0.0188 (12)0.0188 (9)0.0142 (15)0.0031 (9)0.0102 (14)−0.0018 (14)
C13B0.0206 (13)0.0209 (13)0.0189 (10)0.0016 (10)0.0096 (10)0.0000 (8)
Br1—C51.8993 (17)C15—H15A0.9900
O1—C171.202 (2)C15—H15B0.9900
N1—C11.402 (2)C16—H16C0.9800
N1—C21.406 (2)C16—H16A0.9800
N1—C171.415 (2)C16—H16B0.9800
C1—C81.362 (2)C18—C211.510 (3)
C1—C141.491 (2)C18—C191.514 (3)
O2—C171.317 (2)C18—C201.517 (3)
O2—C181.501 (2)C19—H19C0.9800
C2—C31.3940 (15)C19—H19A0.9800
C2—C71.3968 (15)C19—H19B0.9800
O3—C141.199 (2)C20—H20A0.9800
C3—C41.3903 (16)C20—H20B0.9800
C3—H30.9500C20—H20C0.9800
O4—C141.334 (2)C21—H21A0.9800
O4—C151.459 (2)C21—H21C0.9800
C4—C51.3909 (16)C21—H21B0.9800
C4—H40.9500S1A—C13A1.730 (3)
O5—C91.221 (2)C11A—C12A1.400 (3)
C5—C61.3878 (15)C11A—H11A0.9500
C6—C71.3935 (16)C12A—C13A1.367 (3)
C6—H60.9500C12A—H12A0.9500
C7—C81.450 (2)C13A—H13A0.9500
C8—C91.489 (2)S1B—C13B1.730 (3)
C9—C101.468 (2)C11B—C12B1.400 (4)
C10—C11B1.344 (4)C11B—H11B0.9500
C10—C11A1.345 (3)C12B—C13B1.367 (3)
C10—S1A1.7297 (17)C12B—H12B0.9500
C10—S1B1.730 (2)C13B—H13B0.9500
C15—C161.505 (3)
C1—N1—C2107.77 (13)H16C—C16—H16A109.5
C1—N1—C17126.56 (15)C15—C16—H16B109.5
C2—N1—C17123.07 (13)H16C—C16—H16B109.5
C8—C1—N1109.67 (15)H16A—C16—H16B109.5
C8—C1—C14128.83 (16)O1—C17—O2128.62 (17)
N1—C1—C14121.09 (15)O1—C17—N1121.44 (16)
C17—O2—C18120.67 (14)O2—C17—N1109.86 (15)
C3—C2—C7122.48 (14)O2—C18—C21109.18 (15)
C3—C2—N1129.51 (13)O2—C18—C19109.43 (14)
C7—C2—N1108.00 (12)C21—C18—C19113.28 (17)
C4—C3—C2116.55 (15)O2—C18—C20101.33 (14)
C4—C3—H3121.7C21—C18—C20111.51 (16)
C2—C3—H3121.7C19—C18—C20111.42 (16)
C14—O4—C15115.31 (14)C18—C19—H19C109.5
C3—C4—C5121.11 (15)C18—C19—H19A109.5
C3—C4—H4119.4H19C—C19—H19A109.5
C5—C4—H4119.4C18—C19—H19B109.5
C6—C5—C4122.36 (15)H19C—C19—H19B109.5
C6—C5—Br1119.51 (11)H19A—C19—H19B109.5
C4—C5—Br1118.13 (11)C18—C20—H20A109.5
C5—C6—C7117.02 (15)C18—C20—H20B109.5
C5—C6—H6121.5H20A—C20—H20B109.5
C7—C6—H6121.5C18—C20—H20C109.5
C6—C7—C2120.47 (14)H20A—C20—H20C109.5
C6—C7—C8132.37 (15)H20B—C20—H20C109.5
C2—C7—C8107.16 (14)C18—C21—H21A109.5
C1—C8—C7107.38 (15)C18—C21—H21C109.5
C1—C8—C9126.85 (16)H21A—C21—H21C109.5
C7—C8—C9125.72 (15)C18—C21—H21B109.5
O5—C9—C10122.43 (16)H21A—C21—H21B109.5
O5—C9—C8119.94 (16)H21C—C21—H21B109.5
C10—C9—C8117.62 (15)C10—S1A—C13A90.96 (18)
C11B—C10—C11A104.3 (12)C10—C11A—C12A115.3 (3)
C11B—C10—C9125.8 (12)C10—C11A—H11A122.3
C11A—C10—C9129.86 (16)C12A—C11A—H11A122.3
C11A—C10—S1A110.60 (15)C13A—C12A—C11A111.1 (4)
C9—C10—S1A119.53 (12)C13A—C12A—H12A124.5
C11B—C10—S1B112.0 (12)C11A—C12A—H12A124.5
C9—C10—S1B122.2 (3)C12A—C13A—S1A112.1 (4)
S1A—C10—S1B118.3 (3)C12A—C13A—H13A124.0
O3—C14—O4125.80 (16)S1A—C13A—H13A124.0
O3—C14—C1124.23 (16)C13B—S1B—C1090.7 (19)
O4—C14—C1109.90 (15)C10—C11B—C12B113 (3)
O4—C15—C16106.54 (15)C10—C11B—H11B123.4
O4—C15—H15A110.4C12B—C11B—H11B123.4
C16—C15—H15A110.4C13B—C12B—C11B113 (4)
O4—C15—H15B110.4C13B—C12B—H12B123.6
C16—C15—H15B110.4C11B—C12B—H12B123.6
H15A—C15—H15B108.6C12B—C13B—S1B111 (4)
C15—C16—H16C109.5C12B—C13B—H13B124.4
C15—C16—H16A109.5S1B—C13B—H13B124.4
C2—N1—C1—C8−0.25 (19)C8—C9—C10—S1B−19.6 (4)
C17—N1—C1—C8161.74 (16)C15—O4—C14—O3−6.9 (2)
C2—N1—C1—C14173.05 (15)C15—O4—C14—C1170.13 (14)
C17—N1—C1—C14−25.0 (3)C8—C1—C14—O3127.0 (2)
C1—N1—C2—C3179.52 (17)N1—C1—C14—O3−44.9 (3)
C17—N1—C2—C316.8 (3)C8—C1—C14—O4−50.1 (2)
C1—N1—C2—C71.06 (19)N1—C1—C14—O4138.06 (16)
C17—N1—C2—C7−161.70 (15)C14—O4—C15—C16179.51 (15)
C7—C2—C3—C4−1.0 (3)C18—O2—C17—O1−6.5 (3)
N1—C2—C3—C4−179.25 (17)C18—O2—C17—N1176.60 (14)
C2—C3—C4—C50.3 (3)C1—N1—C17—O1165.06 (17)
C3—C4—C5—C60.7 (3)C2—N1—C17—O1−35.5 (3)
C3—C4—C5—Br1−178.72 (14)C1—N1—C17—O2−17.8 (2)
C4—C5—C6—C7−1.1 (3)C2—N1—C17—O2141.64 (15)
Br1—C5—C6—C7178.34 (12)C17—O2—C18—C21−61.6 (2)
C5—C6—C7—C20.4 (2)C17—O2—C18—C1962.9 (2)
C5—C6—C7—C8−178.75 (17)C17—O2—C18—C20−179.30 (15)
C3—C2—C7—C60.6 (3)C11B—C10—S1A—C13A24 (8)
N1—C2—C7—C6179.21 (15)C11A—C10—S1A—C13A0.89 (19)
C3—C2—C7—C8179.98 (16)C9—C10—S1A—C13A−179.27 (18)
N1—C2—C7—C8−1.43 (19)S1B—C10—S1A—C13A0.2 (3)
N1—C1—C8—C7−0.63 (19)C11B—C10—C11A—C12A−3.2 (11)
C14—C1—C8—C7−173.26 (16)C9—C10—C11A—C12A179.8 (2)
N1—C1—C8—C9−178.36 (16)S1A—C10—C11A—C12A−0.4 (3)
C14—C1—C8—C99.0 (3)S1B—C10—C11A—C12A175 (3)
C6—C7—C8—C1−179.46 (18)C10—C11A—C12A—C13A−0.5 (3)
C2—C7—C8—C11.28 (19)C11A—C12A—C13A—S1A1.2 (2)
C6—C7—C8—C9−1.7 (3)C10—S1A—C13A—C12A−1.20 (17)
C2—C7—C8—C9179.04 (16)C11B—C10—S1B—C13B0.0 (4)
C1—C8—C9—O5131.0 (2)C11A—C10—S1B—C13B−2 (3)
C7—C8—C9—O5−46.3 (3)C9—C10—S1B—C13B−177.5 (11)
C1—C8—C9—C10−49.4 (3)S1A—C10—S1B—C13B3.1 (10)
C7—C8—C9—C10133.27 (18)C11A—C10—C11B—C12B0.3 (6)
O5—C9—C10—C11B−17.3 (12)C9—C10—C11B—C12B177.4 (11)
C8—C9—C10—C11B163.2 (11)S1A—C10—C11B—C12B−157 (8)
O5—C9—C10—C11A159.1 (2)S1B—C10—C11B—C12B0.0 (5)
C8—C9—C10—C11A−20.4 (3)C10—C11B—C12B—C13B0.0 (3)
O5—C9—C10—S1A−20.7 (2)C11B—C12B—C13B—S1B0.0 (2)
C8—C9—C10—S1A159.78 (13)C10—S1B—C13B—C12B0.0 (3)
O5—C9—C10—S1B159.9 (3)
D—H···AD—HH···AD···AD—H···A
C12A—H12A···O3i0.952.483.418 (5)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C12A—H12A⋯O3i 0.952.483.418 (5)169

Symmetry code: (i) .

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