Literature DB >> 23474464

Plasmid R6K replication control.

Sheryl A Rakowski1, Marcin Filutowicz.   

Abstract

The focus of this minireview is the replication control of the 39.9-kb plasmid R6K and its derivatives. Historically, this plasmid was thought to have a narrow host range but more recent findings indicate that its derivatives can replicate in a variety of enteric and non-enteric bacterial species (Wild et al., 2004). In the four-plus decades since it was first described, R6K has proven to be an excellent model for studies of plasmid DNA replication. In part this is because of its similarities to other systems in which replication is activated and regulated by Rep protein and iteron-containing DNA. However its apparent idiosynchracies have also added to its significance (e.g., independent and co-dependent replication origins, and Rep dimers that stably bind iterons). Here, we survey the current state of knowledge regarding R6K replication and place individual regulatory elements into a proposed homeostatic model with implications for the biological significance of R6K and its multiple origins of replication.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23474464      PMCID: PMC3691012          DOI: 10.1016/j.plasmid.2013.02.003

Source DB:  PubMed          Journal:  Plasmid        ISSN: 0147-619X            Impact factor:   3.466


  108 in total

Review 1.  Control of plasmid DNA replication by iterons: no longer paradoxical.

Authors:  D K Chattoraj
Journal:  Mol Microbiol       Date:  2000-08       Impact factor: 3.501

2.  A conformational switch between transcriptional repression and replication initiation in the RepA dimerization domain.

Authors:  Rafael Giraldo; Carlos Fernández-Tornero; Philip R Evans; Ramón Díaz-Orejas; Antonio Romero
Journal:  Nat Struct Biol       Date:  2003-07

3.  Roles of a 106-bp origin enhancer and Escherichia coli DnaA protein in replication of plasmid R6K.

Authors:  F Wu; I Goldberg; M Filutowicz
Journal:  Nucleic Acids Res       Date:  1992-02-25       Impact factor: 16.971

4.  The DnaK-DnaJ-GrpE chaperone system activates inert wild type pi initiator protein of R6K into a form active in replication initiation.

Authors:  Shamsu Zzaman; Jagan M Reddy; Deepak Bastia
Journal:  J Biol Chem       Date:  2004-10-13       Impact factor: 5.157

5.  Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein.

Authors:  S Mukherjee; H Erickson; D Bastia
Journal:  Cell       Date:  1988-02-12       Impact factor: 41.582

6.  The replication initiator protein of plasmid R6K tagged with beta-galactosidase shows sequence-specific DNA-binding.

Authors:  J Germino; D Bastia
Journal:  Cell       Date:  1983-01       Impact factor: 41.582

7.  Replication initiation at a distance: determination of the cis- and trans-acting elements of replication origin alpha of plasmid R6K.

Authors:  Mukesh Saxena; Mayuresh Abhyankar; Deepak Bastia
Journal:  J Biol Chem       Date:  2009-12-15       Impact factor: 5.157

8.  Interaction of the plasmid R6K-encoded replication initiator protein with its binding sites on DNA.

Authors:  J Germino; D Bastia
Journal:  Cell       Date:  1983-08       Impact factor: 41.582

9.  Mutations in direct repeat sequences and in a conserved sequence adjacent to the repeats result in a defective replication origin in plasmid R6K.

Authors:  M J McEachern; M Filutowicz; D R Helinski
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

10.  Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance.

Authors:  A Miron; S Mukherjee; D Bastia
Journal:  EMBO J       Date:  1992-03       Impact factor: 11.598

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Journal:  Microbiol Spectr       Date:  2015-02

Review 2.  Mobile Genetic Elements Associated with Antimicrobial Resistance.

Authors:  Sally R Partridge; Stephen M Kwong; Neville Firth; Slade O Jensen
Journal:  Clin Microbiol Rev       Date:  2018-08-01       Impact factor: 26.132

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Authors:  Jennifer F Carr; Michael E Danziger; Athena L Huang; Albert E Dahlberg; Steven T Gregory
Journal:  J Bacteriol       Date:  2015-01-20       Impact factor: 3.490

4.  Golden Gate Assembly of Aerobic and Anaerobic Microbial Bioreporters.

Authors:  Aaron J Hinz; Benjamin Stenzler; Alexandre J Poulain
Journal:  Appl Environ Microbiol       Date:  2021-10-27       Impact factor: 5.005

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Authors:  Nick Matinyan; Mansi S Karkhanis; Yezabel Gonzalez; Antrix Jain; Alexander Saltzman; Anna Malovannaya; Alejandro Sarrion-Perdigones; Herman A Dierick; Koen J T Venken
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Review 6.  Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy.

Authors:  Masaki Shintani; Zoe K Sanchez; Kazuhide Kimbara
Journal:  Front Microbiol       Date:  2015-03-31       Impact factor: 5.640

7.  Novel "Superspreader" Bacteriophages Promote Horizontal Gene Transfer by Transformation.

Authors:  Eric C Keen; Valery V Bliskovsky; Francisco Malagon; James D Baker; Jeffrey S Prince; James S Klaus; Sankar L Adhya
Journal:  MBio       Date:  2017-01-17       Impact factor: 7.867

8.  Identification of another module involved in the horizontal transfer of the Haemophilus genomic island ICEHin1056.

Authors:  Mario Juhas; Ioanna Dimopoulou; Esther Robinson; Abdel Elamin; Rosalind Harding; Derek Hood; Derrick Crook
Journal:  Plasmid       Date:  2013-06-10       Impact factor: 3.466

Review 9.  Replisome Assembly at Bacterial Chromosomes and Iteron Plasmids.

Authors:  Katarzyna E Wegrzyn; Marta Gross; Urszula Uciechowska; Igor Konieczny
Journal:  Front Mol Biosci       Date:  2016-08-11

10.  Development of an Acid-Resistant Salmonella Typhi Ty21a Attenuated Vector For Improved Oral Vaccine Delivery.

Authors:  Madushini N Dharmasena; Catherine M Feuille; Carly Elizabeth C Starke; Arvind A Bhagwat; Scott Stibitz; Dennis J Kopecko
Journal:  PLoS One       Date:  2016-09-27       Impact factor: 3.240

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