Literature DB >> 23473304

DXP reductoisomerase: reaction of the substrate in pieces reveals a catalytic role for the nonreacting phosphodianion group.

Svetlana A Kholodar1, Andrew S Murkin.   

Abstract

The role of the nonreacting phosphodianion group of 1-deoxy-d-xylulose-5-phosphate (DXP) in catalysis by DXP reductoisomerase (DXR) was investigated for the reaction of the "substrate in pieces". The truncated substrate 1-deoxy-l-erythrulose is converted by DXR to 2-C-methylglycerol with a kcat/Km that is 10(6)-fold lower than that for DXP. Phosphite dianion was found to be a nonessential activator, providing 3.2 kcal/mol of transition state stabilization for the truncated substrate. These results implicate a phosphate-driven conformational change involving loop closure over the DXR active site to generate an environment poised for catalysis.

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Year:  2013        PMID: 23473304     DOI: 10.1021/bi400092n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Structural mutations that probe the interactions between the catalytic and dianion activation sites of triosephosphate isomerase.

Authors:  Xiang Zhai; Tina L Amyes; Rik K Wierenga; J Patrick Loria; John P Richard
Journal:  Biochemistry       Date:  2013-08-16       Impact factor: 3.162

Review 2.  Enabling Role of Ligand-Driven Conformational Changes in Enzyme Evolution.

Authors:  John P Richard
Journal:  Biochemistry       Date:  2022-07-13       Impact factor: 3.321

3.  Enzyme architecture: the activating oxydianion binding domain for orotidine 5'-monophophate decarboxylase.

Authors:  Krisztina Spong; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2013-11-27       Impact factor: 15.419

4.  Enzyme architecture: deconstruction of the enzyme-activating phosphodianion interactions of orotidine 5'-monophosphate decarboxylase.

Authors:  Lawrence M Goldman; Tina L Amyes; Bogdana Goryanova; John A Gerlt; John P Richard
Journal:  J Am Chem Soc       Date:  2014-07-02       Impact factor: 15.419

5.  The activating oxydianion binding domain for enzyme-catalyzed proton transfer, hydride transfer, and decarboxylation: specificity and enzyme architecture.

Authors:  Archie C Reyes; Xiang Zhai; Kelsey T Morgan; Christopher J Reinhardt; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2015-01-20       Impact factor: 15.419

6.  The role of phosphate in a multistep enzymatic reaction: reactions of the substrate and intermediate in pieces.

Authors:  Svetlana A Kholodar; C Leigh Allen; Andrew M Gulick; Andrew S Murkin
Journal:  J Am Chem Soc       Date:  2015-02-10       Impact factor: 15.419

7.  Enzyme architecture: remarkably similar transition states for triosephosphate isomerase-catalyzed reactions of the whole substrate and the substrate in pieces.

Authors:  Xiang Zhai; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2014-03-06       Impact factor: 15.419

8.  Alteration of the flexible loop in 1-deoxy-D-xylulose-5-phosphate reductoisomerase boosts enthalpy-driven inhibition by fosmidomycin.

Authors:  Svetlana A Kholodar; Gregory Tombline; Juan Liu; Zhesen Tan; C Leigh Allen; Andrew M Gulick; Andrew S Murkin
Journal:  Biochemistry       Date:  2014-05-22       Impact factor: 3.162

9.  Enzyme architecture: the effect of replacement and deletion mutations of loop 6 on catalysis by triosephosphate isomerase.

Authors:  Xiang Zhai; Maybelle K Go; AnnMarie C O'Donoghue; Tina L Amyes; Scott D Pegan; Yan Wang; J Patrick Loria; Andrew D Mesecar; John P Richard
Journal:  Biochemistry       Date:  2014-05-22       Impact factor: 3.162

10.  Role of Loop-Clamping Side Chains in Catalysis by Triosephosphate Isomerase.

Authors:  Xiang Zhai; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2015-11-30       Impact factor: 15.419

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