Literature DB >> 23473108

Benchmark studies on the building blocks of DNA. 3. Watson-Crick and stacked base pairs.

Péter G Szalay1, Thomas Watson, Ajith Perera, Victor Lotrich, Rodney J Bartlett.   

Abstract

Excited states of stacked adenine-thymine and guanine-cytosine pairs as well as the Watson-Crick pair of guanine-thymine have been investigated using the equation of motion coupled-cluster (EOM-CC) method with single and double as well as approximate triple excitations. Transitions have been assigned, and the form of the excitations has been analyzed. The majority of the excitations could be classified as localized on the nucleobases, but for all three studied systems, charge-transfer (CT) transitions could also be identified. The main aim of this study was to compare the performance of lower-level methods (ADC(2) and TDDFT) to the high-level EOM-CC ones. It was shown that both ADC(2) and TDDFT with long-range correction have nonsystematic error in excitation energies, causing alternation of the energetic ordering of the excitations. Considering the high costs of the EOM-CC calculations, there is a need for reliable new approximate methods.

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Year:  2013        PMID: 23473108     DOI: 10.1021/jp3100975

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  2 in total

1.  Benchmarking coupled cluster methods on singlet excited states of nucleobases.

Authors:  Dániel Kánnár; Péter G Szalay
Journal:  J Mol Model       Date:  2014-11-14       Impact factor: 1.810

2.  Excited States of One-Electron Oxidized Guanine-Cytosine Base Pair Radicals: A Time Dependent Density Functional Theory Study.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem A       Date:  2019-04-02       Impact factor: 2.781

  2 in total

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