Literature DB >> 23470899

Technical note: proteomic approaches to fundamental questions about neutrophil biology.

Kenneth R McLeish1, Michael L Merchant, Jon B Klein, Richard A Ward.   

Abstract

Proteomics is one of a group of technologies that generates high-throughput, large-scale datasets that can be used to understand cell or organ functions at a systems level. This review will focus on the application of proteomics to the understanding of neutrophil biology. The strengths and weaknesses of common proteomic methods and their application to neutrophils are reviewed, with the goal of evaluating whether the technology is ready to advance our understanding of neutrophil biology.

Keywords:  electrospray ionization; liquid chromatography; mass spectrometry

Mesh：

Substances：

Year:  2013        PMID： 23470899      PMCID： PMC4051262          DOI： 10.1189/jlb.1112591

Source DB:  PubMed          Journal:  J Leukoc Biol        ISSN： 0741-5400            Impact factor:   4.962


  62 in total

1.  Interfacing the orbitrap mass analyzer to an electrospray ion source.

Authors:  Mark Hardman; Alexander A Makarov
Journal:  Anal Chem       Date:  2003-04-01       Impact factor: 6.986

Review 2.  Mass spectral analysis in proteomics.

Authors:  John R Yates
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

3.  Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research.

Authors:  Sebastian Wiese; Kai A Reidegeld; Helmut E Meyer; Bettina Warscheid
Journal:  Proteomics       Date:  2007-02       Impact factor: 3.984

Review 4.  Proteomics by mass spectrometry: approaches, advances, and applications.

Authors:  John R Yates; Cristian I Ruse; Aleksey Nakorchevsky
Journal:  Annu Rev Biomed Eng       Date:  2009       Impact factor: 9.590

5.  Myeloid-related protein-14 is a p38 MAPK substrate in human neutrophils.

Authors:  George Lominadze; Madhavi J Rane; Michael Merchant; Jian Cai; Richard A Ward; Kenneth R McLeish
Journal:  J Immunol       Date:  2005-06-01       Impact factor: 5.422

6.  VASP is a CXCR2-interacting protein that regulates CXCR2-mediated polarization and chemotaxis.

Authors:  Nicole F Neel; Melanie Barzik; Dayanidhi Raman; Tammy Sobolik-Delmaire; Jiqing Sai; Amy J Ham; Raymond L Mernaugh; Frank B Gertler; Ann Richmond
Journal:  J Cell Sci       Date:  2009-05-12       Impact factor: 5.285

Review 7.  Mass spectrometry for proteomics.

Authors:  Xuemei Han; Aaron Aslanian; John R Yates
Journal:  Curr Opin Chem Biol       Date:  2008-10       Impact factor: 8.822

8.  Detection of crosslinks within and between proteins by LC-MALDI-TOFTOF and the software FINDX to reduce the MSMS-data to acquire for validation.

Authors:  Christopher A G Söderberg; Wietske Lambert; Sven Kjellström; Alena Wiegandt; Ragna Peterson Wulff; Cecilia Månsson; Gudrun Rutsdottir; Cecilia Emanuelsson
Journal:  PLoS One       Date:  2012-06-18       Impact factor: 3.240

9.  A systems biology approach to infectious disease research: innovating the pathogen-host research paradigm.

Authors:  Alan Aderem; Joshua N Adkins; Charles Ansong; James Galagan; Shari Kaiser; Marcus J Korth; G Lynn Law; Jason G McDermott; Sean C Proll; Carrie Rosenberger; Gary Schoolnik; Michael G Katze
Journal:  mBio       Date:  2011-03-01       Impact factor: 7.867

10.  Transcriptome kinetics of circulating neutrophils during human experimental endotoxemia.

Authors:  Stan de Kleijn; Matthijs Kox; Iziah Edwin Sama; Janesh Pillay; Angela van Diepen; Martijn A Huijnen; Johannes G van der Hoeven; Gerben Ferwerda; Peter W M Hermans; Peter Pickkers
Journal:  PLoS One       Date:  2012-06-05       Impact factor: 3.240
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  10 in total

Review 1.  Isolation and characterization of urinary extracellular vesicles: implications for biomarker discovery.

Authors:  Michael L Merchant; Ilse M Rood; Jeroen K J Deegens; Jon B Klein
Journal:  Nat Rev Nephrol       Date:  2017-10-30       Impact factor: 28.314

Review 2.  Big insights from small volumes: deciphering complex leukocyte behaviors using microfluidics.

Authors:  Daniel Irimia; Felix Ellett
Journal:  J Leukoc Biol       Date:  2016-05-18       Impact factor: 4.962

3.  The Peripheral Blood Eosinophil Proteome.

Authors:  Emily M Wilkerson; Mats W Johansson; Alexander S Hebert; Michael S Westphall; Sameer K Mathur; Nizar N Jarjour; Elizabeth A Schwantes; Deane F Mosher; Joshua J Coon
Journal:  J Proteome Res       Date:  2016-04-01       Impact factor: 4.466

4.  Proteomic analysis of peripheral blood polymorphonuclear cells (PBMCs) reveals alteration of neutrophil extracellular trap (NET) components in uncontrolled diabetes.

Authors:  J Soongsathitanon; W Umsa-Ard; V Thongboonkerd
Journal:  Mol Cell Biochem       Date:  2019-07-04       Impact factor: 3.842

5.  Frontline Science: Employing enzymatic treatment options for management of ocular biofilm-based infections.

Authors:  Abirami Kugadas; Jennifer Geddes-McAlister; Emilia Guy; Antonio DiGiandomenico; David B Sykes; Michael K Mansour; Rossen Mirchev; Mihaela Gadjeva
Journal:  J Leukoc Biol       Date:  2019-01-28       Impact factor: 4.962

6.  C5a impairs phagosomal maturation in the neutrophil through phosphoproteomic remodeling.

Authors:  Alexander Jt Wood; Arlette M Vassallo; Marie-Hélène Ruchaud-Sparagano; Jonathan Scott; Carmelo Zinnato; Carmen Gonzalez-Tejedo; Kamal Kishore; Clive S D'Santos; A John Simpson; David K Menon; Charlotte Summers; Edwin R Chilvers; Klaus Okkenhaug; Andrew Conway Morris
Journal:  JCI Insight       Date:  2020-08-06

Review 7.  β2 Integrin Signaling Cascade in Neutrophils: More Than a Single Function.

Authors:  Panagiota Bouti; Steven D S Webbers; Susanna C Fagerholm; Ronen Alon; Markus Moser; Hanke L Matlung; Taco W Kuijpers
Journal:  Front Immunol       Date:  2021-02-18       Impact factor: 7.561

8.  Age-related decline in the resistance of mice to bacterial infection and in LPS/TLR4 pathway-dependent neutrophil responses.

Authors:  Kirsti Hornigold; Julia Y Chu; Stephen A Chetwynd; Polly A Machin; Laraine Crossland; Chiara Pantarelli; Karen E Anderson; Phillip T Hawkins; Anne Segonds-Pichon; David Oxley; Heidi C E Welch
Journal:  Front Immunol       Date:  2022-08-24       Impact factor: 8.786

9.  Predicted effects of observed changes in the mRNA and microRNA transcriptome of lung neutrophils during S. pneumoniae pneumonia in mice.

Authors:  John C Gomez; Hong Dang; Matthew Kanke; Robert S Hagan; Jason R Mock; Samir N P Kelada; Praveen Sethupathy; Claire M Doerschuk
Journal:  Sci Rep       Date:  2017-09-12       Impact factor: 4.379

10.  Standardizing Proteomics Workflow for Liquid Chromatography-Mass Spectrometry: Technical and Statistical Considerations.

Authors:  Sudhir Srivastava; Michael Merchant; Anil Rai; Shesh N Rai
Journal:  J Proteomics Bioinform       Date:  2019-04-04
  10 in total

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