| Literature DB >> 23469236 |
Rosy Mondal1, Sankar Kumar Ghosh, Javed Hussain Choudhury, Anil Seram, Kavita Sinha, Marine Hussain, Ruhina Shirin Laskar, Bijuli Rabha, Pradip Dey, Sabitri Ganguli, Monisha Nathchoudhury, Fazlur Rahman Talukdar, Biswadeep Chaudhuri, Bishal Dhar.
Abstract
BACKGROUND: Oral squamous cell carcinoma (OSCC) is the sixth most common cancer globally. Tobacco consumption and HPV infection, both are the major risk factor for the development of oral cancer and causes mitochondrial dysfunction. Genetic polymorphisms in xenobiotic-metabolizing enzymes modify the effect of environmental exposures, thereby playing a significant role in gene-environment interactions and hence contributing to the individual susceptibility to cancer. Here, we have investigated the association of tobacco - betel quid chewing, HPV infection, GSTM1-GSTT1 null genotypes, and tumour stages with mitochondrial DNA (mtDNA) content variation in oral cancer patients. METHODOLOGY/PRINCIPALEntities:
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Year: 2013 PMID: 23469236 PMCID: PMC3587625 DOI: 10.1371/journal.pone.0057771
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Selected characteristics of OSCC subjects and controls.
| Characteristics | Subjects |
| |
| Cases(n = 124) (%) | Control(n = 140) (%) | ||
|
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| Median | 58 | 56 | 0.82 |
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| Male | 98(79) | 101(72.1) | 0.2 |
| Female | 26(20.9) | 39(27.8) | |
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| <Once per week | 23(18.5) | 12(8.5) | 0.04 |
| 1–6 per week | 61(49.1) | 79(56.4) | |
| >1 per day | 40(32.2) | 53(37.8) | |
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| <Once per week | 58(46.7) | 63(45) | 0.94 |
| 1–6 per week | 53(42.7) | 61(43.5) | |
| >1 per day | 13(10.4) | 16(11.4) | |
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| <Once per week | 12(9.7) | 16(11.4) | 0.77 |
| 1–6 per week | 63(50.8) | 82(58.5) | |
| >1 per day | 39(31.4) | 42(30) | |
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| <Once per week | 18(14.5) | 18(12.8) | 0.84 |
| 1–6 per week | 71(57.2) | 85(60.7) | |
| >1 per day | 35(28.2) | 37(26.4) | |
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| No intake per day | 35(28.2) | 65(46.4) | 0.01 |
| 1–3 per day | 50(40.3) | 41(29.2) | |
| >3 per day | 39(31.4) | 34(24.2) | |
Mann - Whitney U was used to examine difference.
Chi square was used to examine differences.
Figure 1PCR based detection of HPV infection and GSTs polymorphism in oral cancer.
(A) Representative agarose gel stained with ethidium bromide for fragment size determination (at expected size of ∼450 base pairs) and polymerase chain reaction (PCR) amplification yield for common risk human papillomavirus (HPV) genomes from controls and oral cancer patients. (B) Bar graph showing the high incidence of HPV in OSCC patients than controls based on PCR detection of genomic DNA isolated from oral swab and tissues. (C) Multiplex PCR patterns for GSTM1, GSTT1, and CYP1A genes separated by agarose gel electrophoresis, corresponding to controls (lane 1–10) and oral cancer patients (lanes 11–20). The CYP1A1 gene was used as an internal positive control. Lanes 1,4,5,7,10,11,12,13,15,11 and 18 represents the presence of both GSTM1 and GSTT1 genes, and lane 2, 6 and 14 represents null genotypes for both GSTM1 and GSTT1 genes. Lanes 3 and 20 represent presence of GSTM1 gene and null genotypes for the GSTT1gene. Lanes 4, 58, 16 and 19 represent wild presence of GSTT1 gene and null genotypes for the GSTM1 gene. (D) Bar graph showing the distribution of GSTM1 and GSTT1 null genotypes among OSCC patients and controls based on multiplex PCR detection of genomic DNA isolated from oral swab and tissues.
Risk of tobacco and betelquid chewing, HPV and GSTT1- GSTM1 null genotypes associated with OSCC.
| Cases(n = 124) | Controls(n = 140) | OR[95%CI] |
| |
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| Chewers | 89 | 75 | 2.20 [1.31–3.68] | 0.002 |
| Nonchewers | 35 | 65 | 1(ref) | |
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| Presence | 54 | 24 | 3.72 [2.11–6.56] | <0.0001 |
| Absence | 70 | 116 | 1(ref) | |
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| + | 65 | 103 | 1(ref) | 0.0003 |
| Null | 59 | 37 | 2.52 [1.50–4.22] | |
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| + | 73 | 108 | 1(ref) | 0.001 |
| Null | 51 | 32 | 2.35 [1.38–4.01] | |
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| + | 50 | 77 | 1(ref) | <0.0001 |
| Null | 35 | 7 | 7.7 [3.17–18.67] | |
Figure 2Real time PCR based mitochondrial DNA copy number determination in oral cancer.
(A) Quantitative PCR of D-loop region and GAPDH gene (representative curve). D-loop region and GAPDH are ubiquitous genes found in the mitochondrial and nuclear genomes, respectively. Using quantitative PCR in samples from the patient and control, the relative mitochondrial content was calculated. (B) Distribution of mtDNA copy number in OSCC and controls. (C) Mitochondrial content decreases with increase in tumour stage: the various stages of OSCC samples from stage 0 to stage IVB with respect to log 2 RQ (log fold change).
ORs and 95% CI for mtDNA copy number and risk of oral cancer.
| mtDNA copy number quartile | Cases (n = 124) | Controls (n = 140) | OR (95%CI) |
| Quartile 1 (≤0.1) | 58 | 43 | 2.92[1.32–6.43] |
| Quartile 2 (>0.1–1) | 35 | 42 | 1.80[0.79–4.09] |
| Quartile 3 (>1–10) | 19 | 29 | 1.41[0.57–3.47] |
| Quartile 4 (>10) | 12 | 26 | 1 (ref) |
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mtDNA copy number and risk of oral cancer stratified by tobacco-betel quid chewing.
| mtDNA content | Tobacco- betel quid Chewers | Tobacco- betel quid Non-chewers |
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| Cases/Controls | OR (95%CI) | Cases/Controls | OR (95%CI) | ||
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| 69/46 | 3.54 [1.59–7.87] | 24/39 | 1.45 [0.60–3.46] | 0.0005 |
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| 20/29 | 1.63 [0.65–4.03] | 11/26 | 1(ref) | |