| Literature DB >> 23468806 |
P Selvarathy Grace1, Samuel Robinson Jebas, B Ravindran Durai Nayagam, Dieter Schollmeyer.
Abstract
In the title hydrate, C13H11N3O·H2O, the benzotriazole ring system is planar (r.m.s. deviation = 0.007 Å) and is almost orthogonal to the phenyl ring to which it is linked by a methyl-ene group, forming a dihedral angle of 81.87 (15)°. In the crystal, mol-ecules are linked into chains along [001] by O-H⋯O hydrogen bonds. The chains are consolidated into a three-dimensional architecture by C-H⋯O, C-H⋯π and π-π [centroid-centroid distance between the five- and six-membered rings of the benzotriazole ring system = 3.595 (3) Å] inter-actions.Entities:
Year: 2012 PMID: 23468806 PMCID: PMC3588841 DOI: 10.1107/S1600536812044868
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H11N3O·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 1403 reflections |
| θ = 2.5–20.2° | |
| µ = 0.09 mm−1 | |
| Needle, colourless | |
| 0.40 × 0.05 × 0.04 mm |
| Bruker SMART APEXII diffractometer | 1118 reflections with |
| Radiation source: sealed tube | |
| Graphite monochromator | θmax = 28.2°, θmin = 1.9° |
| CCD scan | |
| 15911 measured reflections | |
| 1677 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1677 reflections | Δρmax = 0.19 e Å−3 |
| 164 parameters | Δρmin = −0.24 e Å−3 |
| 1 restraint | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.038 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N1 | 0.3160 (2) | 0.27237 (12) | 0.6604 (7) | 0.0335 (7) | |
| N2 | 0.4106 (2) | 0.25008 (13) | 0.5616 (7) | 0.0372 (7) | |
| N3 | 0.4253 (2) | 0.19473 (13) | 0.6976 (8) | 0.0389 (8) | |
| C4 | 0.3429 (3) | 0.18041 (15) | 0.8807 (9) | 0.0343 (8) | |
| C5 | 0.3241 (3) | 0.12821 (16) | 1.0631 (10) | 0.0455 (10) | |
| H5 | 0.3720 | 0.0931 | 1.0769 | 0.055* | |
| C6 | 0.2315 (3) | 0.13125 (18) | 1.2207 (10) | 0.0524 (11) | |
| H6 | 0.2153 | 0.0974 | 1.3495 | 0.063* | |
| C7 | 0.1594 (3) | 0.18339 (18) | 1.1969 (10) | 0.0464 (9) | |
| H7 | 0.0962 | 0.1829 | 1.3089 | 0.056* | |
| C8 | 0.1776 (3) | 0.23429 (16) | 1.0183 (8) | 0.0380 (9) | |
| H8 | 0.1293 | 0.2692 | 1.0038 | 0.046* | |
| C9 | 0.2720 (3) | 0.23174 (14) | 0.8583 (8) | 0.0301 (8) | |
| C10 | 0.2800 (3) | 0.33671 (14) | 0.5809 (9) | 0.0344 (8) | |
| H10A | 0.2019 | 0.3360 | 0.5514 | 0.041* | |
| H10B | 0.3137 | 0.3492 | 0.3974 | 0.041* | |
| C11 | 0.3069 (3) | 0.38601 (15) | 0.8068 (8) | 0.0310 (8) | |
| C12 | 0.2259 (3) | 0.42481 (15) | 0.9188 (9) | 0.0364 (8) | |
| H12 | 0.1545 | 0.4193 | 0.8558 | 0.044* | |
| C13 | 0.2499 (3) | 0.47148 (15) | 1.1226 (9) | 0.0419 (9) | |
| H13 | 0.1948 | 0.4979 | 1.1972 | 0.050* | |
| C14 | 0.3532 (3) | 0.47944 (16) | 1.2161 (10) | 0.0423 (9) | |
| H14 | 0.3693 | 0.5115 | 1.3539 | 0.051* | |
| C15 | 0.4335 (3) | 0.44073 (16) | 1.1095 (9) | 0.0396 (9) | |
| H15 | 0.5044 | 0.4458 | 1.1767 | 0.048* | |
| C16 | 0.4107 (3) | 0.39448 (16) | 0.9047 (9) | 0.0377 (8) | |
| H16 | 0.4663 | 0.3684 | 0.8308 | 0.045* | |
| O17 | 0.51045 (19) | 0.16046 (12) | 0.6496 (9) | 0.0576 (10) | |
| O1W | 0.4934 (2) | 0.03436 (11) | 0.4506 (7) | 0.0472 (7) | |
| H1W | 0.4943 | 0.0098 | 0.5883 | 0.071* | |
| H2W | 0.4986 | 0.0728 | 0.5103 | 0.071* |
| N1 | 0.0399 (15) | 0.0262 (13) | 0.0344 (17) | 0.0007 (12) | −0.0016 (14) | 0.0040 (13) |
| N2 | 0.0383 (15) | 0.0306 (13) | 0.0426 (18) | 0.0002 (13) | 0.0004 (15) | −0.0061 (14) |
| N3 | 0.0389 (15) | 0.0276 (13) | 0.0503 (19) | 0.0033 (12) | −0.0076 (16) | −0.0087 (15) |
| C4 | 0.0400 (18) | 0.0240 (15) | 0.039 (2) | −0.0013 (14) | −0.0091 (18) | −0.0034 (16) |
| C5 | 0.063 (2) | 0.0263 (16) | 0.048 (2) | −0.0027 (17) | −0.021 (2) | 0.0027 (18) |
| C6 | 0.080 (3) | 0.034 (2) | 0.043 (2) | −0.017 (2) | −0.018 (3) | 0.0126 (19) |
| C7 | 0.056 (2) | 0.043 (2) | 0.039 (2) | −0.0120 (17) | −0.003 (2) | 0.008 (2) |
| C8 | 0.044 (2) | 0.0316 (18) | 0.038 (2) | −0.0022 (15) | −0.0036 (18) | 0.0001 (16) |
| C9 | 0.0396 (18) | 0.0241 (14) | 0.0268 (19) | −0.0015 (13) | −0.0043 (16) | 0.0025 (14) |
| C10 | 0.045 (2) | 0.0259 (15) | 0.0321 (19) | 0.0012 (14) | −0.0032 (17) | 0.0053 (15) |
| C11 | 0.0410 (18) | 0.0214 (14) | 0.0304 (18) | −0.0046 (14) | −0.0022 (16) | 0.0067 (14) |
| C12 | 0.0353 (17) | 0.0297 (15) | 0.044 (2) | 0.0020 (14) | −0.0066 (18) | 0.0010 (17) |
| C13 | 0.0461 (19) | 0.0287 (16) | 0.051 (3) | 0.0061 (15) | −0.005 (2) | −0.0025 (18) |
| C14 | 0.056 (2) | 0.0299 (16) | 0.041 (2) | −0.0108 (16) | −0.001 (2) | −0.0005 (18) |
| C15 | 0.0401 (19) | 0.0376 (17) | 0.041 (2) | −0.0109 (16) | −0.0017 (18) | 0.0010 (17) |
| C16 | 0.0376 (18) | 0.0372 (17) | 0.038 (2) | 0.0002 (15) | 0.0028 (17) | 0.0048 (17) |
| O17 | 0.0404 (14) | 0.0367 (13) | 0.096 (3) | 0.0084 (11) | −0.0063 (17) | −0.0224 (18) |
| O1W | 0.0745 (18) | 0.0287 (12) | 0.0382 (15) | −0.0030 (12) | −0.0035 (14) | −0.0018 (12) |
| N1—N2 | 1.356 (4) | C10—H10A | 0.9900 |
| N1—C9 | 1.370 (4) | C10—H10B | 0.9900 |
| N1—C10 | 1.465 (4) | C11—C16 | 1.393 (5) |
| N2—N3 | 1.331 (4) | C11—C12 | 1.401 (5) |
| N3—O17 | 1.306 (4) | C12—C13 | 1.394 (5) |
| N3—C4 | 1.374 (5) | C12—H12 | 0.9500 |
| C4—C9 | 1.398 (4) | C13—C14 | 1.379 (5) |
| C4—C5 | 1.403 (5) | C13—H13 | 0.9500 |
| C5—C6 | 1.377 (6) | C14—C15 | 1.385 (5) |
| C5—H5 | 0.9500 | C14—H14 | 0.9500 |
| C6—C7 | 1.421 (6) | C15—C16 | 1.389 (5) |
| C6—H6 | 0.9500 | C15—H15 | 0.9500 |
| C7—C8 | 1.370 (5) | C16—H16 | 0.9500 |
| C7—H7 | 0.9500 | O1W—H1W | 0.8225 |
| C8—C9 | 1.401 (5) | O1W—H2W | 0.8519 |
| C8—H8 | 0.9500 | ||
| N2—N1—C9 | 111.7 (3) | N1—C10—C11 | 112.3 (3) |
| N2—N1—C10 | 119.9 (3) | N1—C10—H10A | 109.1 |
| C9—N1—C10 | 127.8 (3) | C11—C10—H10A | 109.1 |
| N3—N2—N1 | 104.9 (3) | N1—C10—H10B | 109.1 |
| O17—N3—N2 | 120.5 (3) | C11—C10—H10B | 109.1 |
| O17—N3—C4 | 127.1 (3) | H10A—C10—H10B | 107.9 |
| N2—N3—C4 | 112.4 (3) | C16—C11—C12 | 118.9 (3) |
| N3—C4—C9 | 105.4 (3) | C16—C11—C10 | 121.6 (3) |
| N3—C4—C5 | 132.3 (3) | C12—C11—C10 | 119.5 (3) |
| C9—C4—C5 | 122.3 (3) | C13—C12—C11 | 120.1 (3) |
| C6—C5—C4 | 115.5 (3) | C13—C12—H12 | 119.9 |
| C6—C5—H5 | 122.3 | C11—C12—H12 | 119.9 |
| C4—C5—H5 | 122.3 | C14—C13—C12 | 120.2 (3) |
| C5—C6—C7 | 122.1 (4) | C14—C13—H13 | 119.9 |
| C5—C6—H6 | 118.9 | C12—C13—H13 | 119.9 |
| C7—C6—H6 | 118.9 | C13—C14—C15 | 120.1 (4) |
| C8—C7—C6 | 122.4 (4) | C13—C14—H14 | 120.0 |
| C8—C7—H7 | 118.8 | C15—C14—H14 | 120.0 |
| C6—C7—H7 | 118.8 | C14—C15—C16 | 120.2 (3) |
| C7—C8—C9 | 115.9 (3) | C14—C15—H15 | 119.9 |
| C7—C8—H8 | 122.1 | C16—C15—H15 | 119.9 |
| C9—C8—H8 | 122.1 | C15—C16—C11 | 120.5 (3) |
| N1—C9—C4 | 105.5 (3) | C15—C16—H16 | 119.8 |
| N1—C9—C8 | 132.6 (3) | C11—C16—H16 | 119.8 |
| C4—C9—C8 | 121.9 (3) | H1W—O1W—H2W | 109.4 |
| C9—N1—N2—N3 | 0.5 (4) | C5—C4—C9—N1 | −179.4 (3) |
| C10—N1—N2—N3 | 172.9 (3) | N3—C4—C9—C8 | −179.3 (3) |
| N1—N2—N3—O17 | 179.9 (3) | C5—C4—C9—C8 | 0.3 (5) |
| N1—N2—N3—C4 | 0.2 (4) | C7—C8—C9—N1 | 179.4 (4) |
| O17—N3—C4—C9 | 179.6 (3) | C7—C8—C9—C4 | −0.1 (5) |
| N2—N3—C4—C9 | −0.8 (4) | N2—N1—C10—C11 | −96.1 (4) |
| O17—N3—C4—C5 | 0.0 (7) | C9—N1—C10—C11 | 74.9 (4) |
| N2—N3—C4—C5 | 179.6 (4) | N1—C10—C11—C16 | 54.8 (4) |
| N3—C4—C5—C6 | 178.9 (4) | N1—C10—C11—C12 | −126.0 (3) |
| C9—C4—C5—C6 | −0.6 (5) | C16—C11—C12—C13 | 0.7 (5) |
| C4—C5—C6—C7 | 0.8 (6) | C10—C11—C12—C13 | −178.6 (3) |
| C5—C6—C7—C8 | −0.7 (6) | C11—C12—C13—C14 | −0.4 (6) |
| C6—C7—C8—C9 | 0.3 (6) | C12—C13—C14—C15 | −0.5 (6) |
| N2—N1—C9—C4 | −1.0 (4) | C13—C14—C15—C16 | 1.0 (6) |
| C10—N1—C9—C4 | −172.6 (3) | C14—C15—C16—C11 | −0.7 (6) |
| N2—N1—C9—C8 | 179.5 (4) | C12—C11—C16—C15 | −0.1 (5) |
| C10—N1—C9—C8 | 7.8 (6) | C10—C11—C16—C15 | 179.1 (3) |
| N3—C4—C9—N1 | 1.0 (4) |
| H··· | ||||
| O1 | 0.82 | 1.93 | 2.744 (3) | 169 |
| O1 | 0.85 | 1.95 | 2.800 (3) | 180 |
| C10—H10 | 0.99 | 2.45 | 3.400 (5) | 161 |
| C10—H10 | 0.99 | 2.51 | 3.382 (4) | 147 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C11–C16 phenyl ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.82 | 1.93 | 2.744 (3) | 169 |
| O1 | 0.85 | 1.95 | 2.800 (3) | 180 |
| C10—H10 | 0.99 | 2.45 | 3.400 (5) | 161 |
| C10—H10 | 0.99 | 2.51 | 3.382 (4) | 147 |
Symmetry codes: (i) ; (ii) ; (iii) .