Literature DB >> 23468800

(2RS,5'RS)-3',4'-Bis(4-chloro-phen-yl)-3,4-dihydro-spiro-[acridine-2,5'(4'H)-[1,2]oxazol]-1(2H)-one.

Ponmudisettu Narayanan1, Shanmugavel Uma Maheswari, Krishnan Sethusankar.   

Abstract

The title compound, C27H18Cl2N2O2, represents a racemic mixture of the corresponding R,R and S,S diastereomers. The isoxazoline ring adopts an envelope conformation with the spiro C atom deviating by 0.093 (2) Å from the rest of the ring. The six-membered keto-substituted carbocycle has a sofa conformation with the methyl-ene C atom adjacent to the spiro center deviating by 0.289 (2) Å from the mean plane of the remaining atoms. In the crystal, mol-ecules are linked via C-H⋯Cl inter-actions and C-Cl⋯O halogen bonds [2.958 (2) Å, 171.39 (7)°], which generate bifurcated R2(1)(6) ring motifs resulting in C2(1)[R2(1)(6)] chains running parallel to [010].

Entities:  

Year:  2012        PMID: 23468800      PMCID: PMC3588835          DOI: 10.1107/S1600536812045084

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the uses and biological importance of acridines, see: Asthana et al. (1991 ▶); Di Giorgio et al. (2005 ▶); Talacki et al. (1974 ▶). For related structures, see: Sridharan et al. (2009 ▶); Trzybiński et al. (2010 ▶). For graph-set notation, see: Bernstein et al.(1995 ▶)

Experimental

Crystal data

C27H18Cl2N2O2 M = 473.33 Monoclinic, a = 7.6493 (4) Å b = 15.1553 (7) Å c = 19.4802 (8) Å β = 90.392 (1)° V = 2258.24 (18) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 293 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.895, T max = 0.924 26147 measured reflections 5960 independent reflections 4189 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.143 S = 1.02 5960 reflections 298 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.66 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812045084/ld2076sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045084/ld2076Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H18Cl2N2O2F(000) = 976
Mr = 473.33Dx = 1.392 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5960 reflections
a = 7.6493 (4) Åθ = 2.5–29.1°
b = 15.1553 (7) ŵ = 0.32 mm1
c = 19.4802 (8) ÅT = 293 K
β = 90.392 (1)°Block, colourless
V = 2258.24 (18) Å30.35 × 0.30 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer5960 independent reflections
Radiation source: fine-focus sealed tube4189 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
ω and φ scansθmax = 29.1°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→8
Tmin = 0.895, Tmax = 0.924k = −19→20
26147 measured reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.055P)2 + 1.1784P] where P = (Fo2 + 2Fc2)/3
5960 reflections(Δ/σ)max < 0.001
298 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.66 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0838 (3)0.35507 (15)0.51570 (10)0.0529 (5)
C20.0846 (4)0.30775 (17)0.57843 (12)0.0673 (7)
H20.18720.30310.60410.081*
C3−0.0648 (4)0.26917 (18)0.60111 (13)0.0744 (8)
H3−0.06240.23710.64180.089*
C4−0.2209 (4)0.27669 (17)0.56474 (14)0.0713 (8)
H4−0.32140.24980.58140.086*
C5−0.2280 (4)0.32318 (16)0.50486 (13)0.0645 (6)
H5−0.33320.32830.48090.077*
C6−0.0756 (3)0.36356 (14)0.47927 (11)0.0514 (5)
C7−0.0714 (3)0.41213 (14)0.41763 (11)0.0487 (5)
H7−0.17390.42150.39280.058*
C80.0829 (3)0.44546 (13)0.39442 (9)0.0412 (4)
C90.2379 (3)0.43039 (14)0.43295 (9)0.0447 (5)
C100.4114 (3)0.45889 (15)0.40672 (10)0.0500 (5)
H10A0.47160.40770.38860.060*
H10B0.48040.48120.44490.060*
C110.4037 (3)0.52926 (14)0.35131 (10)0.0467 (5)
H11A0.37750.58570.37230.056*
H11B0.51730.53390.32980.056*
C120.2668 (2)0.50947 (12)0.29669 (9)0.0370 (4)
C130.0870 (3)0.49484 (13)0.32843 (9)0.0403 (4)
C140.2591 (2)0.57197 (12)0.23452 (9)0.0368 (4)
H140.15170.60720.23580.044*
C150.2486 (2)0.50547 (12)0.17730 (9)0.0387 (4)
C160.2293 (3)0.52867 (13)0.10425 (10)0.0438 (4)
C170.2685 (4)0.46792 (16)0.05371 (11)0.0595 (6)
H170.30500.41160.06620.071*
C180.2543 (4)0.48944 (18)−0.01475 (11)0.0668 (7)
H180.28030.4480−0.04840.080*
C190.2013 (3)0.57288 (18)−0.03267 (11)0.0604 (6)
C200.1643 (3)0.63492 (18)0.01599 (12)0.0635 (6)
H200.13020.69140.00300.076*
C210.1782 (3)0.61285 (16)0.08492 (11)0.0545 (5)
H210.15300.65470.11830.065*
C220.4159 (2)0.63149 (12)0.22639 (9)0.0380 (4)
C230.4050 (3)0.72015 (13)0.24167 (10)0.0449 (4)
H230.29850.74420.25480.054*
C240.5513 (3)0.77360 (14)0.23758 (11)0.0528 (5)
H240.54400.83340.24790.063*
C250.7065 (3)0.73722 (16)0.21810 (11)0.0532 (6)
C260.7203 (3)0.64889 (16)0.20123 (12)0.0561 (6)
H260.82660.62530.18740.067*
C270.5743 (3)0.59690 (14)0.20536 (11)0.0488 (5)
H270.58170.53750.19390.059*
N10.2385 (3)0.38799 (13)0.49232 (8)0.0536 (5)
N20.2748 (2)0.42569 (11)0.19573 (8)0.0430 (4)
O1−0.0456 (2)0.51723 (12)0.29909 (8)0.0617 (4)
O20.30472 (18)0.42271 (8)0.26726 (6)0.0424 (3)
Cl10.18361 (12)0.59980 (6)−0.11902 (3)0.0901 (3)
Cl20.89238 (10)0.80315 (5)0.21560 (4)0.0828 (3)
U11U22U33U12U13U23
C10.0719 (15)0.0483 (12)0.0386 (10)0.0143 (10)0.0080 (10)0.0029 (8)
C20.091 (2)0.0665 (16)0.0440 (11)0.0183 (14)0.0048 (12)0.0111 (11)
C30.109 (2)0.0636 (16)0.0510 (13)0.0186 (15)0.0246 (15)0.0167 (11)
C40.090 (2)0.0566 (15)0.0682 (16)0.0104 (14)0.0296 (15)0.0166 (12)
C50.0696 (16)0.0603 (15)0.0638 (14)0.0094 (12)0.0178 (12)0.0145 (11)
C60.0639 (14)0.0440 (11)0.0464 (10)0.0117 (10)0.0131 (10)0.0054 (9)
C70.0501 (12)0.0489 (12)0.0471 (10)0.0093 (9)0.0046 (9)0.0078 (9)
C80.0470 (11)0.0410 (10)0.0355 (8)0.0083 (8)0.0027 (8)0.0008 (7)
C90.0520 (12)0.0475 (11)0.0345 (9)0.0096 (9)−0.0014 (8)−0.0033 (8)
C100.0476 (12)0.0667 (14)0.0355 (9)0.0069 (10)−0.0093 (8)−0.0007 (9)
C110.0443 (11)0.0532 (12)0.0424 (10)−0.0016 (9)−0.0057 (8)−0.0032 (9)
C120.0387 (10)0.0352 (9)0.0369 (8)0.0038 (7)−0.0024 (7)−0.0002 (7)
C130.0415 (11)0.0414 (10)0.0381 (9)0.0043 (8)−0.0010 (8)0.0022 (7)
C140.0356 (10)0.0346 (9)0.0400 (9)0.0017 (7)−0.0016 (7)0.0009 (7)
C150.0395 (10)0.0386 (10)0.0379 (9)−0.0043 (8)−0.0016 (7)0.0009 (7)
C160.0460 (11)0.0468 (11)0.0385 (9)−0.0093 (9)−0.0029 (8)0.0045 (8)
C170.0833 (18)0.0516 (13)0.0435 (11)−0.0079 (12)−0.0013 (11)0.0003 (9)
C180.0899 (19)0.0700 (16)0.0403 (11)−0.0166 (14)0.0019 (11)−0.0052 (10)
C190.0641 (15)0.0789 (17)0.0382 (10)−0.0215 (13)−0.0078 (10)0.0109 (10)
C200.0731 (16)0.0661 (15)0.0511 (12)−0.0023 (13)−0.0066 (11)0.0175 (11)
C210.0635 (14)0.0571 (13)0.0430 (10)0.0016 (11)−0.0023 (10)0.0060 (9)
C220.0409 (10)0.0351 (9)0.0380 (9)−0.0011 (8)−0.0025 (7)0.0016 (7)
C230.0503 (12)0.0382 (10)0.0462 (10)0.0016 (8)−0.0012 (9)0.0003 (8)
C240.0674 (15)0.0393 (11)0.0515 (11)−0.0114 (10)−0.0097 (10)0.0036 (9)
C250.0511 (13)0.0591 (14)0.0491 (11)−0.0207 (10)−0.0135 (9)0.0163 (10)
C260.0395 (12)0.0659 (15)0.0629 (13)−0.0025 (10)0.0002 (10)0.0089 (11)
C270.0432 (11)0.0414 (11)0.0617 (12)0.0006 (9)0.0020 (9)−0.0020 (9)
N10.0654 (12)0.0597 (11)0.0358 (8)0.0118 (9)−0.0019 (8)0.0041 (8)
N20.0510 (10)0.0412 (9)0.0368 (8)−0.0002 (7)−0.0032 (7)−0.0015 (6)
O10.0410 (9)0.0822 (12)0.0620 (9)0.0053 (8)−0.0031 (7)0.0296 (8)
O20.0531 (8)0.0377 (7)0.0365 (6)0.0092 (6)−0.0028 (6)0.0010 (5)
Cl10.1173 (7)0.1131 (6)0.0398 (3)−0.0268 (5)−0.0110 (3)0.0189 (3)
Cl20.0693 (4)0.0932 (5)0.0855 (5)−0.0443 (4)−0.0209 (4)0.0288 (4)
C1—N11.365 (3)C14—C151.504 (2)
C1—C61.413 (3)C14—C221.510 (3)
C1—C21.417 (3)C14—H140.9800
C2—C31.360 (4)C15—N21.277 (2)
C2—H20.9300C15—C161.472 (3)
C3—C41.389 (4)C16—C171.382 (3)
C3—H30.9300C16—C211.386 (3)
C4—C51.363 (3)C17—C181.376 (3)
C4—H40.9300C17—H170.9300
C5—C61.411 (3)C18—C191.372 (4)
C5—H50.9300C18—H180.9300
C6—C71.409 (3)C19—C201.366 (4)
C7—C81.364 (3)C19—Cl11.735 (2)
C7—H70.9300C20—C211.387 (3)
C8—C91.417 (3)C20—H200.9300
C8—C131.488 (3)C21—H210.9300
C9—N11.323 (2)C22—C231.379 (3)
C9—C101.490 (3)C22—C271.385 (3)
C10—C111.518 (3)C23—C241.384 (3)
C10—H10A0.9700C23—H230.9300
C10—H10B0.9700C24—C251.365 (3)
C11—C121.518 (3)C24—H240.9300
C11—H11A0.9700C25—C261.383 (3)
C11—H11B0.9700C25—Cl21.739 (2)
C12—O21.464 (2)C26—C271.370 (3)
C12—C131.528 (3)C26—H260.9300
C12—C141.538 (2)C27—H270.9300
C13—O11.209 (2)N2—O21.4111 (19)
N1—C1—C6123.12 (18)C15—C14—C22111.14 (15)
N1—C1—C2118.3 (2)C15—C14—C1299.93 (14)
C6—C1—C2118.5 (2)C22—C14—C12115.11 (15)
C3—C2—C1119.9 (3)C15—C14—H14110.1
C3—C2—H2120.0C22—C14—H14110.1
C1—C2—H2120.0C12—C14—H14110.1
C2—C3—C4121.4 (2)N2—C15—C16120.84 (17)
C2—C3—H3119.3N2—C15—C14114.74 (16)
C4—C3—H3119.3C16—C15—C14124.10 (16)
C5—C4—C3120.5 (3)C17—C16—C21118.80 (19)
C5—C4—H4119.7C17—C16—C15120.57 (19)
C3—C4—H4119.7C21—C16—C15120.58 (19)
C4—C5—C6119.9 (3)C18—C17—C16121.1 (2)
C4—C5—H5120.1C18—C17—H17119.5
C6—C5—H5120.1C16—C17—H17119.5
C7—C6—C5123.5 (2)C19—C18—C17119.1 (2)
C7—C6—C1116.8 (2)C19—C18—H18120.5
C5—C6—C1119.7 (2)C17—C18—H18120.5
C8—C7—C6120.1 (2)C20—C19—C18121.3 (2)
C8—C7—H7120.0C20—C19—Cl1119.7 (2)
C6—C7—H7120.0C18—C19—Cl1118.9 (2)
C7—C8—C9119.17 (18)C19—C20—C21119.4 (2)
C7—C8—C13119.74 (18)C19—C20—H20120.3
C9—C8—C13121.07 (18)C21—C20—H20120.3
N1—C9—C8122.6 (2)C16—C21—C20120.3 (2)
N1—C9—C10116.29 (18)C16—C21—H21119.9
C8—C9—C10121.05 (17)C20—C21—H21119.9
C9—C10—C11114.63 (17)C23—C22—C27119.15 (19)
C9—C10—H10A108.6C23—C22—C14120.67 (18)
C11—C10—H10A108.6C27—C22—C14120.15 (17)
C9—C10—H10B108.6C22—C23—C24120.5 (2)
C11—C10—H10B108.6C22—C23—H23119.8
H10A—C10—H10B107.6C24—C23—H23119.8
C12—C11—C10112.53 (17)C25—C24—C23119.0 (2)
C12—C11—H11A109.1C25—C24—H24120.5
C10—C11—H11A109.1C23—C24—H24120.5
C12—C11—H11B109.1C24—C25—C26121.7 (2)
C10—C11—H11B109.1C24—C25—Cl2119.25 (19)
H11A—C11—H11B107.8C26—C25—Cl2119.06 (19)
O2—C12—C11108.33 (15)C27—C26—C25118.6 (2)
O2—C12—C13102.09 (14)C27—C26—H26120.7
C11—C12—C13111.31 (15)C25—C26—H26120.7
O2—C12—C14104.56 (13)C26—C27—C22121.0 (2)
C11—C12—C14116.92 (16)C26—C27—H27119.5
C13—C12—C14112.23 (15)C22—C27—H27119.5
O1—C13—C8121.80 (18)C9—N1—C1118.12 (19)
O1—C13—C12121.48 (17)C15—N2—O2109.40 (15)
C8—C13—C12116.55 (16)N2—O2—C12109.06 (12)
N1—C1—C2—C3−175.8 (2)C12—C14—C15—N2−9.7 (2)
C6—C1—C2—C32.2 (3)C22—C14—C15—C16−61.2 (2)
C1—C2—C3—C4−1.5 (4)C12—C14—C15—C16176.79 (18)
C2—C3—C4—C50.1 (4)N2—C15—C16—C17−11.1 (3)
C3—C4—C5—C60.4 (4)C14—C15—C16—C17162.0 (2)
C4—C5—C6—C7179.5 (2)N2—C15—C16—C21171.5 (2)
C4—C5—C6—C10.4 (4)C14—C15—C16—C21−15.4 (3)
N1—C1—C6—C7−2.9 (3)C21—C16—C17—C18−1.2 (4)
C2—C1—C6—C7179.1 (2)C15—C16—C17—C18−178.6 (2)
N1—C1—C6—C5176.2 (2)C16—C17—C18—C190.4 (4)
C2—C1—C6—C5−1.7 (3)C17—C18—C19—C200.7 (4)
C5—C6—C7—C8−176.7 (2)C17—C18—C19—Cl1180.0 (2)
C1—C6—C7—C82.5 (3)C18—C19—C20—C21−0.9 (4)
C6—C7—C8—C90.1 (3)Cl1—C19—C20—C21179.79 (19)
C6—C7—C8—C13178.54 (18)C17—C16—C21—C200.9 (3)
C7—C8—C9—N1−2.7 (3)C15—C16—C21—C20178.4 (2)
C13—C8—C9—N1178.90 (18)C19—C20—C21—C160.1 (4)
C7—C8—C9—C10174.79 (19)C15—C14—C22—C23141.26 (18)
C13—C8—C9—C10−3.6 (3)C12—C14—C22—C23−106.1 (2)
N1—C9—C10—C11−162.66 (18)C15—C14—C22—C27−40.7 (2)
C8—C9—C10—C1119.7 (3)C12—C14—C22—C2772.0 (2)
C9—C10—C11—C12−45.5 (2)C27—C22—C23—C24−1.4 (3)
C10—C11—C12—O2−56.8 (2)C14—C22—C23—C24176.62 (18)
C10—C11—C12—C1354.6 (2)C22—C23—C24—C250.1 (3)
C10—C11—C12—C14−174.55 (16)C23—C24—C25—C261.2 (3)
C7—C8—C13—O110.5 (3)C23—C24—C25—Cl2−177.88 (16)
C9—C8—C13—O1−171.1 (2)C24—C25—C26—C27−1.0 (3)
C7—C8—C13—C12−164.82 (18)Cl2—C25—C26—C27178.05 (17)
C9—C8—C13—C1213.6 (3)C25—C26—C27—C22−0.4 (3)
O2—C12—C13—O1−98.6 (2)C23—C22—C27—C261.6 (3)
C11—C12—C13—O1146.0 (2)C14—C22—C27—C26−176.45 (19)
C14—C12—C13—O112.8 (3)C8—C9—N1—C12.3 (3)
O2—C12—C13—C876.68 (18)C10—C9—N1—C1−175.28 (19)
C11—C12—C13—C8−38.7 (2)C6—C1—N1—C90.6 (3)
C14—C12—C13—C8−171.91 (16)C2—C1—N1—C9178.5 (2)
O2—C12—C14—C1513.95 (17)C16—C15—N2—O2174.59 (16)
C11—C12—C14—C15133.71 (17)C14—C15—N2—O20.9 (2)
C13—C12—C14—C15−95.92 (17)C15—N2—O2—C129.2 (2)
O2—C12—C14—C22−105.16 (17)C11—C12—O2—N2−140.22 (15)
C11—C12—C14—C2214.6 (2)C13—C12—O2—N2102.23 (15)
C13—C12—C14—C22144.98 (16)C14—C12—O2—N2−14.85 (18)
C22—C14—C15—N2112.27 (19)
D—H···AD—HH···AD···AD—H···A
C10—H10A···Cl2i0.972.783.681 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10A⋯Cl2i 0.972.783.681 (2)154

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antileishmanial activities of 4,5-di-substituted acridines as compared to their 4-mono-substituted homologues.

Authors:  Di Giorgio Carole; De Méo Michel; Chiron Julien; Delmas Florence; Nikoyan Anna; Jean Séverine; Dumenil Gérard; Timon-David Pierre; Galy Jean-Pierre
Journal:  Bioorg Med Chem       Date:  2005-10-01       Impact factor: 3.641

3.  2-Meth-oxy-9-phenoxy-acridine.

Authors:  Damian Trzybiński; Beata Zadykowicz; Karol Krzymiński; Artur Sikorski; Jerzy Błażejowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

4.  9-Chloro-1-methyl-7-phenyl-5,6-dihydro-13H-indolo[3,2-c]acridine.

Authors:  Makuteswaran Sridharan; Karnam J Rajendra Prasad; Matthias Zeller
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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