Literature DB >> 21580657

2-Meth-oxy-9-phenoxy-acridine.

Damian Trzybiński1, Beata Zadykowicz, Karol Krzymiński, Artur Sikorski, Jerzy Błażejowski.   

Abstract

The mol-ecules in the crystal structure of the title compound, C(20)H(15)NO(2), form inversion dimers connected through the C-H⋯N and π-π inter-actions. These dimers are further linked by C-H⋯π inter-actions. The meth-oxy group is nearly coplanar with the acridine ring system [dihedral angle = 4.5 (1)°], whereas the phen-oxy fragment is nearly perpendicular to it [dihedral angle = 85.0 (1)°]. The mean planes of the acridine ring systems are either parallel or inclined at angles of 14.3 (1), 65.4 (1) and 67.3 (1)° in the crystal.

Entities:  

Year:  2010        PMID: 21580657      PMCID: PMC2984048          DOI: 10.1107/S1600536810008962

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 9-phenoxy­acridines, see: Acheson (1973 ▶); Albert (1966 ▶); Chen et al. (2002 ▶); Demeunynck et al. (2001 ▶); Lebekhov & Samarin (1969 ▶); Ueyama et al. (2002 ▶). For related structures, see: Ebead et al. (2005 ▶); Sikorski et al. (2007 ▶). For inter­molecular inter­actions, see: Hunter et al. (2001 ▶); Mazik et al. (2000 ▶); Takahashi et al. (2001 ▶). For the synthesis, see: Acheson (1973 ▶); Chen et al. (2002 ▶); Duprè & Robinson (1945 ▶).

Experimental

Crystal data

C20H15NO2 M = 301.33 Orthorhombic, a = 8.3042 (2) Å b = 15.5101 (4) Å c = 24.0192 (6) Å V = 3093.65 (13) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.50 × 0.25 × 0.10 mm

Data collection

Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.890, T max = 0.994 56825 measured reflections 2747 independent reflections 2322 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.086 S = 1.10 2747 reflections 210 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.11 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810008962/ng2741sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008962/ng2741Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H15NO2F(000) = 1264
Mr = 301.33Dx = 1.294 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 32561 reflections
a = 8.3042 (2) Åθ = 3.0–29.3°
b = 15.5101 (4) ŵ = 0.08 mm1
c = 24.0192 (6) ÅT = 295 K
V = 3093.65 (13) Å3Plate, light-brown
Z = 80.50 × 0.25 × 0.10 mm
Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer2747 independent reflections
Radiation source: Enhance (Mo) X-ray Source2322 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 10.4002 pixels mm-1θmax = 25.1°, θmin = 3.0°
ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −18→18
Tmin = 0.890, Tmax = 0.994l = −28→28
56825 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.048P)2 + 0.2828P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
2747 reflectionsΔρmax = 0.15 e Å3
210 parametersΔρmin = −0.11 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0046 (6)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.18244 (13)0.00760 (7)0.34444 (4)0.0442 (3)
H10.13620.03640.31450.053*
C20.26680 (14)−0.06681 (7)0.33602 (5)0.0498 (3)
C30.33776 (16)−0.11161 (8)0.38157 (5)0.0560 (3)
H30.3938−0.16260.37510.067*
C40.32483 (15)−0.08118 (8)0.43386 (5)0.0525 (3)
H40.3731−0.11120.46290.063*
C50.13635 (15)0.12529 (8)0.56536 (5)0.0522 (3)
H50.18830.09460.59340.063*
C60.05228 (16)0.19741 (9)0.57843 (5)0.0591 (3)
H60.04710.21550.61530.071*
C7−0.02759 (15)0.24540 (8)0.53666 (5)0.0573 (3)
H7−0.08540.29450.54640.069*
C8−0.02090 (13)0.22067 (7)0.48256 (5)0.0478 (3)
H8−0.07370.25300.45550.057*
C90.08142 (12)0.11619 (6)0.41230 (4)0.0383 (2)
N100.23001 (11)0.02343 (6)0.49857 (4)0.0460 (2)
C110.16565 (11)0.04083 (6)0.39947 (4)0.0389 (2)
C120.23839 (12)−0.00369 (7)0.44563 (4)0.0416 (3)
C130.06662 (12)0.14545 (7)0.46691 (4)0.0397 (3)
C140.14617 (12)0.09591 (7)0.50938 (4)0.0421 (3)
O150.29423 (13)−0.10503 (6)0.28557 (3)0.0676 (3)
C160.2364 (2)−0.06180 (10)0.23706 (5)0.0749 (4)
H16A0.2695−0.09290.20450.112*
H16B0.2799−0.00450.23580.112*
H16C0.1210−0.05890.23820.112*
O170.02052 (8)0.16615 (5)0.36901 (3)0.0441 (2)
C18−0.13908 (11)0.15439 (6)0.35297 (4)0.0352 (2)
C19−0.24472 (13)0.10027 (6)0.38029 (4)0.0410 (3)
H19−0.21230.06970.41170.049*
C20−0.40022 (14)0.09241 (8)0.35996 (5)0.0508 (3)
H20−0.47270.05610.37790.061*
C21−0.44883 (14)0.13772 (9)0.31347 (5)0.0572 (3)
H21−0.55300.13140.29980.069*
C22−0.34193 (15)0.19255 (9)0.28733 (5)0.0552 (3)
H22−0.37450.22350.25610.066*
C23−0.18710 (13)0.20176 (7)0.30720 (4)0.0441 (3)
H23−0.11580.23950.29000.053*
U11U22U33U12U13U23
C10.0460 (6)0.0434 (6)0.0434 (6)−0.0019 (5)−0.0025 (5)0.0079 (5)
C20.0564 (7)0.0440 (6)0.0489 (7)−0.0009 (5)0.0051 (5)0.0015 (5)
C30.0648 (8)0.0420 (6)0.0612 (8)0.0114 (5)0.0039 (6)0.0071 (5)
C40.0579 (7)0.0453 (6)0.0544 (7)0.0097 (5)−0.0032 (5)0.0141 (5)
C50.0596 (7)0.0521 (7)0.0450 (6)−0.0066 (6)−0.0065 (5)0.0042 (5)
C60.0686 (8)0.0579 (8)0.0508 (7)−0.0073 (6)0.0007 (6)−0.0078 (6)
C70.0558 (7)0.0500 (7)0.0661 (8)0.0012 (6)0.0028 (6)−0.0079 (6)
C80.0427 (6)0.0436 (6)0.0570 (7)−0.0004 (5)−0.0019 (5)0.0039 (5)
C90.0339 (5)0.0377 (5)0.0432 (6)−0.0040 (4)−0.0049 (4)0.0119 (4)
N100.0487 (5)0.0440 (5)0.0452 (5)0.0003 (4)−0.0051 (4)0.0099 (4)
C110.0354 (5)0.0374 (5)0.0438 (6)−0.0039 (4)−0.0014 (4)0.0091 (4)
C120.0405 (5)0.0401 (6)0.0442 (6)−0.0017 (4)−0.0021 (4)0.0095 (5)
C130.0343 (5)0.0380 (6)0.0469 (6)−0.0058 (4)−0.0019 (4)0.0067 (4)
C140.0414 (6)0.0407 (6)0.0443 (6)−0.0071 (4)−0.0030 (4)0.0068 (5)
O150.0937 (7)0.0575 (5)0.0515 (5)0.0130 (5)0.0051 (5)−0.0031 (4)
C160.1016 (11)0.0740 (9)0.0492 (8)0.0065 (8)−0.0016 (7)−0.0043 (7)
O170.0378 (4)0.0443 (4)0.0502 (4)−0.0016 (3)−0.0052 (3)0.0173 (3)
C180.0366 (5)0.0341 (5)0.0349 (5)0.0029 (4)−0.0004 (4)−0.0010 (4)
C190.0472 (6)0.0367 (5)0.0393 (5)−0.0018 (4)−0.0032 (4)0.0043 (4)
C200.0470 (6)0.0497 (7)0.0556 (7)−0.0106 (5)−0.0013 (5)0.0020 (5)
C210.0472 (7)0.0685 (8)0.0560 (7)−0.0050 (6)−0.0155 (5)0.0019 (6)
C220.0540 (7)0.0698 (8)0.0418 (6)0.0042 (6)−0.0099 (5)0.0111 (6)
C230.0452 (6)0.0500 (6)0.0369 (5)0.0033 (5)0.0037 (4)0.0086 (5)
C1—C21.3651 (16)N10—C121.3413 (14)
C1—C111.4256 (15)N10—C141.3476 (14)
C1—H10.9300C11—C121.4391 (14)
C2—O151.3681 (14)C13—C141.4378 (14)
C2—C31.4237 (17)O15—C161.4276 (16)
C3—C41.3460 (17)C16—H16A0.9600
C3—H30.9300C16—H16B0.9600
C4—C121.4282 (16)C16—H16C0.9600
C4—H40.9300O17—C181.3922 (12)
C5—C61.3554 (19)C18—C191.3801 (14)
C5—C141.4220 (16)C18—C231.3812 (14)
C5—H50.9300C19—C201.3859 (15)
C6—C71.4144 (18)C19—H190.9300
C6—H60.9300C20—C211.3797 (17)
C7—C81.3560 (16)C20—H200.9300
C7—H70.9300C21—C221.3805 (18)
C8—C131.4250 (16)C21—H210.9300
C8—H80.9300C22—C231.3788 (16)
C9—O171.3920 (12)C22—H220.9300
C9—C131.3934 (14)C23—H230.9300
C9—C111.3965 (15)
C2—C1—C11119.54 (10)C4—C12—C11117.54 (10)
C2—C1—H1120.2C9—C13—C8124.06 (9)
C11—C1—H1120.2C9—C13—C14116.95 (9)
C1—C2—O15125.66 (10)C8—C13—C14118.99 (10)
C1—C2—C3120.75 (11)N10—C14—C5118.62 (10)
O15—C2—C3113.59 (10)N10—C14—C13123.13 (10)
C4—C3—C2120.85 (11)C5—C14—C13118.25 (10)
C4—C3—H3119.6C2—O15—C16117.61 (10)
C2—C3—H3119.6O15—C16—H16A109.5
C3—C4—C12121.32 (10)O15—C16—H16B109.5
C3—C4—H4119.3H16A—C16—H16B109.5
C12—C4—H4119.3O15—C16—H16C109.5
C6—C5—C14120.86 (11)H16A—C16—H16C109.5
C6—C5—H5119.6H16B—C16—H16C109.5
C14—C5—H5119.6C9—O17—C18118.66 (7)
C5—C6—C7120.77 (11)C19—C18—C23121.24 (9)
C5—C6—H6119.6C19—C18—O17123.59 (9)
C7—C6—H6119.6C23—C18—O17115.17 (9)
C8—C7—C6120.77 (12)C18—C19—C20118.57 (10)
C8—C7—H7119.6C18—C19—H19120.7
C6—C7—H7119.6C20—C19—H19120.7
C7—C8—C13120.35 (11)C21—C20—C19120.86 (11)
C7—C8—H8119.8C21—C20—H20119.6
C13—C8—H8119.8C19—C20—H20119.6
O17—C9—C13119.33 (9)C20—C21—C22119.58 (11)
O17—C9—C11118.88 (9)C20—C21—H21120.2
C13—C9—C11121.64 (9)C22—C21—H21120.2
C12—N10—C14118.10 (9)C23—C22—C21120.40 (10)
C9—C11—C1123.79 (9)C23—C22—H22119.8
C9—C11—C12116.22 (9)C21—C22—H22119.8
C1—C11—C12119.99 (9)C22—C23—C18119.31 (10)
N10—C12—C4118.53 (9)C22—C23—H23120.3
N10—C12—C11123.94 (10)C18—C23—H23120.3
C11—C1—C2—O15−178.96 (10)C11—C9—C13—C141.82 (14)
C11—C1—C2—C30.15 (17)C7—C8—C13—C9−179.10 (10)
C1—C2—C3—C4−0.73 (19)C7—C8—C13—C140.59 (16)
O15—C2—C3—C4178.49 (11)C12—N10—C14—C5179.97 (9)
C2—C3—C4—C120.68 (19)C12—N10—C14—C13−0.39 (15)
C14—C5—C6—C7−0.13 (19)C6—C5—C14—N10−179.41 (11)
C5—C6—C7—C8−0.47 (19)C6—C5—C14—C130.93 (17)
C6—C7—C8—C130.22 (18)C9—C13—C14—N10−1.08 (14)
O17—C9—C11—C1−5.34 (14)C8—C13—C14—N10179.21 (9)
C13—C9—C11—C1179.14 (9)C9—C13—C14—C5178.57 (9)
O17—C9—C11—C12174.41 (8)C8—C13—C14—C5−1.14 (14)
C13—C9—C11—C12−1.11 (14)C1—C2—O15—C163.06 (18)
C2—C1—C11—C9−179.81 (10)C3—C2—O15—C16−176.11 (12)
C2—C1—C11—C120.45 (15)C13—C9—O17—C18−88.82 (11)
C14—N10—C12—C4−179.03 (10)C11—C9—O17—C1895.56 (11)
C14—N10—C12—C111.18 (15)C9—O17—C18—C194.98 (14)
C3—C4—C12—N10−179.88 (11)C9—O17—C18—C23−175.51 (9)
C3—C4—C12—C11−0.07 (17)C23—C18—C19—C201.71 (16)
C9—C11—C12—N10−0.46 (15)O17—C18—C19—C20−178.82 (9)
C1—C11—C12—N10179.31 (10)C18—C19—C20—C21−0.10 (17)
C9—C11—C12—C4179.75 (9)C19—C20—C21—C22−0.95 (19)
C1—C11—C12—C4−0.49 (15)C20—C21—C22—C230.4 (2)
O17—C9—C13—C86.01 (15)C21—C22—C23—C181.14 (18)
C11—C9—C13—C8−178.49 (9)C19—C18—C23—C22−2.23 (16)
O17—C9—C13—C14−173.68 (8)O17—C18—C23—C22178.25 (10)
Cg2 and Cg4 are the centroids of the C1–C4/C11/C12 and C18–C23 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C19—H19···N10i0.932.603.487 (2)160
C6—H6···Cg4ii0.932.803.459 (2)129
C16—H16B···Cg4iii0.962.943.658 (2)133
C20—H20···Cg2iv0.932.713.576 (2)156
IJCgI···CgJDihedral angleCgI_PerpCgI_Offset
11i3.984 (1)0.03.569 (1)1.770 (1)
23i3.932 (1)1.63.564 (1)1.661 (1)
32i3.932 (1)1.63.541 (1)1.707 (1)
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 and Cg4 are the centroids of the C1–C4/C11/C12 and C18–C23 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C19—H19⋯N10i0.932.603.487 (2)160
C6—H6⋯Cg4ii0.932.803.459 (2)129
C16—H16BCg4iii0.962.943.658 (2)133
C20—H20⋯Cg2iv0.932.713.576 (2)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Table 2

π–π inter­actions (Å,°)

Cg1, Cg2 and Cg3 are the centroids of the C9/N10/C11–C14, C1–C4/C11/C12 and C5–C8/C13/C14 rings, respectively. CgI⋯CgJ is the distance between ring centroids. The dihedral angle is that between the planes of the rings I and J. CgI_Perp is the perpendicular distance of CgI from ring J. CgI_Offset is the distance between CgI and the perpendicular projection of CgJ on ring I.

IJCgICgJDihedral angleCgI_PerpCgI_Offset
11i3.984 (1)0.03.569 (1)1.770 (1)
23i3.932 (1)1.63.564 (1)1.661 (1)
32i3.932 (1)1.63.541 (1)1.707 (1)

Symmetry code: (i) –x, –y, –z + 1.

  6 in total

1.  Tetrakis-acridinyl peptide: a novel fluorometric reagent for nucleic acid analysis based on the fluorescence dequenching upon DNA binding.

Authors:  Hiroyuki Ueyama; Makoto Takagi; Shigeori Takenaka
Journal:  Analyst       Date:  2002-07       Impact factor: 4.616

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Interest of acridine derivatives in the anticancer chemotherapy.

Authors:  M Demeunynck; F Charmantray; A Martelli
Journal:  Curr Pharm Des       Date:  2001-11       Impact factor: 3.116

4.  9-(2-Chloroethylamino)acridine monohydrate and its precursor 9-phenoxyacridine.

Authors:  Youssif Ebead; Artur Sikorski; Karol Krzymiński; Tadeusz Lis; Jerzy Błazejowski
Journal:  Acta Crystallogr C       Date:  2005-01-15       Impact factor: 1.172

5.  Synthesis and antiinflammatory evaluation of 9-anilinoacridine and 9-phenoxyacridine derivatives.

Authors:  Yeh-Long Chen; Chih-Ming Lu; I-Li Chen; Lo-Ti Tsao; Jih-Pyang Wang
Journal:  J Med Chem       Date:  2002-10-10       Impact factor: 7.446

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  4'-(4-Chloro-phen-yl)-3'-(4-meth-oxy-phen-yl)-3,4-dihydro-1H,4'H-spiro-[acridine-2,5'-isoxazol]-1-one.

Authors:  Ponmudisettu Narayanan; Shanmugavel Uma Maheswari; Krishnan Sethusankar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20

2.  (2RS,5'RS)-3',4'-Bis(4-chloro-phen-yl)-3,4-dihydro-spiro-[acridine-2,5'(4'H)-[1,2]oxazol]-1(2H)-one.

Authors:  Ponmudisettu Narayanan; Shanmugavel Uma Maheswari; Krishnan Sethusankar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-07
  2 in total

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