Literature DB >> 23468768

Diammine{N-[2-(hy-droxy-imino)-propion-yl]-N'-[2-(oxidoimino)-propion-yl]propane-1,3-diaminido-κ(4) N,N',N'',N'''}iron(III).

Stefania Tomyn1, Matti Haukka, Ruslan Nedelkov.   

Abstract

In the title compound, [Fe(C9H13N4O4)(NH3)2], the Fe(III) atom, lying on a mirror plane, is coordinated by four N atoms of a triply deprotonated tetra-dentate N-[2-(hy-droxy-imino)-propion-yl]-N'-[2-(oxidoimino)-propion-yl]propane-1,3-diaminide ligand in the equatorial plane and two N atoms of two ammonia mol-ecules at the axial positions in a distorted octa-hedral geometry. A short intra-molecular O-H⋯O hydrogen bond between the cis-disposed oxime O atoms stabilizes the pseudo-macrocyclic configuration of the ligand. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds into a three-dimensional network. The ligand has a mirror-plane symmetry. One of the methyl-ene groups of the propane bridge is disordered over two sets of sites with equal occupancy factors.

Entities:  

Year:  2012        PMID: 23468768      PMCID: PMC3588803          DOI: 10.1107/S160053681204826X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For oximes as potential bridging ligands, see: Moroz et al. (2008 ▶, 2010 ▶); Skopenko et al. (1990 ▶). For oximes stabilizing high oxidation states of metal ions, see: Fritsky et al. (1998 ▶, 2006 ▶); Kanderal et al. (2005 ▶). For the coordination chemistry of tetradentate open-chain ligands derived from oximes and amides, see: Duda et al. (1997 ▶); Fritsky et al. (2004 ▶); Kufelnicki et al. (2010 ▶). For related structures, see: Dvorkin et al. (1990a ▶,b ▶); Lampeka et al. (1989 ▶); Mokhir et al. (2002 ▶); Onindo et al. (1995 ▶); Sliva et al. (1997a ▶,b ▶).

Experimental

Crystal data

[Fe(C9H13N4O4)(NH3)2] M = 331.15 Monoclinic, a = 8.9111 (3) Å b = 7.2255 (3) Å c = 10.6194 (4) Å β = 108.994 (2)° V = 646.52 (4) Å3 Z = 2 Mo Kα radiation μ = 1.19 mm−1 T = 100 K 0.20 × 0.09 × 0.04 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.795, T max = 0.954 12359 measured reflections 1599 independent reflections 1361 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.074 S = 1.04 1599 reflections 124 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.46 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681204826X/hy2607sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204826X/hy2607Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Fe(C9H13N4O4)(NH3)2]F(000) = 346.0
Mr = 331.15Dx = 1.701 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 2700 reflections
a = 8.9111 (3) Åθ = 1.0–27.5°
b = 7.2255 (3) ŵ = 1.19 mm1
c = 10.6194 (4) ÅT = 100 K
β = 108.994 (2)°Block, red
V = 646.52 (4) Å30.20 × 0.09 × 0.04 mm
Z = 2
Nonius KappaCCD diffractometer1599 independent reflections
Radiation source: fine-focus sealed tube1361 reflections with I > 2σ(I)
Horizontally mounted graphite crystal monochromatorRint = 0.047
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 2.4°
φ and ω scans with κ offseth = −11→11
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)k = −9→9
Tmin = 0.795, Tmax = 0.954l = −13→13
12359 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.028P)2 + 0.7141P] where P = (Fo2 + 2Fc2)/3
1599 reflections(Δ/σ)max < 0.001
124 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = −0.46 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Fe10.84000 (4)0.75000.68148 (4)0.01316 (12)
O11.1762 (2)0.75000.72129 (19)0.0199 (4)
H1O1.11800.75000.62580.030*
O20.9831 (2)0.75001.07989 (18)0.0220 (4)
O30.4412 (2)0.75000.36943 (19)0.0196 (4)
O40.9952 (2)0.75000.48443 (18)0.0162 (4)
N50.85135 (18)1.0255 (2)0.67972 (15)0.0151 (3)
H5D0.90631.06180.62520.023*
H5E0.90161.06740.76370.023*
H5F0.75141.07300.64940.023*
N11.0616 (3)0.75000.7808 (2)0.0148 (4)
N20.8273 (3)0.75000.8580 (2)0.0149 (4)
N30.6183 (3)0.75000.5839 (2)0.0146 (4)
N40.8536 (2)0.75000.5050 (2)0.0135 (4)
C11.1043 (3)0.75000.9092 (3)0.0166 (5)
C21.2708 (3)0.75000.9983 (3)0.0243 (6)
H2A1.27410.72151.08940.036*0.50
H2B1.31770.87220.99640.036*0.50
H2C1.33100.65630.96810.036*0.50
C30.9631 (3)0.75000.9576 (3)0.0162 (5)
C40.6775 (3)0.75000.8870 (3)0.0191 (6)
H4A0.69400.81190.97360.023*0.50
H4B0.64560.62050.89520.023*0.50
C50.5460 (4)0.8461 (6)0.7819 (4)0.0181 (8)0.50
H5A0.58110.97330.77080.022*0.50
H5B0.45340.85640.81360.022*0.50
C60.4926 (3)0.75000.6449 (3)0.0187 (6)
H6A0.46180.62070.65550.022*0.50
H6B0.39810.81450.58520.022*0.50
C70.5789 (3)0.75000.4522 (3)0.0152 (5)
C80.7221 (3)0.75000.4066 (3)0.0152 (5)
C90.7113 (3)0.75000.2641 (3)0.0229 (6)
H9A0.73490.87420.23860.034*0.50
H9B0.60380.71420.20920.034*0.50
H9C0.78800.66160.25050.034*0.50
U11U22U33U12U13U23
Fe10.01225 (19)0.0146 (2)0.01244 (19)0.0000.00372 (14)0.000
O10.0132 (9)0.0290 (11)0.0181 (10)0.0000.0062 (8)0.000
O20.0250 (10)0.0279 (11)0.0107 (9)0.0000.0027 (8)0.000
O30.0121 (9)0.0254 (11)0.0183 (10)0.0000.0006 (7)0.000
O40.0119 (8)0.0212 (10)0.0174 (9)0.0000.0073 (7)0.000
N50.0155 (7)0.0153 (8)0.0139 (7)0.0005 (6)0.0041 (6)0.0013 (6)
N10.0135 (10)0.0150 (11)0.0162 (11)0.0000.0052 (8)0.000
N20.0150 (10)0.0172 (11)0.0131 (10)0.0000.0052 (8)0.000
N30.0128 (10)0.0175 (11)0.0142 (11)0.0000.0053 (8)0.000
N40.0120 (10)0.0139 (11)0.0153 (11)0.0000.0053 (8)0.000
C10.0172 (13)0.0147 (13)0.0147 (12)0.0000.0007 (10)0.000
C20.0201 (14)0.0317 (17)0.0174 (14)0.0000.0011 (11)0.000
C30.0201 (13)0.0128 (12)0.0134 (12)0.0000.0025 (10)0.000
C40.0181 (13)0.0229 (14)0.0181 (13)0.0000.0086 (11)0.000
C50.0158 (17)0.020 (2)0.0206 (19)0.0000 (15)0.0091 (15)0.0001 (15)
C60.0135 (12)0.0250 (15)0.0187 (13)0.0000.0067 (10)0.000
C70.0147 (12)0.0127 (12)0.0174 (12)0.0000.0042 (10)0.000
C80.0153 (12)0.0157 (12)0.0146 (12)0.0000.0048 (10)0.000
C90.0190 (14)0.0350 (17)0.0124 (13)0.0000.0022 (11)0.000
Fe1—N31.909 (2)N4—O4i1.349 (3)
Fe1—N11.912 (2)C1—C21.478 (4)
Fe1—N21.914 (2)C1—C31.506 (4)
Fe1—N41.917 (2)C2—H2A0.9800
Fe1—N51.9932 (16)C2—H2B0.9800
O1—N11.364 (3)C2—H2C0.9800
O1—H1O0.9769C4—C51.500 (4)
O2—C31.252 (3)C4—H4A0.9900
O3—C71.255 (3)C4—H4B0.9900
O4—O4i0.000 (4)C5—C61.541 (4)
O4—N41.349 (3)C5—H5A0.9900
N5—H5D0.9100C5—H5B0.9900
N5—H5E0.9100C6—H6A0.9900
N5—H5F0.9100C6—H6B0.9900
N1—C11.291 (3)C7—C81.505 (4)
N2—C31.323 (3)C8—C91.485 (4)
N2—C41.464 (3)C9—H9A0.9800
N3—C71.327 (3)C9—H9B0.9800
N3—C61.465 (3)C9—H9C0.9800
N4—C81.292 (3)
N3—Fe1—N1179.44 (10)C1—C2—H2A109.5
N3—Fe1—N298.66 (9)C1—C2—H2B109.5
N1—Fe1—N280.78 (9)H2A—C2—H2B109.5
N3—Fe1—N481.55 (9)C1—C2—H2C109.5
N1—Fe1—N499.01 (9)H2A—C2—H2C109.5
N2—Fe1—N4179.79 (9)H2B—C2—H2C109.5
N3—Fe1—N592.39 (4)O2—C3—N2127.8 (3)
N1—Fe1—N587.63 (5)O2—C3—C1120.1 (2)
N2—Fe1—N591.64 (5)N2—C3—C1112.0 (2)
N4—Fe1—N588.35 (5)N2—C4—C5112.9 (2)
N3—Fe1—N5i92.39 (5)N2—C4—H4A109.0
N1—Fe1—N5i87.63 (4)C5—C4—H4A109.0
N2—Fe1—N5i91.64 (5)N2—C4—H4B109.0
N4—Fe1—N5i88.35 (5)C5—C4—H4B109.0
N5—Fe1—N5i173.75 (9)H4A—C4—H4B107.8
N1—O1—H1O104.8C4—C5—C6114.8 (3)
Fe1—N5—H5D109.5C4—C5—H5A108.6
Fe1—N5—H5E109.5C6—C5—H5A108.6
H5D—N5—H5E109.5C4—C5—H5B108.6
Fe1—N5—H5F109.5C6—C5—H5B108.6
H5D—N5—H5F109.5H5A—C5—H5B107.5
H5E—N5—H5F109.5N3—C6—C5111.8 (2)
C1—N1—O1118.8 (2)N3—C6—H6A109.3
C1—N1—Fe1118.60 (18)C5—C6—H6A109.3
O1—N1—Fe1122.60 (16)N3—C6—H6B109.3
C3—N2—C4119.4 (2)C5—C6—H6B109.3
C3—N2—Fe1116.91 (18)H6A—C6—H6B107.9
C4—N2—Fe1123.68 (17)O3—C7—N3127.0 (2)
C7—N3—C6119.2 (2)O3—C7—C8120.8 (2)
C7—N3—Fe1116.37 (17)N3—C7—C8112.2 (2)
C6—N3—Fe1124.43 (17)N4—C8—C9124.4 (2)
C8—N4—O4i121.3 (2)N4—C8—C7112.4 (2)
C8—N4—O4121.3 (2)C9—C8—C7123.2 (2)
C8—N4—Fe1117.49 (18)C8—C9—H9A109.5
O4i—N4—Fe1121.24 (16)C8—C9—H9B109.5
O4—N4—Fe1121.24 (16)H9A—C9—H9B109.5
N1—C1—C2124.4 (3)C8—C9—H9C109.5
N1—C1—C3111.7 (2)H9A—C9—H9C109.5
C2—C1—C3123.9 (2)H9B—C9—H9C109.5
N5—Fe1—N1—C192.04 (4)N5—Fe1—N4—C8−92.66 (4)
N5i—Fe1—N1—C1−92.04 (4)N5i—Fe1—N4—C892.66 (4)
N5—Fe1—N1—O1−87.96 (4)N5—Fe1—N4—O4i87.34 (4)
N5i—Fe1—N1—O187.96 (4)N5i—Fe1—N4—O4i−87.34 (4)
N5—Fe1—N2—C3−87.34 (4)N5—Fe1—N4—O487.34 (4)
N5i—Fe1—N2—C387.34 (4)N5i—Fe1—N4—O4−87.34 (4)
N5—Fe1—N2—C492.66 (4)C3—N2—C4—C5149.83 (18)
N5i—Fe1—N2—C4−92.66 (4)Fe1—N2—C4—C5−30.17 (18)
N5—Fe1—N3—C787.98 (5)N2—C4—C5—C666.1 (3)
N5i—Fe1—N3—C7−87.98 (5)C7—N3—C6—C5−150.96 (17)
N5—Fe1—N3—C6−92.02 (5)Fe1—N3—C6—C529.04 (17)
N5i—Fe1—N3—C692.02 (5)C4—C5—C6—N3−65.3 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O40.981.542.508 (3)168
N5—H5D···O4ii0.912.153.015 (2)158
N5—H5E···O2iii0.912.112.979 (2)160
N5—H5F···O3iv0.912.102.969 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯O40.981.542.508 (3)168
N5—H5D⋯O4i 0.912.153.015 (2)158
N5—H5E⋯O2ii 0.912.112.979 (2)160
N5—H5F⋯O3iii 0.912.102.969 (2)160

Symmetry codes: (i) ; (ii) ; (iii) .

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