Literature DB >> 23466039

The contribution of intrinsic disorder prediction to the elucidation of protein function.

Domenico Cozzetto1, David T Jones.   

Abstract

Current knowledge of protein function stems primarily from the detailed characterization of some protein domain families and from extensive homology-based annotation transfers. Intrinsically disordered proteins exploit complementary molecular recognition mechanisms and their study has potential to make a significant contribution to the field. Building on established computational biology techniques, efforts are now aimed at unveiling their biological roles at the molecular and system level. Recent developments towards identifying functional sites in disordered regions, and analysing how the occurrence of protein disorder in a gene can provide insight into its biochemical and cellular function are discussed.
Copyright © 2013. Published by Elsevier Ltd.

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Year:  2013        PMID: 23466039     DOI: 10.1016/j.sbi.2013.02.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  25 in total

1.  Resolving the ambiguity: Making sense of intrinsic disorder when PDB structures disagree.

Authors:  Shelly DeForte; Vladimir N Uversky
Journal:  Protein Sci       Date:  2016-01-09       Impact factor: 6.725

2.  Molecular modeling and in silico characterization of GmABCC5: a phytate transporter and potential target for low-phytate crops.

Authors:  Vanita Pandey; Veda Krishnan; Nabaneeta Basak; Ashish Marathe; Vinutha Thimmegowda; Anil Dahuja; Monica Jolly; Archana Sachdev
Journal:  3 Biotech       Date:  2018-01-04       Impact factor: 2.406

3.  Molecular characterization of teosinte branched1 gene governing branching architecture in cultivated maize and wild relatives.

Authors:  Nitish Ranjan Prakash; Rashmi Chhabra; Rajkumar Uttamrao Zunjare; Vignesh Muthusamy; Firoz Hossain
Journal:  3 Biotech       Date:  2020-01-29       Impact factor: 2.406

4.  Effect of temperature on the conformation of natively unfolded protein 4E-BP1 in aqueous and mixed solutions containing trifluoroethanol and hexafluoroisopropanol.

Authors:  Ellen V Hackl
Journal:  Protein J       Date:  2015-02       Impact factor: 2.371

5.  FFPred 3: feature-based function prediction for all Gene Ontology domains.

Authors:  Domenico Cozzetto; Federico Minneci; Hannah Currant; David T Jones
Journal:  Sci Rep       Date:  2016-08-26       Impact factor: 4.379

6.  The molecular basis of emerin-emerin and emerin-BAF interactions.

Authors:  Jason M Berk; Dan N Simon; Clifton R Jenkins-Houk; Jason W Westerbeck; Line M Grønning-Wang; Cathrine R Carlson; Katherine L Wilson
Journal:  J Cell Sci       Date:  2014-07-22       Impact factor: 5.285

Review 7.  The roles of intrinsic disorder-based liquid-liquid phase transitions in the "Dr. Jekyll-Mr. Hyde" behavior of proteins involved in amyotrophic lateral sclerosis and frontotemporal lobar degeneration.

Authors:  Vladimir N Uversky
Journal:  Autophagy       Date:  2017-12-17       Impact factor: 16.016

8.  Assessment of protein disorder region predictions in CASP10.

Authors:  Bohdan Monastyrskyy; Andriy Kryshtafovych; John Moult; Anna Tramontano; Krzysztof Fidelis
Journal:  Proteins       Date:  2013-11-22

9.  Analyzing IDPs in Interactomes.

Authors:  Vladimir N Uversky
Journal:  Methods Mol Biol       Date:  2020

Review 10.  Classification of intrinsically disordered regions and proteins.

Authors:  Robin van der Lee; Marija Buljan; Benjamin Lang; Robert J Weatheritt; Gary W Daughdrill; A Keith Dunker; Monika Fuxreiter; Julian Gough; Joerg Gsponer; David T Jones; Philip M Kim; Richard W Kriwacki; Christopher J Oldfield; Rohit V Pappu; Peter Tompa; Vladimir N Uversky; Peter E Wright; M Madan Babu
Journal:  Chem Rev       Date:  2014-04-29       Impact factor: 60.622

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