Literature DB >> 23454349

Ligand-dependent cholesterol interactions with the human A(2A) adenosine receptor.

Ji Young Lee1, Rohan Patel, Edward Lyman.   

Abstract

We present nearly 10 μs of all-atom simulation data of a G-protein coupled receptor, the human A2A adenosine receptor, bound to four different ligands. Our focus is on binding of cholesterol to the "cholesterol consensus motif," a cluster of five amino acids on the second and fourth transmembrane helices, which interact with two cholesterols in the intracellular leaflet of the bilayer. We find evidence for a ligand-specific interaction between the CCM and cholesterol, mediated by the rotameric dynamics and configuration of Trp129. Binding of the synthetic agonist UK432097 disrupts hydrogen bonding between Trp129 and Ser47, which activates the rotameric dynamics of Trp129 and disrupts the interaction with one of the two cholesterols. We also investigate the effect of four thermostabilizing mutations, three of which are located on helix two. The conformational stability of helix two has been proposed to be sensitive to interaction with cholesterol in the CCM, suggesting a mechanism for the thermostabilization. However, our data are instead suggestive of a force-field dependent "straightening" of helix two, and therefore offer no basis for rationalizing the effect of the quadruple mutant.
Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

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Year:  2013        PMID: 23454349      PMCID: PMC3652319          DOI: 10.1016/j.chemphyslip.2013.02.002

Source DB:  PubMed          Journal:  Chem Phys Lipids        ISSN: 0009-3084            Impact factor:   3.329


  28 in total

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Authors:  D C Mitchell; M Straume; J L Miller; B J Litman
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2.  Toward rational design of protein detergent complexes: determinants of mixed micelles that are critical for the in vitro stabilization of a G-protein coupled receptor.

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3.  Membrane cholesterol stabilizes the human serotonin(1A) receptor.

Authors:  Roopali Saxena; Amitabha Chattopadhyay
Journal:  Biochim Biophys Acta       Date:  2012-08-08

4.  Agonist dynamics and conformational selection during microsecond simulations of the A(2A) adenosine receptor.

Authors:  Ji Young Lee; Edward Lyman
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

Review 5.  Role of cholesterol in the function and organization of G-protein coupled receptors.

Authors:  Thomas J Pucadyil; Amitabha Chattopadhyay
Journal:  Prog Lipid Res       Date:  2006-03-20       Impact factor: 16.195

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Authors:  K Vanommeslaeghe; E Hatcher; C Acharya; S Kundu; S Zhong; J Shim; E Darian; O Guvench; P Lopes; I Vorobyov; A D Mackerell
Journal:  J Comput Chem       Date:  2010-03       Impact factor: 3.376

7.  Regulation of membrane proteins by dietary lipids: effects of cholesterol and docosahexaenoic acid acyl chain-containing phospholipids on rhodopsin stability and function.

Authors:  Michael P Bennett; Drake C Mitchell
Journal:  Biophys J       Date:  2008-04-18       Impact factor: 4.033

8.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

9.  Agonist-bound adenosine A2A receptor structures reveal common features of GPCR activation.

Authors:  Guillaume Lebon; Tony Warne; Patricia C Edwards; Kirstie Bennett; Christopher J Langmead; Andrew G W Leslie; Christopher G Tate
Journal:  Nature       Date:  2011-05-18       Impact factor: 49.962

10.  Comparison of Secondary Structure Formation Using 10 Different Force Fields in Microsecond Molecular Dynamics Simulations.

Authors:  Elio A Cino; Wing-Yiu Choy; Mikko Karttunen
Journal:  J Chem Theory Comput       Date:  2012-06-19       Impact factor: 6.006

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  12 in total

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2.  Membrane cholesterol depletion reduces downstream signaling activity of the adenosine A2A receptor.

Authors:  Claire McGraw; Lewen Yang; Ilya Levental; Edward Lyman; Anne Skaja Robinson
Journal:  Biochim Biophys Acta Biomembr       Date:  2019-01-08       Impact factor: 3.747

3.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
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4.  Identification of Two New Cholesterol Interaction Sites on the A2A Adenosine Receptor.

Authors:  Eric Rouviere; Clément Arnarez; Lewen Yang; Edward Lyman
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

5.  Local Enrichment of Unsaturated Chains around the A2A Adenosine Receptor.

Authors:  Lewen Yang; Edward Lyman
Journal:  Biochemistry       Date:  2019-09-19       Impact factor: 3.162

6.  Activation of G-protein-coupled receptors is thermodynamically linked to lipid solvation.

Authors:  Alison N Leonard; Edward Lyman
Journal:  Biophys J       Date:  2021-02-26       Impact factor: 4.033

Review 7.  Computational Modeling of Realistic Cell Membranes.

Authors:  Siewert J Marrink; Valentina Corradi; Paulo C T Souza; Helgi I Ingólfsson; D Peter Tieleman; Mark S P Sansom
Journal:  Chem Rev       Date:  2019-01-09       Impact factor: 72.087

Review 8.  Blood Platelet Adenosine Receptors as Potential Targets for Anti-Platelet Therapy.

Authors:  Nina Wolska; Marcin Rozalski
Journal:  Int J Mol Sci       Date:  2019-11-03       Impact factor: 5.923

9.  Impact of Lipid Composition and Receptor Conformation on the Spatio-temporal Organization of μ-Opioid Receptors in a Multi-component Plasma Membrane Model.

Authors:  Kristen A Marino; Diego Prada-Gracia; Davide Provasi; Marta Filizola
Journal:  PLoS Comput Biol       Date:  2016-12-13       Impact factor: 4.475

Review 10.  In Silico Drug Design for Purinergic GPCRs: Overview on Molecular Dynamics Applied to Adenosine and P2Y Receptors.

Authors:  Veronica Salmaso; Kenneth A Jacobson
Journal:  Biomolecules       Date:  2020-05-26
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