Literature DB >> 23444362

ClearT: a detergent- and solvent-free clearing method for neuronal and non-neuronal tissue.

Takaaki Kuwajima1, Austen A Sitko, Punita Bhansali, Chris Jurgens, William Guido, Carol Mason.   

Abstract

We describe a clearing method for enhanced visualization of cell morphology and connections in neuronal and non-neuronal tissue. Using Clear(T) or Clear(T2), which are composed of formamide or formamide/polyethylene glycol, respectively, embryos, whole mounts and thick brain sections can be rapidly cleared with minimal volume changes. Unlike other available clearing techniques, these methods do not use detergents or solvents, and thus preserve lipophilic dyes, fluorescent tracers and immunohistochemical labeling, as well as fluorescent-protein labeling.

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Year:  2013        PMID: 23444362      PMCID: PMC3912244          DOI: 10.1242/dev.091844

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  15 in total

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Journal:  Nat Med       Date:  2011-12-25       Impact factor: 53.440

Review 2.  Genetic dissection of neural circuits.

Authors:  Liqun Luo; Edward M Callaway; Karel Svoboda
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3.  Distinct roles for secreted semaphorin signaling in spinal motor axon guidance.

Authors:  Andrea B Huber; Artur Kania; Tracy S Tran; Chenghua Gu; Natalia De Marco Garcia; Ivo Lieberam; Dontais Johnson; Thomas M Jessell; David D Ginty; Alex L Kolodkin
Journal:  Neuron       Date:  2005-12-22       Impact factor: 17.173

4.  Structural and functional composition of the developing retinogeniculate pathway in the mouse.

Authors:  Lisa Jaubert-Miazza; Erick Green; Fu-Sun Lo; Kim Bui; Jeremy Mills; William Guido
Journal:  Vis Neurosci       Date:  2005 Sep-Oct       Impact factor: 3.241

5.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

6.  Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP.

Authors:  G Feng; R H Mellor; M Bernstein; C Keller-Peck; Q T Nguyen; M Wallace; J M Nerbonne; J W Lichtman; J R Sanes
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7.  Switching retinogeniculate axon laterality leads to normal targeting but abnormal eye-specific segregation that is activity dependent.

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Journal:  J Neurosci       Date:  2009-11-25       Impact factor: 6.167

8.  Molecular mechanism of polyethylene glycol mediated stabilization of protein.

Authors:  Sanjay Rawat; C Raman Suri; Debendra K Sahoo
Journal:  Biochem Biophys Res Commun       Date:  2010-01-25       Impact factor: 3.575

9.  A rapid and non-invasive selection of transgenic embryos before implantation using green fluorescent protein (GFP).

Authors:  M Ikawa; K Kominami; Y Yoshimura; K Tanaka; Y Nishimune; M Okabe
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10.  Specificity and plasticity of thalamocortical connections in Sema6A mutant mice.

Authors:  Graham E Little; Guillermina López-Bendito; Annette E Rünker; Noelia García; Maria C Piñon; Alain Chédotal; Zoltán Molnár; Kevin J Mitchell
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  185 in total

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Journal:  Tissue Eng Part C Methods       Date:  2015-10-06       Impact factor: 3.056

2.  Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Hiroko Yukinaga; Akihiro Kuno; Hiroki R Ueda
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Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

4.  Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.

Authors:  Ken Y Chan; Nicholas C Flytzanis; Bin Yang; Jennifer B Treweek; Benjamin E Deverman; Alon Greenbaum; Antti Lignell; Cheng Xiao; Long Cai; Mark S Ladinsky; Pamela J Bjorkman; Charless C Fowlkes; Viviana Gradinaru
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

Review 5.  Extracting structural and functional features of widely distributed biological circuits with single cell resolution via tissue clearing and delivery vectors.

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Journal:  Curr Opin Biotechnol       Date:  2016-07-06       Impact factor: 9.740

Review 6.  The luminal connection: from animal development to lumopathies.

Authors:  Robert M Kao
Journal:  Organogenesis       Date:  2013-04-01       Impact factor: 2.500

7.  Seamless reconstruction of intact adult-born neurons by serial end-block imaging reveals complex axonal guidance and development in the adult hippocampus.

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8.  The use of optical clearing and multiphoton microscopy for investigation of three-dimensional tissue-engineered constructs.

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9.  SoxC Transcription Factors Promote Contralateral Retinal Ganglion Cell Differentiation and Axon Guidance in the Mouse Visual System.

Authors:  Takaaki Kuwajima; Célia A Soares; Austen A Sitko; Véronique Lefebvre; Carol Mason
Journal:  Neuron       Date:  2017-02-16       Impact factor: 17.173

10.  Increased regurgitant flow causes endocardial cushion defects in an avian embryonic model of congenital heart disease.

Authors:  Stephanie M Ford; Matthew T McPheeters; Yves T Wang; Pei Ma; Shi Gu; James Strainic; Christopher Snyder; Andrew M Rollins; Michiko Watanabe; Michael W Jenkins
Journal:  Congenit Heart Dis       Date:  2017-02-17       Impact factor: 2.007

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