Literature DB >> 2344356

The pyrimidine/purine-biased region of the epidermal growth factor receptor gene is sensitive to S1 nuclease and may form an intramolecular triplex.

M Kato1, J Kudoh, N Shimizu.   

Abstract

The pyrimidine/purine-biased region located upstream of the EGF (epidermal growth factor) receptor gene transcription initiation sites was sensitive to S1 nuclease when under superhelical tension. The structural basis of this specific reactivity to S1 nuclease was probed by the use of diethyl pyrocarbonate. The patterns of modification suggested that the H-form proposed by Mirkin, Lyamichev, Drushlyak, Dobrynin, Filippov & Frank-Kamenetskii [Nature (London) (1987) 330, 495-497], which includes an intramolecular triplex and a single-stranded region, was the most plausible model for the sequence tested. The results of dimethyl sulphate modification also supported this model.

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Year:  1990        PMID: 2344356      PMCID: PMC1131408          DOI: 10.1042/bj2680175

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  38 in total

1.  Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies.

Authors:  Y P Tsao; H Y Wu; L F Liu
Journal:  Cell       Date:  1989-01-13       Impact factor: 41.582

2.  Modulation of epidermal growth factor receptor proto-oncogene transcription by a promoter site sensitive to S1 nuclease.

Authors:  A C Johnson; Y Jinno; G T Merlino
Journal:  Mol Cell Biol       Date:  1988-10       Impact factor: 4.272

3.  Single strands, triple strands, and kinks in H-DNA.

Authors:  H Htun; J E Dahlberg
Journal:  Science       Date:  1988-09-30       Impact factor: 47.728

4.  Epidermal growth factor receptor gene promoter. Deletion analysis and identification of nuclear protein binding sites.

Authors:  A C Johnson; S Ishii; Y Jinno; I Pastan; G T Merlino
Journal:  J Biol Chem       Date:  1988-04-25       Impact factor: 5.157

5.  Immunofluorescent staining of mammalian nuclei and chromosomes with a monoclonal antibody to triplex DNA.

Authors:  G D Burkholder; L J Latimer; J S Lee
Journal:  Chromosoma       Date:  1988-11       Impact factor: 4.316

6.  Chemical probing of homopurine-homopyrimidine mirror repeats in supercoiled DNA.

Authors:  O N Voloshin; S M Mirkin; V I Lyamichev; B P Belotserkovskii; M D Frank-Kamenetskii
Journal:  Nature       Date:  1988-06-02       Impact factor: 49.962

7.  Epidermal growth factor (EGF) receptor gene transcription. Requirement for Sp1 and an EGF receptor-specific factor.

Authors:  R Kageyama; G T Merlino; I Pastan
Journal:  J Biol Chem       Date:  1988-05-05       Impact factor: 5.157

Review 8.  Topology and formation of triple-stranded H-DNA.

Authors:  H Htun; J E Dahlberg
Journal:  Science       Date:  1989-03-24       Impact factor: 47.728

9.  A transcription factor active on the epidermal growth factor receptor gene.

Authors:  R Kageyama; G T Merlino; I Pastan
Journal:  Proc Natl Acad Sci U S A       Date:  1988-07       Impact factor: 11.205

10.  Mega base map of the epidermal growth factor (EGF) receptor gene flanking regions and structure of the amplification units in EGF receptor-hyperproducing squamous carcinoma cells.

Authors:  K Kawasaki; J Kudoh; K Omoto; N Shimizu
Journal:  Jpn J Cancer Res       Date:  1988-11
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  4 in total

1.  Molecular recognition via triplex formation of mixed purine/pyrimidine DNA sequences using oligoTRIPs.

Authors:  Jian-Sen Li; Fa-Xian Chen; Ronald Shikiya; Luis A Marky; Barry Gold
Journal:  J Am Chem Soc       Date:  2005-09-14       Impact factor: 15.419

2.  Chromatin structure of the EGFR gene suggests a role for intron 1 sequences in its regulation in breast cancer cells.

Authors:  S A Chrysogelos
Journal:  Nucleic Acids Res       Date:  1993-12-11       Impact factor: 16.971

3.  The structure of a Phaseolus vulgaris cDNA encoding the iron storage protein ferritin.

Authors:  M J Spence; M T Henzl; P J Lammers
Journal:  Plant Mol Biol       Date:  1991-09       Impact factor: 4.076

4.  Polypyrimidine/polypurine sequence in plasmid DNA enhances formation of dimer molecules in Escherichia coli. Dimerization of plasmid DNA in Escherichia coli.

Authors:  M Kato
Journal:  Mol Biol Rep       Date:  1993-10       Impact factor: 2.316

  4 in total

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