Literature DB >> 12944630

High-resolution wide-angle X-ray scattering of protein solutions: effect of beam dose on protein integrity.

Robert F Fischetti1, Diane J Rodi, Ahmed Mirza, Thomas C Irving, Elena Kondrashkina, Lee Makowski.   

Abstract

Wide-angle X-ray scattering patterns from proteins in solution contain information relevant to the determination of protein fold. At relevant scattering angles, however, these data are weak, and the degree to which they might be used to categorize the fold of a protein is unknown. Preliminary work has been performed at the BioCAT insertion-device beamline at the Advanced Photon Source which demonstrates that one can collect X-ray scattering data from proteins in solution to spacings of at least 2.2 A (q = 2.8 A(-1)). These data are sensitive to protein conformational states, and are in good agreement with the scattering predicted by the program CRYSOL using the known three-dimensional atomic coordinates of the protein. An important issue in the exploitation of this technique as a tool for structural genomics is the extent to which the high intensity of X-rays available at third-generation synchrotron sources chemically or structurally damage proteins. Various data-collection protocols have been investigated demonstrating conditions under which structural degradation of even sensitive proteins can be minimized, making this technique a viable tool for protein fold categorization, the study of protein folding, unfolding, protein-ligand interactions and domain movement.

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Year:  2003        PMID: 12944630     DOI: 10.1107/s0909049503016583

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  22 in total

1.  X-ray diffraction "fingerprinting" of DNA structure in solution for quantitative evaluation of molecular dynamics simulation.

Authors:  Xiaobing Zuo; Guanglei Cui; Kenneth M Merz; Ligang Zhang; Frederick D Lewis; David M Tiede
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

2.  The structural basis for regulated assembly and function of the transcriptional activator NtrC.

Authors:  Sacha De Carlo; Baoyu Chen; Timothy R Hoover; Elena Kondrashkina; Eva Nogales; B Tracy Nixon
Journal:  Genes Dev       Date:  2006-06-01       Impact factor: 11.361

3.  Molecular crowding inhibits intramolecular breathing motions in proteins.

Authors:  Lee Makowski; Diane J Rodi; Suneeta Mandava; David D L Minh; David B Gore; Robert F Fischetti
Journal:  J Mol Biol       Date:  2007-08-17       Impact factor: 5.469

4.  Analysis of self-associating proteins by singular value decomposition of solution scattering data.

Authors:  Tim E Williamson; Bruce A Craig; Elena Kondrashkina; Chris Bailey-Kellogg; Alan M Friedman
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

5.  Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints.

Authors:  Alexander Grishaev; Vitali Tugarinov; Lewis E Kay; Jill Trewhella; Ad Bax
Journal:  J Biomol NMR       Date:  2007-11-16       Impact factor: 2.835

6.  Gas-phase H/D exchange and collision cross sections of hemoglobin monomers, dimers, and tetramers.

Authors:  P John Wright; D J Douglas
Journal:  J Am Soc Mass Spectrom       Date:  2008-11-21       Impact factor: 3.109

7.  Measurements of accurate x-ray scattering data of protein solutions using small stationary sample cells.

Authors:  Xinguo Hong; Quan Hao
Journal:  Rev Sci Instrum       Date:  2009-01       Impact factor: 1.523

8.  Simulated x-ray scattering of protein solutions using explicit-solvent models.

Authors:  Sanghyun Park; Jaydeep P Bardhan; Benoît Roux; Lee Makowski
Journal:  J Chem Phys       Date:  2009-04-07       Impact factor: 3.488

9.  SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules.

Authors:  Jaydeep Bardhan; Sanghyun Park; Lee Makowski
Journal:  J Appl Crystallogr       Date:  2009-09-08       Impact factor: 3.304

10.  Analysis of PKR structure by small-angle scattering.

Authors:  Jennifer VanOudenhove; Eric Anderson; Susan Krueger; James L Cole
Journal:  J Mol Biol       Date:  2009-02-14       Impact factor: 5.469

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