Literature DB >> 23442915

Inclusion of lateral pressure/curvature stress effects in implicit membrane models.

Huan Zhan1, Themis Lazaridis.   

Abstract

Implicit membrane models usually treat the membrane as a hydrophobic slab and neglect lateral pressure/curvature stress effects. As a result, they cannot distinguish, for example, PE from PC lipids. Here, the implicit membrane model IMM1 is extended to include these effects using a combination of classical thermodynamics and membrane elasticity theory. The proposed model is tested by molecular dynamics simulation of the peptides alamethicin, melittin, cyclotide kalata B1, 18A, and KKpL15. The lateral pressure term stabilizes interfacial binding due to the negative pressure at the hydrocarbon-water interface. In agreement with experiment, increase in the peptide/lipid molar ratio shifts the equilibrium from the interfacial to the transmembrane orientation. Simulations of mixed DOPC/DOPE bilayers show that increase of the DOPE mole fraction in general stabilizes interfacial orientations and destabilizes transmembrane orientations. The extent of the stabilization or destabilization varies depending on the exact position of the peptides. The computational results are in good agreement with experiments.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23442915      PMCID: PMC3566461          DOI: 10.1016/j.bpj.2012.12.022

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  70 in total

1.  Evidence for membrane thinning effect as the mechanism for peptide-induced pore formation.

Authors:  Fang-Yu Chen; Ming-Tao Lee; Huey W Huang
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

2.  Membrane perturbation induced by interfacially adsorbed peptides.

Authors:  Assaf Zemel; Avinoam Ben-Shaul; Sylvio May
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

3.  Methodological problems in pressure profile calculations for lipid bilayers.

Authors:  Jacob Sonne; Flemming Y Hansen; Günther H Peters
Journal:  J Chem Phys       Date:  2005-03-22       Impact factor: 3.488

4.  Studies on the membrane interactions of the cyclotides kalata B1 and kalata B6 on model membrane systems by surface plasmon resonance.

Authors:  Hiroshi Kamimori; Kristopher Hall; David J Craik; Marie-Isabel Aguilar
Journal:  Anal Biochem       Date:  2005-02-01       Impact factor: 3.365

5.  Curvature and hydrophobic forces drive oligomerization and modulate activity of rhodopsin in membranes.

Authors:  Ana Vitória Botelho; Thomas Huber; Thomas P Sakmar; Michael F Brown
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

6.  Decoding the membrane activity of the cyclotide kalata B1: the importance of phosphatidylethanolamine phospholipids and lipid organization on hemolytic and anti-HIV activities.

Authors:  Sónia Troeira Henriques; Yen-Hua Huang; K Johan Rosengren; Henri G Franquelim; Filomena A Carvalho; Adam Johnson; Secondo Sonza; Gilda Tachedjian; Miguel A R B Castanho; Norelle L Daly; David J Craik
Journal:  J Biol Chem       Date:  2011-05-16       Impact factor: 5.157

7.  Lipid composition and the lateral pressure profile in bilayers.

Authors:  R S Cantor
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

8.  Mechanism of alamethicin insertion into lipid bilayers.

Authors:  K He; S J Ludtke; W T Heller; H W Huang
Journal:  Biophys J       Date:  1996-11       Impact factor: 4.033

9.  Influence of ethanol on lipid membranes: from lateral pressure profiles to dynamics and partitioning.

Authors:  Emma Terama; O H Samuli Ollila; Emppu Salonen; Amy C Rowat; Christa Trandum; Peter Westh; Michael Patra; Mikko Karttunen; Ilpo Vattulainen
Journal:  J Phys Chem B       Date:  2008-03-15       Impact factor: 2.991

10.  Effect of lipid composition on the topography of membrane-associated hydrophobic helices: stabilization of transmembrane topography by anionic lipids.

Authors:  Khurshida Shahidullah; Erwin London
Journal:  J Mol Biol       Date:  2008-04-16       Impact factor: 5.469

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  11 in total

Review 1.  Computational studies of peptide-induced membrane pore formation.

Authors:  Richard Lipkin; Themis Lazaridis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-08-05       Impact factor: 6.237

2.  Implicit Membrane Investigation of the Stability of Antimicrobial Peptide β-Barrels and Arcs.

Authors:  Richard B Lipkin; Themis Lazaridis
Journal:  J Membr Biol       Date:  2014-11-28       Impact factor: 1.843

3.  Nonlamellar-Phase-Promoting Colipids Enhance Segregation of Palmitoyl Ceramide in Fluid Bilayers.

Authors:  Anna Möuts; Tomoya Yamamoto; Thomas K M Nyholm; Michio Murata; J Peter Slotte
Journal:  Biophys J       Date:  2019-03-19       Impact factor: 4.033

4.  Protein arcs may form stable pores in lipid membranes.

Authors:  Lidia Prieto; Yi He; Themis Lazaridis
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

5.  Membrane Curvature Sensing by Amphipathic Helices: Insights from Implicit Membrane Modeling.

Authors:  Binod Nepal; John Leveritt; Themis Lazaridis
Journal:  Biophys J       Date:  2018-05-08       Impact factor: 4.033

6.  A thermodynamic approach to alamethicin pore formation.

Authors:  Asif Rahaman; Themis Lazaridis
Journal:  Biochim Biophys Acta       Date:  2013-09-23

Review 7.  Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms.

Authors:  Takaharu Mori; Naoyuki Miyashita; Wonpil Im; Michael Feig; Yuji Sugita
Journal:  Biochim Biophys Acta       Date:  2016-01-05

8.  A New Mixed All-Atom/Coarse-Grained Model: Application to Melittin Aggregation in Aqueous Solution.

Authors:  Mee Y Shelley; Myvizhi Esai Selvan; Jun Zhao; Volodymyr Babin; Chenyi Liao; Jianing Li; John C Shelley
Journal:  J Chem Theory Comput       Date:  2017-07-11       Impact factor: 6.006

9.  Membrane Stored Curvature Elastic Stress Modulates Recruitment of Maintenance Proteins PspA and Vipp1.

Authors:  Christopher McDonald; Goran Jovanovic; Oscar Ces; Martin Buck
Journal:  MBio       Date:  2015-09-01       Impact factor: 7.867

10.  The folding, stability and function of lactose permease differ in their dependence on bilayer lipid composition.

Authors:  Heather E Findlay; Paula J Booth
Journal:  Sci Rep       Date:  2017-10-12       Impact factor: 4.379

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