| Literature DB >> 23441115 |
Marco Ragusa1, Rosario Caltabiano, Andrea Russo, Lidia Puzzo, Teresio Avitabile, Antonio Longo, Mario D Toro, Cinzia Di Pietro, Michele Purrello, Michele Reibaldi.
Abstract
PURPOSE: Based on evidence that microRNAs (miRNAs) are found in many biologic fluids (e.g., urine, saliva, pleural fluid), we sought to detect the presence of miRNAs and analyze their profile in vitreous humor (VH) from patients affected by various ocular diseases.Entities:
Mesh:
Substances:
Year: 2013 PMID: 23441115 PMCID: PMC3580974
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
MiRNAs expressed in Vitreous Humor and their comparison with circulating miRNAs in serum.
| hsa-miR-628–5p | 15.98 | HE | |
| hsa-miR-518f | 17.23 | 1.20 | HE |
| hsa-miR-302c | 22.74 | HE | |
| hsa-miR-1274B | 23.93 | 0.39 | HE |
| hsa-miR-639 | 25.89 | HE | |
| hsa-miR-1260 | 26.80 | 2.69 | HE |
| U6 snRNA | 27.07 | 1.36 | HE |
| hsa-miR-720 | 27.11 | 0.91 | HE |
| hsa-miR-211 | 27.31 | HE | |
| hsa-let-7b | 27.43 | 2.51 | HE |
| hsa-miR-223 | 27.67 | 0.03 | HE |
| hsa-miR-9 | 27.76 | HE | |
| hsa-miR-1825 | 28.21 | NE | |
| hsa-miR-342–3p | 28.26 | 1.09 | NE |
| hsa-miR-338–5P | 28.94 | 0.0003 | NE |
| hsa-miR-1274A | 29.38 | 1.26 | NE |
| hsa-miR-596 | 29.78 | 0.33 | NE |
| hsa-let-7e | 29.85 | 0.61 | NE |
| hsa-miR-24 | 30.00 | NE | |
| hsa-miR-222 | 30.05 | 0.41 | NE |
| hsa-miR-19b | 30.18 | NE | |
| hsa-miR-452 | 30.57 | NE | |
| hsa-miR-320 | 30.58 | NE | |
| hsa-miR-17 | 30.77 | NE | |
| hsa-miR-146a | 30.78 | NE | |
| hsa-miR-106a | 30.78 | NE | |
| hsa-miR-204 | 30.80 | NE | |
| hsa-miR-663B | 30.88 | NE | |
| hsa-miR-526b | 30.94 | NE | |
| RNU48 | 31.11 | 3.57 | NE |
| hsa-miR-671–3p | 31.17 | NE | |
| hsa-miR-21 | 31.22 | 0.89 | NE |
| hsa-miR-484 | 31.40 | NE | |
| hsa-miR-9* | 31.41 | NE | |
| hsa-miR-191 | 31.49 | NE | |
| hsa-miR-34a | 31.49 | NE | |
| hsa-miR-214 | 31.61 | NE | |
| hsa-miR-200b | 31.94 | NE | |
| hsa-miR-184 | 31.99 | NE | |
| hsa-miR-193b | 32.18 | NE | |
| hsa-miR-92a | 32.29 | NE | |
| hsa-miR-200c | 32.44 | NE | |
| hsa-miR-892b | 32.44 | 0.36 | NE |
| hsa-miR-100 | 32.57 | NE | |
| hsa-miR-197 | 32.82 | 0.09 | NE |
| hsa-miR-30c | 32.95 | NE | |
| hsa-miR-574–3p | 32.97 | 0.50 | NE |
| mmu-miR-374–5p | 33.09 | 0.47 | NE |
| hsa-miR-125a-3p | 33.18 | NE | |
| hsa-miR-875–5p | 33.24 | NE | |
| hsa-miR-142–3p | 33.31 | 0.39 | NE |
| hsa-miR-30a-5p | 33.37 | NE | |
| hsa-miR-20a | 33.38 | NE | |
| hsa-miR-1290 | 33.47 | NE | |
| hsa-miR-328 | 33.54 | NE | |
| hsa-miR-199a-3p | 33.57 | 0.30 | NE |
| hsa-let-7c | 33.63 | NE | |
| hsa-miR-25 | 33.66 | NE | |
| hsa-miR-150 | 33.93 | NE | |
| hsa-miR-454 | 33.96 | 0.75 | NE |
| hsa-miR-340* | 33.96 | 0.62 | NE |
| hsa-miR-29a | 33.98 | 1.17 | NE |
| hsa-miR-331 | 34.19 | NE | |
| hsa-miR-16 | 34.22 | 0.00 | NE |
| hsa-miR-190b | 34.25 | NE | |
| mmu-miR-451 | 34.30 | NE | |
| hsa-miR-151–3p | 34.57 | NE | |
| hsa-miR-106b | 34.91 | NE | |
| hsa-miR-125b | 34.94 | 1.02 | NE |
| hsa-miR-30e-3p | 34.95 | 0.08 | NE |
| hsa-miR-28–3p | 34.97 | 0.10 | NE |
| hsa-let-7d | 34.98 | 0.22 | NE |
| hsa-miR-99a | 34.99 | 2.65 | NE |
| hsa-miR-93* | 34.99 | NE | |
| hsa-mir-26a | 34.99 | 0.48 | NE |
| hsa-miR-483–5p | 35.09 | 0.34 | NE |
| hsa-miR-345 | 35.17 | NE | |
| hsa-miR-210 | 35.20 | 0.90 | NE |
| hsa-miR-223* | 35.39 | 0.24 | NE |
| hsa-miR-126 | 35.54 | LE | |
| hsa-miR-374 | 35.66 | 0.30 | LE |
| hsa-miR-19a | 35.92 | LE | |
| hsa-miR-20b | 35.96 | LE | |
| hsa-miR-378 | 35.97 | 0.65 | LE |
| hsa-miR-145 | 35.98 | LE | |
| hsa-miR-146b | 35.99 | LE | |
| hsa-miR-133a | 35.99 | LE | |
| hsa-miR-19b-1* | 36.00 | 1.85 | LE |
| hsa-miR-186 | 36.94 | LE | |
| hsa-miR-195 | 36.95 | LE | |
| hsa-miR-505* | 36.97 | LE | |
| mmu-miR-93 | 37.00 | LE | |
| hsa-miR-532–5p | 37.00 | LE | |
| hsa-miR-374a* | 37.23 | 0.58 | LE |
Highly expressed (HE), normally expressed (NE), lowly expressed. The fold change values typed in bold fonts showed statistically significant expression differences respect to serum: SAM, two-class paired test; False Discovery rate <0.15.
Figure 1MiRNA expression in human vitreous humor. Expression levels of let-7b, miR-21, miR-26a, miR-146a, miR-199-3p, miR-210, miR-374a*, miR-532-5p in vitreous humor from patients with various ocular diseases. Values on the y-axis are reported as the mean, maximum and minimum values of the relative quantity of microRNAs (miRNAs) compared to serum. VMH=vitreous macular hole; VRD=vitreous retinal detachment; VUM=vitreous uveal melanoma; NRC=normal retinal cells; UMC=uveal melanoma cells. Wilcoxon rank-sum test, * p≤0.05; ** p≤0.01.
Figure 2Upregulation of miR-146a and miR-26a in vitreus humor from uveal melanoma samples. Box and Whisker plot of miR-146a (A) and miR-26a (B) expression in vitreus humor (VH) from three different pathological conditions: macular hole, retinal detachment, and uveal melanoma. Values on the y-axis are reported as the relative quantity of microRNAs (miRNAs) compared to serum. Thin line: miRNA expression on normal retinal cells; thick line: miRNA expression in formalin-fixed, paraffin-embedded tissues from uveal melanoma patients. Differential expression of miRNAs in patients with uveal melanoma compared to the other pathological classes was evaluated with the Wilcoxon rank-sum test (p<0.05).