| Literature DB >> 23427793 |
Suneil Malik1, Lei Fu, David James Juras, Mohamed Karmali, Betty Y L Wong, Agnes Gozdzik, David E C Cole.
Abstract
The vitamin D binding protein (DBP) is the major plasma carrier for vitamin D and its metabolites, but it is also an actin scavenger, and is the precursor to the immunomodulatory protein, Gc-MAF. Two missense variants of the DBP gene - rs7041 encoding Asp432Glu and rs4588 encoding Thr436Lys - change the amino acid sequence and alter the protein function. They are common enough to generate population-wide constitutive differences in vitamin D status, based on assay of the serum metabolite, 25-hydroxyvitamin D (25OHD). Whether these variants also influence the role of vitamin D in an immunologic milieu is not known. However, the issue is relevant, given the immunomodulatory effects of DBP and the role of protracted innate immune-related inflammation in response to tissue injury or repeated infection. Indeed, DBP and vitamin D may jointly or independently contribute to a variety of adverse health outcomes unrelated to classical notions of their function in bone and mineral metabolism. This review summarizes the reports to date of associations between DBP variants, and various chronic and infectious diseases. The available information leads us to conclude that DBP variants are a significant and common genetic factor in some common disorders, and therefore, are worthy of closer attention. In view of the heightened interest in vitamin D as a public health target, well-designed studies that look simultaneously at vitamin D and its carrier in relation to genotypes and adverse health outcome should be encouraged.Entities:
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Year: 2013 PMID: 23427793 PMCID: PMC3613945 DOI: 10.3109/10408363.2012.750262
Source DB: PubMed Journal: Crit Rev Clin Lab Sci ISSN: 1040-8363 Impact factor: 6.250
Figure 1.Genetic variants of the vitamin D-binding protein gene (GC). Shown in this schematic are the 13 exons (coding regions as green bars and untranslated sequences as pink boxes), separated by variable length introns (horizontal grey line, interrupted). Also shown are the DNase I hypersensitive sites (vertical red arrows). Extensively involved in control of gene expression, Site IV (HSIV), located in Intron I, is depicted in greater detail. Binding elements specific for Ccaat-enhancer-binding proteins (C/EBP, blue), GATA transcription factors (GATA, pink), hepatocyte nuclear factor 3-alpha (FoxA, lime) and nuclear factor-1 (NF-1, purple) are indicated. Besides the common missense SNPs – c.1296T > G specifying p.D432E, and c.1307C > A specifying p.T436K – there are a number of other well documented (black) and novel (orange) single-nucleotide variants scattered throughout the gene of relevance to future genetic association studies.
Figure 2.Common electrophoretic variants of the Gc protein (DBP). Shown at the top is the relative electrophoretic separation of the various Gc species, based on their isoelectric points (pI). The corresponding molecular structures are given below that. Only five residues of primary amino acid sequence (residues 432–436 = Asp–Ala–Thr–Pro–Thr = D–A–T–P–T) are depicted, along with their O-linked saccharides. Note that the D432E mutation results in a very small separation (ΔpI = 0.01), since the carboxyl side chains of the wild-type aspartate residue (in the Gc1F species) and the mutant glutamate residue (in Gc1S) have such similar dissociation constants. There is larger separation of the two Gc1 species if the negatively charged sialic acid residue (generating the anodal form, Gc1a) is removed, generating Gc1c, the cathodal form. Gc-MAF, shown at the bottom, arises as a result of sequential deglycosylation removing first the sialic acid and then the galactose residues. At the T436 position, the genetic variant Gc2 shows a more marked cathodal shift in electrophoretic migration due to replacement of the O-glycosylation site by a positively charged lysine residue (436 K).
Association between common genetic variants of the vitamin D binding protein gene (GC) and various diseases.
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Sample size ( | |||||||
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| Disease | Reference | Cases | Controls | Country | Ethnicity | GC polymorphisms studied | Findings |
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| Breast Cancer | Abbas et al. | 1402 | 2608 | Germany | Caucasian | Gc1F, Gc1S, Gc2 | Genotype Gc2-2 was associated with decreased risk of postmenopausal breast cancer, [OR = 0.72 (CI = 0.54–0.96, |
| Anderson et al. | 1560 | 1633 | Canada | Caucasian | rs7041, rs4588 | TT genotype of rs7041 was associated with breast cancer, OR = 1.23 (CI = 1.01–1.51, | |
| McCullough et al. | 500 | 500 | United States | 99% Caucasian | rs7041, rs4588 | NS | |
| Gastrointestinal Cancer (includes Colorectral Cancer) | Hibler et al. | 1439 | N/A | United Status | Caucasian | rs7041 and six other SNPs in | NS |
| Poynter et al. | 1806 | 2879 (siblings) | United States, Canada, Australia | 87% non-Hispanic White; remainder Black, Asian and Other | rs7041, rs4588 and other SNPs in the | NS | |
| Zhou et al. | 964 | 1187 | China | Han Chinese | D432E, T436K | Homozygous KK genotype of T436K had elevated risk for colorectal cancer in comparison to 436 T/T genotype, OR = 3.41 (CI = 1.85–6.57, | |
| Prostate Cancer | Ahn et al. | 749 | 781 | United States | Non-Hispanic White | rs7041, rs4588 and other SNPs in the | NS |
| Corder et al. | 181 | 181 | United States | 182 White, 180 Black | Gc1F, Gc1S, Gc2 | NS | |
| Dimopoulos et al. | 115 | 155 | Greece | Caucasian | Gc1F, Gc1S, Gc2 | Increased disease risk for carriers of Gc2 allele; RR = 1.81 ( | |
| Skin Cancer, Basal Cell Carcinoma (BCC) | Flohil et al. | 7983 | N/A | Netherlands | Caucasian | rs7041, rs4588 | Heterozygous Gc1F carriers were significantly more likely to develop a first BCC compared to non-carriers, HR = 1.40 (CI = 1.11–1.78). Homozygote Gc1S carriers aged less than 65 years old has significantly lower risk of BCC compared to non-carriers, HR = 0.53 (CI = 0.31–0.91). |
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| Asthma | Wjst et al. | 947 (201 families) | 191 | Germany and Sweden | Caucasian | rs7041, rs4588 and other SNPs in the | NS. Weak association with D432E (rs7041) and total serum IgE ( |
| Li et al. | 467 | 288 | China | Chinese Han | rs7041, rs4588 | Gc2 allele was associated with asthma susceptibility, OR = 1.35 (CI = 1.01–1.78, | |
| Chronic Obstructive Pulmonary Disease (COPD) | Horne et al. | 104 | 413 | Canada | Caucasian | Gc1F, Gc1S, Gc2 | Gc2 allele may confer disease protection; Highest disease risk in Gc1F-1F genotype (RR = 4.8), and lowest risk in Gc2-1F genotype (RR = 0.5) |
| Ito et al. | 103 | 88 | Japan | Japanese | T436K, D432E | Increased risk of COPD for Gc1F-1F genotype; significantly larger proportion of Gc1F homozygotes in patients (32%) compared to healthy smokers (17%) | |
| Janssens et al. | 262 | 152 | Belgium | Caucasian a | rs7041, rs4588 | Individuals with homozygous TT at rs7041 have increased risk for COPD; OR = 2.11 (CI = 1.2–3.71, | |
| Kasuga et al. | 532 (low lung function) | 537 (high lung function) | Canada | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Kueppers et al. | 114 | 114 | United Sates | Caucasian | Gc1F, Gc1S, Gc2 | Gc2-2 may offer a protective advantage; Gc2-2 genotype was underrepresented in the COPD group (1%) versus the control group (5%), | |
| Schellenberg et al. | 75 | 64 | Canada | Caucasian | Gc1F, Gc1S, Gc2 | Homozygous Gc2 appears protective against disease. OR for Gc2-1 = 1.01 (CI = 0.49–2.10) OR for Gc2-2 = 0.17 (CI = 0.03–0.83) | |
| Shen et al. | 100 | 100 | China | Chinese Han | Gc1F, Gc1S, Gc2 | Decreased COPD disease risk for Gc2. OR for Gc1F-1F = 3.08(CI = 1.498–6.347, | |
| Wood et al. | 611 (471 with AATD and 140 with COPD | 480 | United Kingdom | Caucasian | rs7041, rs4588 and other SNPs in | Gc2 decreased risk of COPD, OR = 0.79 (CI = 0.65–0.99, | |
| Diabetes (Type I) | Cooper et al. | 8517 | 104 381 and 1933 families | United Kingdom | Caucasian | rs7041, rs4588 | Association between rs4588 and type 1 diabetes was observed in the case/control dataset, OR = 0.95 (CI = 0.91–1.00, |
| Hodge et al. | 103 | N/A | United Sates | Caucasian | Gc1F, Gc1S, Gc2 | Excess of Gc2-1 and Gc1-1 phenotypes (0.05 > | |
| Pani et al. | 527 (152 families with at least one affected offspring) | N/A | Germany | Caucasian | Gc1F, Gc1S, Gc2; number of repeats for intron 8 [(TAAA)n] | NS | |
| Diabetes (Type II) (including insulin resistance and altered glucose tolerance) | Baier et al. | 578 | 595 | United States | Pima Indians | D432E, T436K | Gc genotypes differed in plasma glucose concentrations in response to oral glucose tolerance test, highest concentrations observed in Gc1F and lowest in Gc2 ( |
| Hirai et al. | 208 | 209 | Japan | Japanese | Gc1F, Gc1S, Gc2 | Reduced risk for individuals with Gc1F allele. Gc1F-1F genotype was less frequent in cases versus controls (11% versus 19%, | |
| Hirai et al. | N/A | 82 | Japan | Japanese | Gc1F, Gc1S, Gc2 | Fasting insulin concentrations differed in Gc alleles ( | |
| Iyengar et al. | N/A | 468 | United States | Anglos ( | Gc1F, Gc1S, Gc2 | Gc1F allele associated with highest levels of plasma glucose ( | |
| Klupa et al. | 396 (Type I, | 163 | United States | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Malecki et al. | 231 | 162 | Poland | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Szathmary | 144 | N/A | Canada | Dogrib Indians | Gc1F, Gc1S, Gc2 | Gc1F-1F had the lowest fasting glucose level. After adjustment for BMI, | |
| Ye et al. | 237 | 143 | France | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Endometriosis | Faserl et al. | 57 | 24 | United States | Caucasian | Gc1F, Gc1S, Gc2 |
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| Thyroid Autoimmune Disease | Kurylowicz et al. | 332 | 185 | Poland | Caucasians | D432Eand T436E; Variable tandem (TAAA)n- | Increased risk for carriers of K allele at T436K, OR = 1.5 (CI = 1.13–1.99, |
| Pani et al. | 187 nuclear families with an offspring affected by Graves ( | N/A | Germany and Italy | Caucasian | Gc1F, Gc1S, Gc2, Variable tandem (TAAA)n- | Association with intron 8(*8) polymorphisms in Graves Disease patients ( | |
| Ischemic Stroke | Wang et al. | 3550 | 6560 | United States, Europe, China | Varied by study; primarily Caucasians and Chinese | rs7041, rs4588 | NS |
| Inflammatory Bowel Diseases (IBD) | Eloranta et al. | 636 (232 with ulcerative colitis; 404 with crohn disease) | 248 | Switzerland | Caucasian | D432E, T436K | Homozygous 436KK genotype was more common in control group than in IBD patients ( |
| Liver Disease | Constans et al. | 17 (15 cirrhosis; 2 hepatitis) | 100 | France | Caucasian | Gc1F, Gc1S, Gc2 | Gc1 was overrepresented in the cases versus healthy controls. An unusual electrophoretic form of Gc1 was found in many of the cases (10 out of 17 cases), perhaps differentiated by the presence of two sialic acid residues. |
| Osteoporosis | Al-oanzi et al. | 56 | 114 | United Kingdom | Caucasian | Variable tandem (TAAA)n- | Allele *10 was associated with lower risk of osteoporosis, OR = 0.39 (CI = 0.25–0.64, |
| Eichner et al. | 258 | N/A | United States | Caucasian | Gc1F, Gc1S, Gc2 | No association between Gc alleles and BMD. Homozygous Gc1F phenotype was associated with higher bone mass density, but only 7 individuals with this phenotype. | |
| Ezura et al. | 384 | N/A | Japan | Japanese | rs7041, rs4588 and 12 other SNPs in the | Several SNPs were associated with bone mass density (BMD); D432E (rs7041) in conjunction with IVS1 + 827C > T showed the strongest relationship with BMD (r2 = 0.029, | |
| Fang et al. | 6181 | N/A | Netherlands | Caucasians | rs7041, rs4588 | Gc variants were not associated with fracture risk in entire study. In a subgroup of individuals with calcium intake <1.09 g/day, the hazard ratio for fracture risk for the Gc1S homozygote was 1.47 (CI = 1.06–2.05), compared to non-carriers. | |
| Lauridsen et al. | 595 | N/A | Denmark | Caucasian | Gc1F, Gc1S, Gc2 | Lowest fracture risk in Gc2-2 group (14%) compared to Gc1-2 (27%) and Gc1-1 (34%) ( | |
| Papiha et al. | 26 | 21 | United Kingdom | Caucasian | Gc1F, Gc1S, Gc2; Variable tandem (TAAA)n- | Intron 8* | |
| Sarcoidosis | Milman et al. | 44 | 44 | Denmark | Caucasian | Gc1F, Gc1S, Gc2 | NS |
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| Human Immunodeficiency Virus (HIV) | Alonso et al. | 318 (at risk or infected) | 187 | Spain | Caucasian | Gc1F, Gc1S, Gc2 | NS |
| Cleve et al. | 97 | 1523 | United Kingdom | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Eales et al. | 203 (at risk males) | 177 (50 homo-sexual and 122 hetero-sexual males) | United Kingdom | Caucasian | Gc1F, Gc1S, Gc2 | 30% of AIDS patients were homozygous for Gc1F compared to 0.8% of controls ( | |
| Pronk et al. | 447 (96 AIDS patients and 351 homosexual men | 86 | Netherlands | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Putkonen n et al. | 125 (85 AIDS patients and 40 couples with 1 infected partner) | 3394 | Sweden | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Rosberger et al. | 121 | 1011 | United States | Caucasians and African Americans | Gc1F, Gc1S, Gc2 | NS | |
| Rheumatoid Fever | Bahr et al. | 39 | 90 | Kuwait | Arabic | Gc1F, Gc1S, Gc2 | An association was observed between Gc2 allele with rheumatic fever ( |
| Tuberculosis (TB) | Bahr et al. | 41 | 90 | Kuwait | Arabic | Gc1F, Gc1S, Gc2 | No association with |
| Martineau et al. | 123 (United Kingdom); 130 (Brazil); 281 (South Africa) | 140 (United Kingdom); 78 (Brazil); 182 (South Africa) | United Kingdom | Varied based on study location | Gc1F, Gc1S, Gc2 | Associations between | |
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| Amyotrophic Lateral Sclerosis (ALS) | Palma et al. | 11 (7 ALS, 4 other muscular disorders) | 4 | Portugal | Caucasian | Gc1F, Gc1S, Gc2 | Gc2 may represent a disease risk, Gc2 was present in all familial ALS patients and 2 patients with other muscular diseases but in none of the healthy controls. |
| Multiple Sclerosis (MS) | Hollsberg et al. | 95 | 227 | Denmark | Caucasian | Gc1F, Gc1S, Gc2 | NS |
| Lindblom et al. | 88 | 3394 | Sweden | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Niino et al. | 107 | 109 | Japan | Japanese | D432E, T436K | NS | |
| Orton et al. | 1364 | 1661 (first degree relatives) | Canada | Caucasian | rs7041, rs4588 and 2 other SNPs in the | NS | |
| Simon et al. | 214 | 428 | United States | Various (Nurses Health Study) | rs7041, rs4588 | NS | |
| Steckley et al. | 236 sib pairs (1 affected, 1 not) | N/A | Canada | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Parkinson’s Disease | Suzuki et al. | 137 | N/A | Japan | Japanese | Gc1F, Gc1S, Gc2 | No association with |
| Schizophrenia | Beckman et al. | 47 | 2361 | Sweden | Caucasian | Gc1F, Gc1S, Gc2 | NS |
| Fananas et al. | 162 | 365 | Spain | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Lange, | 222 | 176 | Germany | Caucasian | Gc1F, Gc1S, Gc2 | Excess of Gc1-1 and a deficit of Gc2-1 and Gc2-2 ( | |
| Papiha et al. | 215 | 402 (203 family &199 unrelated) | United Kingdom | Caucasian | Gc1F, Gc1S, Gc2 | NS with | |
| Rudduck et al. | 152 | 3384 | Sweden | Caucasian | Gc1F, Gc1S, Gc2 | NS | |
| Saha and Tsoi, | 423 males | 595 | Singapore | Asian | Gc1F, Gc1S, Gc2 | Gc1S appears to offer protection against schizophrenia. Excess of Gc2 allele over Gc1 ( | |
Acronyms used in table: CI = Confidence Interval (95%); OR = Odds Ratio; RR = Relative Risk. Abbreviations used in table: NS = no significant association between polymorphisms studied and disease risk; AATD = α1-antitrypsin deficiency; HOMA (Homeostatis model assessment) is a measure used to quantify insulin resistance and beta cell function. In the cited study, HOMA(R) was calculated as [the fasting plasma glucose concentration (mg/dL)] × [fasting plasma insulin concentration (μU/mL)]/405 68.
aIn these studies, ethnicity was not clearly provided so they are assumed to be representative of the ethnic majority of the country where the study originates.
bSample was 99% Caucasian; the remainder of the sample was comprised of African-American, Asian, Hispanic and other ethnicities.
cFamily collections included samples from Ireland, Romania, Norway and families from the Human Biological Data Interchange.
dEthnicity included Gujarati Asians (United Kingdom), White, Black, Mixed Ethnicity (Brazil), Xhosa and Cape Colored (South Africa).