Literature DB >> 23424570

Phenyl acridine-9-carboxyl-ate.

Michał Wera1, Damian Trzybiński, Karol Krzymiński, Jerzy Błażejowski.   

Abstract

The acridine ring system and the benzene ring in the title compound, C(20)H(13)NO(2), are oriented at a dihedral angle of 6.4 (2)°. The carboxyl group is twisted at an angle of 83.6 (2)° relative to the acridine skeleton. The mol-ecules in the crystal are arranged in stacks along the b axis, with two of the acridine rings involved in multiple π-π inter-actions [centroid-centroid distances in the range 3.536 (2)-3.894 (2) Å]. Stacks arranged parallel are linked via C-H⋯π inter-actions, forming layers in the ac plane that are in contact with adjacent, inversely oriented layers via other C-H⋯π inter-actions, giving rise to double layers. The inversely oriented double layers inter-act dispersively. The acridine units are parallel within the parallel-oriented stacks, but inclined at an angle of 79.6 (2)° in the inversely oriented stacks.

Entities:  

Year:  2013        PMID: 23424570      PMCID: PMC3569824          DOI: 10.1107/S1600536813002055

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the applications of the title compound, see: Krzymiński et al. (2011 ▶); Natrajan et al. (2012 ▶); Trzybiński et al. (2010 ▶). For related structures, see: Trzybiński et al. (2013 ▶). For inter­molecular inter­actions, see: Hunter et al. (2001 ▶); Takahashi et al. (2001 ▶). For the synthesis, see: Sato (1996 ▶); Trzybiński et al. (2010 ▶).

Experimental

Crystal data

C20H13NO2 M = 299.31 Monoclinic, a = 17.094 (2) Å b = 5.4175 (7) Å c = 16.310 (2) Å β = 95.545 (11)° V = 1503.3 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.6 × 0.2 × 0.1 mm

Data collection

Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.354, T max = 0.986 9221 measured reflections 2651 independent reflections 1560 reflections with I > 2σ(I) R int = 0.068

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.203 S = 1.04 2651 reflections 209 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813002055/xu5671sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813002055/xu5671Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813002055/xu5671Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H13NO2F(000) = 624
Mr = 299.31Dx = 1.322 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2651 reflections
a = 17.094 (2) Åθ = 3.3–25.0°
b = 5.4175 (7) ŵ = 0.09 mm1
c = 16.310 (2) ÅT = 295 K
β = 95.545 (11)°Needle, pale-yellow
V = 1503.3 (3) Å30.6 × 0.2 × 0.1 mm
Z = 4
Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer2651 independent reflections
Radiation source: Enhanced (Mo) X-ray Source1560 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.068
Detector resolution: 10.4002 pixels mm-1θmax = 25.0°, θmin = 3.3°
ω scansh = −17→20
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −5→6
Tmin = 0.354, Tmax = 0.986l = −16→19
9221 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.203H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.1073P)2] where P = (Fo2 + 2Fc2)/3
2651 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.15883 (16)−0.0807 (5)0.28634 (16)0.0564 (7)
H10.2005−0.08420.25370.068*
C20.09977 (17)−0.2461 (5)0.27301 (17)0.0602 (8)
H20.1012−0.36230.23120.072*
C30.03597 (17)−0.2442 (5)0.32180 (18)0.0622 (8)
H3−0.0042−0.35920.31180.075*
C40.03260 (16)−0.0781 (5)0.38254 (17)0.0573 (7)
H4−0.0098−0.08010.41420.069*
C50.13817 (18)0.5964 (5)0.54258 (17)0.0621 (8)
H50.09450.59000.57240.075*
C60.1938 (2)0.7688 (5)0.56161 (18)0.0690 (8)
H60.18770.88070.60380.083*
C70.26132 (19)0.7811 (5)0.51795 (19)0.0673 (8)
H70.29960.90000.53180.081*
C80.27029 (17)0.6208 (5)0.45642 (17)0.0581 (7)
H80.31490.63120.42810.070*
C90.21784 (14)0.2683 (4)0.36980 (15)0.0473 (7)
N100.08713 (13)0.2595 (4)0.46103 (13)0.0548 (6)
C110.15783 (14)0.0982 (4)0.34973 (15)0.0451 (6)
C120.09280 (15)0.1001 (4)0.39897 (15)0.0489 (7)
C130.21349 (14)0.4373 (4)0.43382 (15)0.0479 (7)
C140.14481 (15)0.4254 (4)0.47830 (15)0.0506 (7)
C150.29032 (16)0.2631 (5)0.32487 (17)0.0552 (7)
O160.28060 (10)0.3857 (3)0.25400 (11)0.0581 (6)
O170.34884 (13)0.1610 (5)0.34906 (14)0.1104 (10)
C180.34637 (15)0.3952 (5)0.20676 (15)0.0486 (7)
C190.39837 (17)0.5859 (5)0.21985 (17)0.0603 (8)
H190.39190.70450.25990.072*
C200.46112 (17)0.5984 (6)0.1720 (2)0.0695 (9)
H200.49750.72590.18010.083*
C210.46958 (17)0.4238 (6)0.11312 (19)0.0695 (9)
H210.51190.43210.08140.083*
C220.41592 (19)0.2364 (6)0.10059 (19)0.0699 (9)
H220.42160.11930.05990.084*
C230.35334 (17)0.2201 (5)0.14809 (18)0.0613 (8)
H230.31690.09270.14010.074*
U11U22U33U12U13U23
C10.0505 (18)0.0670 (17)0.0530 (16)0.0065 (13)0.0117 (13)0.0049 (14)
C20.060 (2)0.0634 (17)0.0577 (17)0.0004 (14)0.0095 (14)−0.0044 (14)
C30.0557 (19)0.0651 (17)0.0657 (19)−0.0119 (13)0.0046 (15)0.0053 (16)
C40.0440 (17)0.0697 (17)0.0600 (17)−0.0022 (13)0.0151 (13)0.0072 (15)
C50.065 (2)0.0662 (17)0.0579 (17)0.0055 (15)0.0196 (14)−0.0019 (15)
C60.083 (2)0.0668 (18)0.0567 (18)0.0026 (16)0.0038 (16)−0.0074 (15)
C70.071 (2)0.0649 (18)0.0643 (19)−0.0087 (15)−0.0035 (16)0.0059 (16)
C80.0508 (18)0.0667 (17)0.0565 (17)−0.0039 (13)0.0045 (13)0.0079 (14)
C90.0397 (15)0.0578 (15)0.0460 (14)0.0069 (11)0.0123 (11)0.0092 (12)
N100.0488 (15)0.0625 (13)0.0561 (14)−0.0013 (11)0.0202 (11)0.0040 (11)
C110.0348 (14)0.0565 (14)0.0453 (14)0.0046 (11)0.0111 (11)0.0059 (13)
C120.0427 (16)0.0568 (15)0.0479 (15)0.0019 (12)0.0081 (12)0.0084 (13)
C130.0415 (16)0.0553 (15)0.0477 (15)0.0028 (11)0.0077 (12)0.0083 (12)
C140.0478 (17)0.0557 (15)0.0496 (15)0.0049 (12)0.0108 (12)0.0071 (13)
C150.0421 (17)0.0687 (17)0.0564 (17)0.0071 (13)0.0132 (13)0.0141 (14)
O160.0396 (11)0.0788 (12)0.0590 (11)0.0076 (8)0.0204 (8)0.0163 (10)
O170.0564 (16)0.182 (2)0.0990 (18)0.0486 (15)0.0378 (13)0.0715 (17)
C180.0376 (15)0.0609 (15)0.0493 (15)0.0022 (12)0.0140 (11)0.0099 (13)
C190.0558 (18)0.0657 (17)0.0615 (17)−0.0029 (14)0.0169 (14)−0.0034 (14)
C200.051 (2)0.0773 (19)0.082 (2)−0.0141 (14)0.0167 (16)0.0079 (18)
C210.0485 (19)0.096 (2)0.0667 (19)0.0011 (16)0.0220 (15)0.0150 (18)
C220.071 (2)0.080 (2)0.0629 (19)0.0036 (16)0.0253 (16)−0.0085 (16)
C230.0560 (19)0.0645 (17)0.0662 (18)−0.0090 (13)0.0193 (14)−0.0021 (15)
C1—C21.352 (4)C9—C151.500 (4)
C1—C111.418 (3)N10—C121.341 (3)
C1—H10.9300N10—C141.344 (3)
C2—C31.411 (4)C11—C121.433 (3)
C2—H20.9300C13—C141.440 (3)
C3—C41.343 (4)C15—O171.177 (3)
C3—H30.9300C15—O161.329 (3)
C4—C121.418 (4)O16—C181.424 (3)
C4—H40.9300C18—C231.361 (4)
C5—C61.347 (4)C18—C191.366 (4)
C5—C141.412 (3)C19—C201.387 (4)
C5—H50.9300C19—H190.9300
C6—C71.415 (4)C20—C211.366 (4)
C6—H60.9300C20—H200.9300
C7—C81.347 (4)C21—C221.370 (4)
C7—H70.9300C21—H210.9300
C8—C131.413 (4)C22—C231.383 (4)
C8—H80.9300C22—H220.9300
C9—C111.394 (3)C23—H230.9300
C9—C131.396 (3)
C2—C1—C11120.6 (3)N10—C12—C4118.5 (2)
C2—C1—H1119.7N10—C12—C11123.0 (2)
C11—C1—H1119.7C4—C12—C11118.5 (2)
C1—C2—C3120.7 (3)C9—C13—C8124.9 (2)
C1—C2—H2119.6C9—C13—C14116.9 (2)
C3—C2—H2119.6C8—C13—C14118.2 (2)
C4—C3—C2120.8 (3)N10—C14—C5119.0 (2)
C4—C3—H3119.6N10—C14—C13122.8 (2)
C2—C3—H3119.6C5—C14—C13118.2 (2)
C3—C4—C12120.9 (3)O17—C15—O16123.8 (2)
C3—C4—H4119.6O17—C15—C9124.1 (2)
C12—C4—H4119.6O16—C15—C9112.1 (2)
C6—C5—C14121.4 (3)C15—O16—C18116.72 (19)
C6—C5—H5119.3C23—C18—C19122.5 (2)
C14—C5—H5119.3C23—C18—O16118.9 (2)
C5—C6—C7120.5 (3)C19—C18—O16118.6 (2)
C5—C6—H6119.7C18—C19—C20118.4 (3)
C7—C6—H6119.7C18—C19—H19120.8
C8—C7—C6120.1 (3)C20—C19—H19120.8
C8—C7—H7119.9C21—C20—C19120.1 (3)
C6—C7—H7119.9C21—C20—H20119.9
C7—C8—C13121.5 (3)C19—C20—H20119.9
C7—C8—H8119.2C20—C21—C22120.2 (3)
C13—C8—H8119.2C20—C21—H21119.9
C11—C9—C13121.2 (2)C22—C21—H21119.9
C11—C9—C15119.8 (2)C21—C22—C23120.4 (3)
C13—C9—C15118.9 (2)C21—C22—H22119.8
C12—N10—C14118.9 (2)C23—C22—H22119.8
C9—C11—C1124.2 (2)C18—C23—C22118.3 (3)
C9—C11—C12117.2 (2)C18—C23—H23120.8
C1—C11—C12118.6 (2)C22—C23—H23120.8
C11—C1—C2—C30.0 (4)C7—C8—C13—C140.2 (4)
C1—C2—C3—C40.0 (4)C12—N10—C14—C5178.8 (2)
C2—C3—C4—C120.3 (4)C12—N10—C14—C13−1.1 (4)
C14—C5—C6—C7−0.8 (4)C6—C5—C14—N10−179.0 (3)
C5—C6—C7—C80.4 (4)C6—C5—C14—C130.8 (4)
C6—C7—C8—C13−0.2 (4)C9—C13—C14—N100.8 (4)
C13—C9—C11—C1−179.1 (2)C8—C13—C14—N10179.3 (2)
C15—C9—C11—C1−2.1 (4)C9—C13—C14—C5−179.1 (2)
C13—C9—C11—C12−1.7 (3)C8—C13—C14—C5−0.5 (3)
C15—C9—C11—C12175.4 (2)C11—C9—C15—O17−95.7 (4)
C2—C1—C11—C9177.2 (2)C13—C9—C15—O1781.4 (4)
C2—C1—C11—C12−0.2 (4)C11—C9—C15—O1683.7 (3)
C14—N10—C12—C4178.5 (2)C13—C9—C15—O16−99.2 (3)
C14—N10—C12—C11−0.1 (3)O17—C15—O16—C18−1.4 (4)
C3—C4—C12—N10−179.1 (2)C9—C15—O16—C18179.2 (2)
C3—C4—C12—C11−0.5 (4)C15—O16—C18—C2392.5 (3)
C9—C11—C12—N101.4 (4)C15—O16—C18—C19−90.1 (3)
C1—C11—C12—N10179.0 (2)C23—C18—C19—C20−0.9 (4)
C9—C11—C12—C4−177.1 (2)O16—C18—C19—C20−178.2 (2)
C1—C11—C12—C40.4 (3)C18—C19—C20—C210.5 (4)
C11—C9—C13—C8−177.8 (2)C19—C20—C21—C220.4 (4)
C15—C9—C13—C85.1 (4)C20—C21—C22—C23−0.9 (5)
C11—C9—C13—C140.6 (3)C19—C18—C23—C220.5 (4)
C15—C9—C13—C14−176.4 (2)O16—C18—C23—C22177.7 (2)
C7—C8—C13—C9178.6 (2)C21—C22—C23—C180.4 (4)
D—H···AD—HH···AD···AD—H···A
C3—H3···Cg2i0.932.983.712 (3)137
C7—H7···Cg4ii0.932.843.646 (3)145
IJCgI···CgJDihedral angleCgI_PerpCgI_Offset
12iii3.894 (2)1.7 (2)3.451 (1)1.804 (1)
13iv3.893 (2)1.4 (2)3.454 (1)1.796 (1)
21iv3.894 (2)1.7 (2)3.498 (2)1.711 (2)
23iv3.536 (2)1.1 (2)3.482 (2)0.616 (2)
31iii3.893 (2)1.4 (2)3.496 (2)1.713 (2)
32iii3.536 (2)1.1 (2)3.481 (2)0.621 (2)
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 and Cg4 denote the centroids of the C1–C4/C11/C12 and C18–C23 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯Cg2i 0.932.983.712 (3)137
C7—H7⋯Cg4ii 0.932.843.646 (3)145

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Chemiluminescence from alkoxy-substituted acridinium dimethylphenyl ester labels.

Authors:  Anand Natrajan; David Sharpe; David Wen
Journal:  Org Biomol Chem       Date:  2012-03-23       Impact factor: 3.876

3.  Chemiluminogenic features of 10-methyl-9-(phenoxycarbonyl)acridinium trifluoromethanesulfonates alkyl substituted at the benzene ring in aqueous media.

Authors:  Karol Krzymiński; Agnieszka Ożóg; Piotr Malecha; Alexander D Roshal; Agnieszka Wróblewska; Beata Zadykowicz; Jerzy Błażejowski
Journal:  J Org Chem       Date:  2011-01-19       Impact factor: 4.354

4.  10-Methyl-9-phenoxy-carbonyl-acridinium trifluoro-methane-sulfonate monohydrate.

Authors:  Damian Trzybiński; Karol Krzymiński; Artur Sikorski; Jerzy Błażejowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

5.  2,6-Dimethyl-phenyl acridine-9-carboxyl-ate.

Authors:  Damian Trzybiński; Michał Wera; Karol Krzymiński; Jerzy Błażejowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-04

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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