| Literature DB >> 23424559 |
Narsimha Reddy Penthala1, Peter A Crooks.
Abstract
IN THE TITLE COMPOUND [SYSTEMATIC NAME: rac-1-benzyl-5-bromo-3-hy-droxy-3-(2-imino-3-methyl-5-oxoimidazolidin-4-yl)-2,3-dihydro-1H-indol-2-one ethanol monosolvate], C(19)H(17)BrN(4)O(3)·C(2)H(5)OH, which crystallized as a racemate (RR and SS), the isatin ring is almost planar, with an r.m.s. deviations from the mean plane of 0.0276 (14) Å. The phenyl ring of the benzyl group makes a dihedral angle with the mean plane of the isatin ring of 87.40 (5)° and the dihedral angle between the imidazole and isatin rings is 58.56 (7)°. In the crystal, mol-ecules are linked into two-dimensional pleated-sheet networks in the ac plane formed by O-H⋯O, N-H⋯O and O-H⋯N hydrogen bonds; within these sheets there are R(4) (4)(10) rings that involve three mol-ecules of the title compound and a single ethanol solvent mol-ecule. In addition, there are π-π inter-actions between inversion-related benzyl groups, with an inter-planar spacing of 3.444 (3) Å.Entities:
Year: 2013 PMID: 23424559 PMCID: PMC3569813 DOI: 10.1107/S160053681300038X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H17BrN4O3·C2H6O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 51652 reflections |
| θ = 1.0–27.5° | |
| µ = 2.02 mm−1 | |
| β = 99.54 (3)° | Block, colourless |
| 0.20 × 0.15 × 0.10 mm | |
| Nonius KappaCCD diffractometer | 4752 independent reflections |
| Radiation source: fine-focus sealed tube | 4147 reflections with |
| Graphite monochromator | |
| Detector resolution: 9.1 pixels mm-1 | θmax = 27.5°, θmin = 1.7° |
| ω scans at fixed χ = 55° | |
| Absorption correction: multi-scan [ | |
| 41507 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4752 reflections | (Δ/σ)max = 0.002 |
| 282 parameters | Δρmax = 1.19 e Å−3 |
| 3 restraints | Δρmin = −0.45 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.49690 (3) | 0.374439 (8) | 0.816959 (17) | 0.02004 (7) | |
| O1 | 0.41024 (17) | 0.35297 (6) | 0.10785 (12) | 0.0171 (3) | |
| C1 | 0.4044 (2) | 0.36264 (7) | 0.21623 (17) | 0.0130 (3) | |
| N2 | 0.35261 (19) | 0.41049 (6) | 0.26345 (14) | 0.0131 (3) | |
| C3 | 0.3743 (2) | 0.40838 (7) | 0.39354 (17) | 0.0127 (3) | |
| C4 | 0.3378 (2) | 0.44865 (8) | 0.47375 (18) | 0.0152 (4) | |
| H4 | 0.2896 | 0.4825 | 0.4435 | 0.018* | |
| C5 | 0.3745 (2) | 0.43786 (8) | 0.60104 (17) | 0.0160 (4) | |
| H5 | 0.3503 | 0.4646 | 0.6587 | 0.019* | |
| C6 | 0.4460 (2) | 0.38823 (8) | 0.64338 (16) | 0.0140 (4) | |
| C7 | 0.4822 (2) | 0.34757 (7) | 0.56274 (16) | 0.0129 (3) | |
| H7 | 0.5311 | 0.3138 | 0.5931 | 0.015* | |
| C8 | 0.4445 (2) | 0.35808 (7) | 0.43654 (17) | 0.0121 (3) | |
| O9 | 0.64140 (16) | 0.31074 (6) | 0.31688 (12) | 0.0163 (3) | |
| H9 | 0.7024 | 0.3118 | 0.3877 | 0.024* | |
| C9 | 0.4680 (2) | 0.32370 (7) | 0.32616 (16) | 0.0124 (3) | |
| C10 | 0.3592 (2) | 0.27084 (7) | 0.31485 (16) | 0.0123 (3) | |
| H10 | 0.3696 | 0.2511 | 0.2364 | 0.015* | |
| O11 | 0.07782 (17) | 0.31156 (5) | 0.24552 (12) | 0.0169 (3) | |
| C11 | 0.1692 (2) | 0.28271 (7) | 0.32180 (16) | 0.0127 (3) | |
| N12 | 0.12428 (19) | 0.25919 (6) | 0.42372 (14) | 0.0137 (3) | |
| N13 | 0.2659 (2) | 0.20205 (7) | 0.57992 (15) | 0.0166 (3) | |
| H13A | 0.356 (3) | 0.1946 (9) | 0.625 (2) | 0.020* | |
| H13B | 0.175 (3) | 0.2005 (10) | 0.608 (2) | 0.020* | |
| C13 | 0.2659 (2) | 0.23119 (7) | 0.47904 (16) | 0.0128 (3) | |
| N14 | 0.40463 (19) | 0.23525 (6) | 0.42122 (14) | 0.0121 (3) | |
| C14 | 0.5592 (2) | 0.20123 (8) | 0.44579 (18) | 0.0177 (4) | |
| H14A | 0.6453 | 0.2187 | 0.5088 | 0.026* | |
| H14B | 0.6073 | 0.1967 | 0.3692 | 0.026* | |
| H14C | 0.5288 | 0.1655 | 0.4758 | 0.026* | |
| C15 | 0.3028 (2) | 0.45903 (8) | 0.18962 (17) | 0.0156 (4) | |
| H15A | 0.3328 | 0.4536 | 0.1060 | 0.019* | |
| H15B | 0.3718 | 0.4902 | 0.2282 | 0.019* | |
| C16 | 0.1127 (2) | 0.47366 (8) | 0.17564 (16) | 0.0146 (4) | |
| C17 | −0.0132 (3) | 0.43353 (8) | 0.17080 (19) | 0.0197 (4) | |
| H17 | 0.0203 | 0.3965 | 0.1834 | 0.024* | |
| C18 | −0.1880 (3) | 0.44717 (8) | 0.14763 (19) | 0.0204 (4) | |
| H18 | −0.2733 | 0.4195 | 0.1438 | 0.024* | |
| C19 | −0.2373 (3) | 0.50119 (8) | 0.13010 (18) | 0.0187 (4) | |
| H19 | −0.3564 | 0.5106 | 0.1133 | 0.022* | |
| C20 | −0.1119 (3) | 0.54152 (8) | 0.13722 (19) | 0.0198 (4) | |
| H20 | −0.1454 | 0.5786 | 0.1266 | 0.024* | |
| C21 | 0.0624 (3) | 0.52780 (8) | 0.15986 (18) | 0.0181 (4) | |
| H21 | 0.1476 | 0.5556 | 0.1646 | 0.022* | |
| O1S | −0.13483 (17) | 0.30418 (6) | 0.53172 (13) | 0.0191 (3) | |
| H1S | −0.0600 | 0.2885 | 0.4975 | 0.029* | |
| C1S | −0.0616 (3) | 0.35257 (9) | 0.5930 (2) | 0.0249 (4) | |
| H1S1 | 0.0641 | 0.3470 | 0.6199 | 0.030* | |
| H1S2 | −0.1143 | 0.3588 | 0.6680 | 0.030* | |
| C2S | −0.0892 (3) | 0.40229 (9) | 0.5114 (2) | 0.0300 (5) | |
| H2S1 | −0.0366 | 0.3965 | 0.4372 | 0.045* | |
| H2S2 | −0.0355 | 0.4339 | 0.5570 | 0.045* | |
| H2S3 | −0.2135 | 0.4088 | 0.4869 | 0.045* |
| Br1 | 0.02698 (11) | 0.02127 (11) | 0.01143 (10) | 0.00486 (8) | 0.00183 (7) | −0.00050 (7) |
| O1 | 0.0183 (7) | 0.0219 (7) | 0.0113 (6) | −0.0017 (6) | 0.0030 (5) | 0.0000 (5) |
| C1 | 0.0084 (8) | 0.0169 (9) | 0.0139 (9) | −0.0023 (6) | 0.0026 (6) | 0.0011 (7) |
| N2 | 0.0139 (7) | 0.0146 (7) | 0.0108 (7) | −0.0001 (6) | 0.0016 (6) | 0.0019 (6) |
| C3 | 0.0094 (8) | 0.0160 (9) | 0.0125 (8) | −0.0025 (7) | 0.0010 (6) | 0.0011 (7) |
| C4 | 0.0140 (8) | 0.0131 (8) | 0.0180 (9) | 0.0005 (7) | 0.0014 (7) | 0.0005 (7) |
| C5 | 0.0157 (9) | 0.0167 (9) | 0.0157 (9) | −0.0001 (7) | 0.0029 (7) | −0.0033 (7) |
| C6 | 0.0130 (8) | 0.0191 (9) | 0.0094 (8) | −0.0015 (7) | 0.0005 (7) | −0.0006 (7) |
| C7 | 0.0105 (8) | 0.0151 (9) | 0.0129 (8) | 0.0000 (7) | 0.0016 (7) | 0.0012 (7) |
| C8 | 0.0081 (8) | 0.0144 (8) | 0.0140 (9) | −0.0019 (6) | 0.0028 (6) | −0.0006 (7) |
| O9 | 0.0104 (6) | 0.0260 (7) | 0.0129 (6) | 0.0032 (5) | 0.0033 (5) | −0.0005 (5) |
| C9 | 0.0103 (8) | 0.0157 (9) | 0.0113 (8) | 0.0014 (7) | 0.0019 (6) | 0.0010 (7) |
| C10 | 0.0129 (8) | 0.0137 (8) | 0.0102 (8) | 0.0018 (7) | 0.0016 (6) | 0.0004 (7) |
| O11 | 0.0148 (6) | 0.0168 (7) | 0.0174 (7) | −0.0004 (5) | −0.0025 (5) | 0.0033 (5) |
| C11 | 0.0111 (8) | 0.0121 (8) | 0.0138 (9) | −0.0012 (6) | −0.0006 (7) | −0.0023 (7) |
| N12 | 0.0112 (7) | 0.0151 (7) | 0.0144 (7) | 0.0011 (6) | 0.0013 (6) | 0.0023 (6) |
| N13 | 0.0123 (8) | 0.0232 (9) | 0.0146 (8) | 0.0022 (7) | 0.0033 (6) | 0.0049 (6) |
| C13 | 0.0123 (8) | 0.0130 (8) | 0.0128 (8) | −0.0010 (7) | 0.0014 (7) | −0.0015 (7) |
| N14 | 0.0117 (7) | 0.0134 (7) | 0.0116 (7) | 0.0031 (6) | 0.0031 (6) | 0.0025 (6) |
| C14 | 0.0159 (9) | 0.0185 (9) | 0.0197 (10) | 0.0076 (7) | 0.0063 (7) | 0.0034 (7) |
| C15 | 0.0160 (9) | 0.0150 (9) | 0.0155 (9) | −0.0009 (7) | 0.0019 (7) | 0.0044 (7) |
| C16 | 0.0168 (9) | 0.0173 (9) | 0.0095 (8) | 0.0000 (7) | 0.0017 (7) | 0.0019 (7) |
| C17 | 0.0192 (10) | 0.0152 (9) | 0.0243 (10) | 0.0004 (7) | 0.0026 (8) | 0.0040 (8) |
| C18 | 0.0175 (9) | 0.0189 (10) | 0.0254 (10) | −0.0036 (8) | 0.0051 (8) | 0.0021 (8) |
| C19 | 0.0179 (9) | 0.0234 (10) | 0.0152 (9) | 0.0041 (8) | 0.0044 (7) | 0.0023 (8) |
| C20 | 0.0232 (10) | 0.0153 (9) | 0.0214 (10) | 0.0034 (8) | 0.0055 (8) | 0.0009 (7) |
| C21 | 0.0201 (9) | 0.0164 (9) | 0.0182 (9) | −0.0028 (8) | 0.0044 (7) | −0.0006 (7) |
| O1S | 0.0127 (6) | 0.0229 (7) | 0.0217 (7) | 0.0024 (5) | 0.0033 (5) | −0.0021 (6) |
| C1S | 0.0218 (10) | 0.0275 (11) | 0.0240 (11) | 0.0005 (9) | −0.0002 (8) | −0.0052 (9) |
| C2S | 0.0239 (11) | 0.0286 (12) | 0.0376 (13) | −0.0076 (9) | 0.0049 (10) | 0.0006 (10) |
| Br1—C6 | 1.9042 (18) | C13—N14 | 1.349 (2) |
| O1—C1 | 1.217 (2) | N14—C14 | 1.460 (2) |
| C1—N2 | 1.372 (2) | C14—H14A | 0.9800 |
| C1—C9 | 1.552 (2) | C14—H14B | 0.9800 |
| N2—C3 | 1.406 (2) | C14—H14C | 0.9800 |
| N2—C15 | 1.456 (2) | C15—C16 | 1.516 (3) |
| C3—C4 | 1.383 (3) | C15—H15A | 0.9900 |
| C3—C8 | 1.401 (3) | C15—H15B | 0.9900 |
| C4—C5 | 1.399 (3) | C16—C17 | 1.389 (3) |
| C4—H4 | 0.9500 | C16—C21 | 1.389 (3) |
| C5—C6 | 1.388 (3) | C17—C18 | 1.392 (3) |
| C5—H5 | 0.9500 | C17—H17 | 0.9500 |
| C6—C7 | 1.392 (3) | C18—C19 | 1.386 (3) |
| C7—C8 | 1.387 (3) | C18—H18 | 0.9500 |
| C7—H7 | 0.9500 | C19—C20 | 1.388 (3) |
| C8—C9 | 1.509 (2) | C19—H19 | 0.9500 |
| O9—C9 | 1.416 (2) | C20—C21 | 1.389 (3) |
| O9—H9 | 0.8400 | C20—H20 | 0.9500 |
| C9—C10 | 1.546 (2) | C21—H21 | 0.9500 |
| C10—N14 | 1.451 (2) | O1S—C1S | 1.436 (3) |
| C10—C11 | 1.532 (2) | O1S—H1S | 0.8400 |
| C10—H10 | 1.0000 | C1S—C2S | 1.506 (3) |
| O11—C11 | 1.230 (2) | C1S—H1S1 | 0.9900 |
| C11—N12 | 1.353 (2) | C1S—H1S2 | 0.9900 |
| N12—C13 | 1.359 (2) | C2S—H2S1 | 0.9800 |
| N13—C13 | 1.315 (2) | C2S—H2S2 | 0.9800 |
| N13—H13A | 0.81 (2) | C2S—H2S3 | 0.9800 |
| N13—H13B | 0.82 (2) | ||
| O1—C1—N2 | 126.51 (17) | C13—N14—C10 | 108.09 (14) |
| O1—C1—C9 | 125.11 (17) | C13—N14—C14 | 125.49 (15) |
| N2—C1—C9 | 108.24 (15) | C10—N14—C14 | 125.31 (15) |
| C1—N2—C3 | 110.84 (15) | N14—C14—H14A | 109.5 |
| C1—N2—C15 | 124.14 (16) | N14—C14—H14B | 109.5 |
| C3—N2—C15 | 124.60 (15) | H14A—C14—H14B | 109.5 |
| C4—C3—C8 | 121.89 (17) | N14—C14—H14C | 109.5 |
| C4—C3—N2 | 127.78 (17) | H14A—C14—H14C | 109.5 |
| C8—C3—N2 | 110.31 (16) | H14B—C14—H14C | 109.5 |
| C3—C4—C5 | 117.77 (17) | N2—C15—C16 | 114.75 (15) |
| C3—C4—H4 | 121.1 | N2—C15—H15A | 108.6 |
| C5—C4—H4 | 121.1 | C16—C15—H15A | 108.6 |
| C6—C5—C4 | 120.19 (17) | N2—C15—H15B | 108.6 |
| C6—C5—H5 | 119.9 | C16—C15—H15B | 108.6 |
| C4—C5—H5 | 119.9 | H15A—C15—H15B | 107.6 |
| C5—C6—C7 | 122.12 (17) | C17—C16—C21 | 119.26 (18) |
| C5—C6—Br1 | 119.66 (14) | C17—C16—C15 | 121.06 (17) |
| C7—C6—Br1 | 118.22 (14) | C21—C16—C15 | 119.56 (17) |
| C8—C7—C6 | 117.69 (17) | C16—C17—C18 | 120.50 (18) |
| C8—C7—H7 | 121.2 | C16—C17—H17 | 119.7 |
| C6—C7—H7 | 121.2 | C18—C17—H17 | 119.7 |
| C7—C8—C3 | 120.34 (17) | C19—C18—C17 | 119.93 (18) |
| C7—C8—C9 | 131.13 (17) | C19—C18—H18 | 120.0 |
| C3—C8—C9 | 108.53 (15) | C17—C18—H18 | 120.0 |
| C9—O9—H9 | 109.5 | C18—C19—C20 | 119.74 (18) |
| O9—C9—C8 | 115.38 (15) | C18—C19—H19 | 120.1 |
| O9—C9—C10 | 109.18 (14) | C20—C19—H19 | 120.1 |
| C8—C9—C10 | 113.26 (14) | C19—C20—C21 | 120.23 (18) |
| O9—C9—C1 | 105.76 (14) | C19—C20—H20 | 119.9 |
| C8—C9—C1 | 102.06 (14) | C21—C20—H20 | 119.9 |
| C10—C9—C1 | 110.69 (14) | C20—C21—C16 | 120.32 (18) |
| N14—C10—C11 | 100.72 (14) | C20—C21—H21 | 119.8 |
| N14—C10—C9 | 112.50 (14) | C16—C21—H21 | 119.8 |
| C11—C10—C9 | 111.34 (14) | C1S—O1S—H1S | 109.5 |
| N14—C10—H10 | 110.6 | O1S—C1S—C2S | 112.79 (18) |
| C11—C10—H10 | 110.6 | O1S—C1S—H1S1 | 109.0 |
| C9—C10—H10 | 110.6 | C2S—C1S—H1S1 | 109.0 |
| O11—C11—N12 | 127.07 (17) | O1S—C1S—H1S2 | 109.0 |
| O11—C11—C10 | 122.53 (16) | C2S—C1S—H1S2 | 109.0 |
| N12—C11—C10 | 110.35 (15) | H1S1—C1S—H1S2 | 107.8 |
| C11—N12—C13 | 106.12 (15) | C1S—C2S—H2S1 | 109.5 |
| C13—N13—H13A | 121.0 (16) | C1S—C2S—H2S2 | 109.5 |
| C13—N13—H13B | 117.3 (16) | H2S1—C2S—H2S2 | 109.5 |
| H13A—N13—H13B | 118 (2) | C1S—C2S—H2S3 | 109.5 |
| N13—C13—N14 | 123.05 (17) | H2S1—C2S—H2S3 | 109.5 |
| N13—C13—N12 | 122.36 (16) | H2S2—C2S—H2S3 | 109.5 |
| N14—C13—N12 | 114.59 (16) | ||
| O1—C1—N2—C3 | −175.80 (17) | C8—C9—C10—N14 | −61.17 (19) |
| C9—C1—N2—C3 | 0.11 (19) | C1—C9—C10—N14 | −175.10 (14) |
| O1—C1—N2—C15 | −2.9 (3) | O9—C9—C10—C11 | −178.91 (14) |
| C9—C1—N2—C15 | 172.95 (15) | C8—C9—C10—C11 | 51.04 (19) |
| C1—N2—C3—C4 | 179.53 (18) | C1—C9—C10—C11 | −62.89 (18) |
| C15—N2—C3—C4 | 6.7 (3) | N14—C10—C11—O11 | −178.92 (16) |
| C1—N2—C3—C8 | 0.7 (2) | C9—C10—C11—O11 | 61.6 (2) |
| C15—N2—C3—C8 | −172.11 (16) | N14—C10—C11—N12 | 3.60 (19) |
| C8—C3—C4—C5 | 0.4 (3) | C9—C10—C11—N12 | −115.88 (16) |
| N2—C3—C4—C5 | −178.32 (17) | O11—C11—N12—C13 | 179.74 (18) |
| C3—C4—C5—C6 | 0.4 (3) | C10—C11—N12—C13 | −2.93 (19) |
| C4—C5—C6—C7 | −0.6 (3) | C11—N12—C13—N13 | −178.18 (17) |
| C4—C5—C6—Br1 | 179.46 (14) | C11—N12—C13—N14 | 1.0 (2) |
| C5—C6—C7—C8 | 0.0 (3) | N13—C13—N14—C10 | −179.41 (17) |
| Br1—C6—C7—C8 | 179.97 (13) | N12—C13—N14—C10 | 1.4 (2) |
| C6—C7—C8—C3 | 0.7 (3) | N13—C13—N14—C14 | 12.2 (3) |
| C6—C7—C8—C9 | 179.66 (17) | N12—C13—N14—C14 | −167.02 (17) |
| C4—C3—C8—C7 | −1.0 (3) | C11—C10—N14—C13 | −2.85 (18) |
| N2—C3—C8—C7 | 177.94 (15) | C9—C10—N14—C13 | 115.79 (16) |
| C4—C3—C8—C9 | 179.88 (16) | C11—C10—N14—C14 | 165.59 (16) |
| N2—C3—C8—C9 | −1.21 (19) | C9—C10—N14—C14 | −75.8 (2) |
| C7—C8—C9—O9 | −63.7 (3) | C1—N2—C15—C16 | 111.7 (2) |
| C3—C8—C9—O9 | 115.31 (17) | C3—N2—C15—C16 | −76.5 (2) |
| C7—C8—C9—C10 | 63.1 (2) | N2—C15—C16—C17 | −33.1 (3) |
| C3—C8—C9—C10 | −117.84 (16) | N2—C15—C16—C21 | 150.87 (17) |
| C7—C8—C9—C1 | −177.84 (18) | C21—C16—C17—C18 | 1.4 (3) |
| C3—C8—C9—C1 | 1.18 (18) | C15—C16—C17—C18 | −174.63 (18) |
| O1—C1—C9—O9 | 54.1 (2) | C16—C17—C18—C19 | −0.5 (3) |
| N2—C1—C9—O9 | −121.83 (15) | C17—C18—C19—C20 | −0.8 (3) |
| O1—C1—C9—C8 | 175.19 (17) | C18—C19—C20—C21 | 1.0 (3) |
| N2—C1—C9—C8 | −0.78 (18) | C19—C20—C21—C16 | 0.0 (3) |
| O1—C1—C9—C10 | −64.0 (2) | C17—C16—C21—C20 | −1.2 (3) |
| N2—C1—C9—C10 | 120.05 (16) | C15—C16—C21—C20 | 174.94 (17) |
| O9—C9—C10—N14 | 68.89 (18) |
| H··· | ||||
| O9—H9···O1 | 0.84 | 1.87 | 2.694 (2) | 169 |
| N13—H13 | 0.81 (2) | 2.00 (2) | 2.811 (2) | 171 (2) |
| N13—H13 | 0.82 (2) | 2.36 (2) | 2.933 (2) | 128 (2) |
| N13—H13 | 0.82 (2) | 2.46 (2) | 3.158 (2) | 144 (2) |
| O1 | 0.84 | 1.91 | 2.745 (2) | 174 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O9—H9⋯O1 | 0.84 | 1.87 | 2.694 (2) | 169 |
| N13—H13 | 0.81 (2) | 2.00 (2) | 2.811 (2) | 171 (2) |
| N13—H13 | 0.82 (2) | 2.36 (2) | 2.933 (2) | 128 (2) |
| N13—H13 | 0.82 (2) | 2.46 (2) | 3.158 (2) | 144 (2) |
| O1 | 0.84 | 1.91 | 2.745 (2) | 174 |
Symmetry codes: (i) ; (ii) ; (iii) .