Literature DB >> 21578216

3-Hydr-oxy-3-nitro-methyl-indolin-2-one.

Ying Tang1, Gang Chen, Jie Zhang, Shijun Chen.   

Abstract

In the title compound, C(9)H(8)N(2)O(4), the indolin-2-one ring system is substanti-ally planar [maximum deviation = 0.0353 (15) Å]. In the crystal structure, inter-molecular N-H⋯O and O-H⋯O hydrogen bonds are responsible for the formation of a three-dimensional network.

Entities:  

Year:  2009        PMID: 21578216      PMCID: PMC2971264          DOI: 10.1107/S1600536809039087

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Imre et al. (2001 ▶); Long et al. (1978 ▶).

Experimental

Crystal data

C9H8N2O4 M = 208.17 Orthorhombic, a = 10.515 (2) Å b = 7.3736 (14) Å c = 23.261 (4) Å V = 1803.6 (6) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.21 × 0.18 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.941, T max = 0.961 16322 measured reflections 3807 independent reflections 2098 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.135 S = 1.03 3807 reflections 136 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND Brandenburg (1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809039087/rz2364sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039087/rz2364Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8N2O4F(000) = 864
Mr = 208.17Dx = 1.533 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3122 reflections
a = 10.515 (2) Åθ = 1.8–34.3°
b = 7.3736 (14) ŵ = 0.12 mm1
c = 23.261 (4) ÅT = 293 K
V = 1803.6 (6) Å3Block, colourless
Z = 80.21 × 0.18 × 0.15 mm
Bruker SMART CCD area-detector diffractometer3807 independent reflections
Radiation source: fine-focus sealed tube2098 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 34.3°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −12→12
Tmin = 0.941, Tmax = 0.961k = −9→11
16322 measured reflectionsl = −28→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0699P)2 + 0.2564P] where P = (Fo2 + 2Fc2)/3
3807 reflections(Δ/σ)max = 0.001
136 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.73793 (10)0.22536 (14)0.59575 (4)0.0345 (2)
H1A0.81210.26840.58820.041*
C70.68870 (11)0.20320 (15)0.65183 (5)0.0313 (3)
C80.56744 (11)0.12898 (14)0.64887 (5)0.0294 (2)
C20.53211 (11)0.10262 (14)0.58677 (5)0.0287 (2)
O10.67140 (9)0.16574 (14)0.50346 (4)0.0452 (3)
C30.50087 (12)0.08802 (17)0.69844 (5)0.0374 (3)
H3A0.41960.03860.69660.045*
C90.41221 (12)0.20580 (16)0.56828 (5)0.0354 (3)
H9A0.40590.20480.52670.043*
H9B0.33770.14530.58370.043*
C60.74609 (13)0.24268 (17)0.70380 (5)0.0396 (3)
H6A0.82640.29510.70550.048*
N20.41524 (12)0.39586 (15)0.58894 (5)0.0470 (3)
C50.67832 (15)0.20049 (18)0.75336 (6)0.0450 (3)
H5A0.71450.22530.78900.054*
C40.55872 (14)0.1227 (2)0.75123 (5)0.0448 (3)
H4A0.51670.09340.78520.054*
O30.50508 (14)0.48843 (17)0.57450 (9)0.0904 (5)
O40.32881 (14)0.44827 (19)0.61941 (6)0.0776 (4)
C10.65394 (11)0.17044 (15)0.55545 (5)0.0317 (3)
O20.51621 (8)−0.08414 (11)0.57414 (4)0.0391 (2)
H2A0.4586−0.09660.55070.059*
U11U22U33U12U13U23
N10.0244 (5)0.0384 (5)0.0408 (5)−0.0081 (4)−0.0017 (4)0.0000 (4)
C70.0299 (6)0.0267 (5)0.0372 (6)0.0003 (4)−0.0040 (4)0.0000 (4)
C80.0259 (6)0.0268 (5)0.0353 (5)0.0019 (4)−0.0030 (4)0.0005 (4)
C20.0237 (6)0.0254 (5)0.0370 (5)−0.0008 (4)−0.0022 (4)−0.0024 (4)
O10.0378 (5)0.0603 (6)0.0374 (5)−0.0092 (4)0.0023 (4)−0.0040 (4)
C30.0303 (6)0.0389 (6)0.0431 (6)0.0043 (5)0.0031 (5)0.0048 (5)
C90.0276 (6)0.0352 (6)0.0435 (6)0.0037 (5)−0.0069 (5)−0.0055 (5)
C60.0370 (7)0.0356 (6)0.0463 (6)−0.0006 (5)−0.0139 (5)−0.0037 (5)
N20.0474 (7)0.0366 (6)0.0569 (7)0.0135 (5)−0.0168 (5)−0.0048 (5)
C50.0520 (8)0.0454 (7)0.0377 (6)0.0136 (6)−0.0120 (5)−0.0052 (5)
C40.0476 (8)0.0503 (7)0.0364 (6)0.0154 (6)0.0037 (5)0.0044 (5)
O30.0736 (9)0.0354 (6)0.1620 (17)−0.0061 (6)−0.0100 (9)0.0024 (7)
O40.0866 (10)0.0763 (8)0.0700 (8)0.0389 (7)−0.0037 (7)−0.0255 (7)
C10.0262 (6)0.0314 (5)0.0374 (6)−0.0017 (4)−0.0008 (4)−0.0019 (4)
O20.0317 (5)0.0265 (4)0.0591 (5)−0.0010 (3)−0.0098 (4)−0.0076 (3)
N1—C11.3500 (16)C3—H3A0.9300
N1—C71.4130 (16)C9—N21.4819 (17)
N1—H1A0.8600C9—H9A0.9700
C7—C61.3822 (17)C9—H9B0.9700
C7—C81.3893 (17)C6—C51.390 (2)
C8—C31.3823 (17)C6—H6A0.9300
C8—C21.5042 (15)N2—O31.2129 (19)
C2—O21.4180 (13)N2—O41.2155 (18)
C2—C91.5340 (16)C5—C41.383 (2)
C2—C11.5563 (16)C5—H5A0.9300
O1—C11.2237 (14)C4—H4A0.9300
C3—C41.3940 (19)O2—H2A0.8200
C1—N1—C7111.51 (10)C2—C9—H9A109.4
C1—N1—H1A124.2N2—C9—H9B109.4
C7—N1—H1A124.2C2—C9—H9B109.4
C6—C7—C8121.81 (11)H9A—C9—H9B108.0
C6—C7—N1128.55 (11)C7—C6—C5117.02 (12)
C8—C7—N1109.63 (10)C7—C6—H6A121.5
C3—C8—C7120.63 (11)C5—C6—H6A121.5
C3—C8—C2130.37 (11)O3—N2—O4124.39 (14)
C7—C8—C2108.98 (10)O3—N2—C9117.33 (13)
O2—C2—C8110.71 (9)O4—N2—C9118.28 (14)
O2—C2—C9109.07 (9)C4—C5—C6121.94 (12)
C8—C2—C9114.09 (9)C4—C5—H5A119.0
O2—C2—C1108.19 (9)C6—C5—H5A119.0
C8—C2—C1101.81 (9)C5—C4—C3120.29 (12)
C9—C2—C1112.70 (9)C5—C4—H4A119.9
C8—C3—C4118.28 (12)C3—C4—H4A119.9
C8—C3—H3A120.9O1—C1—N1126.62 (11)
C4—C3—H3A120.9O1—C1—C2125.24 (10)
N2—C9—C2111.13 (9)N1—C1—C2108.05 (10)
N2—C9—H9A109.4C2—O2—H2A109.5
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.862.132.9849 (14)171
O2—H2A···O1ii0.821.932.7408 (13)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.862.132.9849 (14)171
O2—H2A⋯O1ii0.821.932.7408 (13)171

Symmetry codes: (i) ; (ii) .

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