Literature DB >> 23424544

2-(4-Meth-oxy-phen-yl)-1-phenyl-1H-benzimidazole.

T Mohandas1, K Jayamoorthy, J Jayabharathi, P Sakthivel.   

Abstract

In the title compound, C(20)H(16)N(2)O, the 1H-benzimidazole ring forms dihedral angles of 48.00 (6) and 64.48 (6)°, respectively with the benzene and phenyl rings, which are inclined to one another by 58.51 (7)°. In the crystal, weak C-H⋯π inter-actions are the only inter-molecular inter-actions present.

Entities:  

Year:  2013        PMID: 23424544      PMCID: PMC3569798          DOI: 10.1107/S1600536813001566

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to benzimidazole derivatives, see: Mason et al. (1999 ▶). For their biological activities such as anti­microbial & anti­cancer, anti­diabetic, anti­fungal, anti HIV and anti­viral, see: Demirayak et al. (2002 ▶); Minoura et al. (2004 ▶); Pawar et al. (2004 ▶); Rao et al. (2003 ▶); Tomei et al. (2003 ▶). For their action as polymerase and transcriptase inhibitors, see: Beaulieu et al. (2004 ▶; Morningstar et al. (2007 ▶); Roth et al. (1997 ▶); For other related studies, see: Jayabharathi et al. (2012 ▶)

Experimental

Crystal data

C20H16N2O M = 300.35 Monoclinic, a = 12.3220 (3) Å b = 7.3030 (2) Å c = 18.2450 (3) Å β = 108.909 (1)° V = 1553.22 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.956, T max = 0.999 13787 measured reflections 2728 independent reflections 2283 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.092 S = 1.03 2728 reflections 209 parameters H-atom parameters constrained Δρmax = 0.11 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2 and SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813001566/go2077sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813001566/go2077Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813001566/go2077Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N2OF(000) = 632
Mr = 300.35Dx = 1.284 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6267 reflections
a = 12.3220 (3) Åθ = 2.8–31.8°
b = 7.3030 (2) ŵ = 0.08 mm1
c = 18.2450 (3) ÅT = 293 K
β = 108.909 (1)°Block, colourless
V = 1553.22 (6) Å30.30 × 0.30 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2728 independent reflections
Radiation source: fine-focus sealed tube2283 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω and φ scanθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −14→14
Tmin = 0.956, Tmax = 0.999k = −8→8
13787 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0421P)2 + 0.3566P] where P = (Fo2 + 2Fc2)/3
2728 reflections(Δ/σ)max = 0.001
209 parametersΔρmax = 0.11 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All e.s.d.'s are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.15098 (14)0.1529 (3)0.11631 (12)0.0752 (5)
H1A0.15820.09170.16420.113*
H1B0.07560.13230.08030.113*
H1C0.16290.28190.12560.113*
C20.34701 (11)0.10389 (19)0.12724 (8)0.0448 (3)
C30.42477 (12)0.0429 (2)0.09213 (8)0.0486 (4)
H30.3983−0.01310.04380.058*
C40.54039 (12)0.0648 (2)0.12827 (7)0.0450 (3)
H40.59160.02550.10370.054*
C50.58222 (11)0.14511 (18)0.20131 (7)0.0385 (3)
C60.50382 (12)0.20005 (19)0.23664 (8)0.0443 (3)
H60.53020.25060.28600.053*
C70.38733 (12)0.1813 (2)0.20007 (8)0.0477 (3)
H70.33600.22090.22450.057*
C80.70531 (11)0.17362 (18)0.24035 (7)0.0375 (3)
C90.87357 (11)0.18293 (18)0.32458 (7)0.0404 (3)
C100.96985 (13)0.1720 (2)0.39081 (8)0.0513 (4)
H100.96460.12280.43660.062*
C111.07235 (13)0.2354 (2)0.38684 (9)0.0557 (4)
H111.13730.22940.43060.067*
C121.08135 (13)0.3089 (2)0.31854 (9)0.0546 (4)
H121.15230.35040.31780.066*
C130.98813 (12)0.3218 (2)0.25235 (8)0.0468 (3)
H130.99400.37160.20690.056*
C140.88502 (11)0.25677 (18)0.25688 (7)0.0377 (3)
C150.74297 (10)0.32860 (18)0.12689 (7)0.0365 (3)
C160.78572 (13)0.2560 (2)0.07224 (7)0.0478 (4)
H160.83630.15760.08450.057*
C170.75247 (15)0.3317 (2)−0.00127 (8)0.0589 (4)
H170.78070.2833−0.03870.071*
C180.67873 (15)0.4765 (3)−0.01939 (8)0.0626 (5)
H180.65650.5259−0.06900.075*
C190.63744 (13)0.5492 (2)0.03560 (9)0.0601 (4)
H190.58770.64880.02330.072*
C200.66926 (11)0.4754 (2)0.10932 (8)0.0479 (4)
H200.64110.52450.14660.057*
O10.23425 (8)0.08312 (16)0.08496 (6)0.0636 (3)
N10.77587 (9)0.24986 (15)0.20301 (5)0.0375 (3)
N20.76084 (9)0.13147 (17)0.31277 (6)0.0438 (3)
U11U22U33U12U13U23
O10.0447 (6)0.0665 (8)0.0712 (7)−0.0034 (5)0.0074 (5)−0.0040 (6)
N10.0387 (6)0.0421 (6)0.0310 (5)−0.0019 (5)0.0105 (4)0.0038 (4)
N20.0489 (7)0.0512 (7)0.0316 (5)0.0002 (5)0.0134 (5)0.0035 (5)
C10.0459 (9)0.0666 (12)0.1100 (15)0.0005 (8)0.0207 (9)−0.0018 (11)
C20.0426 (7)0.0394 (8)0.0483 (8)−0.0036 (6)0.0091 (6)0.0057 (6)
C30.0548 (8)0.0520 (9)0.0370 (7)−0.0121 (7)0.0121 (6)−0.0045 (6)
C40.0504 (8)0.0507 (9)0.0382 (7)−0.0071 (7)0.0203 (6)−0.0039 (6)
C50.0442 (7)0.0388 (7)0.0336 (6)−0.0036 (6)0.0142 (5)0.0030 (5)
C60.0505 (8)0.0461 (8)0.0377 (7)−0.0018 (6)0.0164 (6)−0.0038 (6)
C70.0478 (8)0.0461 (8)0.0532 (8)0.0027 (7)0.0220 (7)−0.0007 (7)
C80.0443 (7)0.0389 (7)0.0320 (6)−0.0010 (6)0.0160 (5)0.0002 (5)
C90.0468 (8)0.0394 (8)0.0333 (6)0.0038 (6)0.0105 (6)−0.0006 (5)
C100.0566 (9)0.0547 (9)0.0376 (7)0.0092 (7)0.0080 (6)0.0033 (6)
C110.0471 (8)0.0577 (10)0.0498 (8)0.0081 (7)−0.0015 (7)−0.0036 (7)
C120.0417 (8)0.0514 (9)0.0656 (10)−0.0010 (7)0.0103 (7)−0.0015 (8)
C130.0460 (8)0.0442 (8)0.0496 (8)−0.0006 (6)0.0147 (6)0.0032 (6)
C140.0405 (7)0.0351 (7)0.0360 (6)0.0029 (6)0.0103 (5)0.0005 (5)
C150.0380 (7)0.0403 (7)0.0301 (6)−0.0067 (6)0.0095 (5)0.0032 (5)
C160.0587 (9)0.0471 (9)0.0419 (7)−0.0050 (7)0.0225 (7)0.0000 (6)
C170.0781 (11)0.0663 (11)0.0376 (8)−0.0233 (9)0.0260 (7)−0.0047 (7)
C180.0695 (10)0.0707 (12)0.0367 (8)−0.0261 (9)0.0024 (7)0.0136 (8)
C190.0506 (9)0.0592 (10)0.0594 (9)−0.0021 (8)0.0024 (7)0.0211 (8)
C200.0455 (8)0.0510 (9)0.0461 (7)0.0003 (7)0.0136 (6)0.0050 (7)
O1—C11.421 (2)C15—C201.374 (2)
O1—C21.3616 (18)C16—C171.3842 (19)
N1—C81.3835 (17)C17—C181.363 (3)
N1—C141.3859 (17)C18—C191.371 (2)
N1—C151.4349 (15)C19—C201.383 (2)
N2—C81.3126 (16)C1—H1A0.9599
N2—C91.3868 (18)C1—H1B0.9599
C2—C31.387 (2)C1—H1C0.9600
C2—C71.380 (2)C3—H30.9301
C3—C41.371 (2)C4—H40.9299
C4—C51.3930 (18)C6—H60.9300
C5—C61.383 (2)C7—H70.9301
C5—C81.4666 (19)C10—H100.9301
C6—C71.380 (2)C11—H110.9299
C9—C101.395 (2)C12—H120.9302
C9—C141.3962 (18)C13—H130.9301
C10—C111.369 (2)C16—H160.9298
C11—C121.394 (2)C17—H170.9299
C12—C131.374 (2)C18—H180.9301
C13—C141.384 (2)C19—H190.9297
C15—C161.3759 (19)C20—H200.9301
C1—O1—C2117.99 (13)C18—C19—C20120.33 (15)
C8—N1—C14106.60 (10)C15—C20—C19119.28 (13)
C8—N1—C15127.76 (11)O1—C1—H1A109.47
C14—N1—C15125.22 (11)O1—C1—H1B109.47
C8—N2—C9105.19 (11)O1—C1—H1C109.47
O1—C2—C3115.69 (12)H1A—C1—H1B109.48
O1—C2—C7125.03 (13)H1A—C1—H1C109.47
C3—C2—C7119.28 (13)H1B—C1—H1C109.47
C2—C3—C4120.41 (13)C2—C3—H3119.80
C3—C4—C5120.90 (13)C4—C3—H3119.80
C4—C5—C6118.05 (13)C3—C4—H4119.56
C4—C5—C8121.88 (13)C5—C4—H4119.55
C6—C5—C8120.07 (12)C5—C6—H6119.33
C5—C6—C7121.34 (13)C7—C6—H6119.33
C2—C7—C6119.99 (14)C2—C7—H7120.01
N1—C8—N2112.60 (12)C6—C7—H7120.00
N1—C8—C5122.28 (11)C9—C10—H10120.82
N2—C8—C5125.12 (12)C11—C10—H10120.81
N2—C9—C10130.33 (12)C10—C11—H11119.36
N2—C9—C14110.52 (11)C12—C11—H11119.33
C10—C9—C14119.16 (13)C11—C12—H12119.14
C9—C10—C11118.37 (13)C13—C12—H12119.12
C10—C11—C12121.31 (15)C12—C13—H13121.75
C11—C12—C13121.75 (15)C14—C13—H13121.74
C12—C13—C14116.50 (13)C15—C16—H16120.49
N1—C14—C9105.09 (12)C17—C16—H16120.46
N1—C14—C13131.99 (12)C16—C17—H17119.69
C9—C14—C13122.91 (12)C18—C17—H17119.68
N1—C15—C16119.51 (12)C17—C18—H18120.02
N1—C15—C20119.77 (11)C19—C18—H18120.00
C16—C15—C20120.72 (12)C18—C19—H19119.83
C15—C16—C17119.05 (14)C20—C19—H19119.83
C16—C17—C18120.63 (15)C15—C20—H20120.35
C17—C18—C19119.98 (14)C19—C20—H20120.37
C1—O1—C2—C3−176.41 (14)C8—C5—C6—C7177.52 (13)
C1—O1—C2—C72.8 (2)C4—C5—C8—N147.29 (19)
C15—N1—C8—N2−173.11 (12)C4—C5—C8—N2−132.70 (15)
C14—N1—C8—C5179.73 (12)C4—C5—C6—C7−1.9 (2)
C8—N1—C14—C90.04 (14)C6—C5—C8—N247.9 (2)
C8—N1—C15—C16−120.52 (15)C5—C6—C7—C21.0 (2)
C14—N1—C15—C1667.90 (18)C14—C9—C10—C110.3 (2)
C8—N1—C15—C2059.48 (18)C10—C9—C14—C13−0.6 (2)
C14—N1—C15—C20−112.11 (15)N2—C9—C14—N10.19 (15)
C15—N1—C8—C56.9 (2)C10—C9—C14—N1−179.49 (12)
C15—N1—C14—C9173.11 (12)N2—C9—C10—C11−179.29 (14)
C8—N1—C14—C13−178.74 (15)N2—C9—C14—C13179.12 (13)
C15—N1—C14—C13−5.7 (2)C9—C10—C11—C12−0.2 (2)
C14—N1—C8—N2−0.28 (15)C10—C11—C12—C130.3 (2)
C8—N2—C9—C10179.28 (14)C11—C12—C13—C14−0.5 (2)
C9—N2—C8—C5−179.62 (13)C12—C13—C14—N1179.23 (14)
C9—N2—C8—N10.39 (15)C12—C13—C14—C90.6 (2)
C8—N2—C9—C14−0.35 (15)N1—C15—C16—C17179.30 (13)
C7—C2—C3—C4−2.1 (2)C16—C15—C20—C190.5 (2)
C3—C2—C7—C61.0 (2)C20—C15—C16—C17−0.7 (2)
O1—C2—C7—C6−178.14 (13)N1—C15—C20—C19−179.51 (13)
O1—C2—C3—C4177.13 (13)C15—C16—C17—C180.2 (2)
C2—C3—C4—C51.2 (2)C16—C17—C18—C190.5 (3)
C3—C4—C5—C8−178.60 (13)C17—C18—C19—C20−0.7 (3)
C3—C4—C5—C60.8 (2)C18—C19—C20—C150.2 (2)
C6—C5—C8—N1−132.09 (14)
D—H···AD—HH···AD···AD—H···A
C6—H6···Cg2i0.932.863.5361 (15)130
C13—H13···Cg3ii0.932.833.4594 (16)126
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 and Cg3 are the centroids of the C2–C7 and C9–C14 phenyl rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯Cg2i 0.932.863.5361 (15)130
C13—H13⋯Cg3ii 0.932.833.4594 (16)126

Symmetry codes: (i) ; (ii) .

  10 in total

1.  New 4-point pharmacophore method for molecular similarity and diversity applications: overview of the method and applications, including a novel approach to the design of combinatorial libraries containing privileged substructures.

Authors:  J S Mason; I Morize; P R Menard; D L Cheney; C Hulme; R F Labaudiniere
Journal:  J Med Chem       Date:  1999-08-26       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and anticancer and anti-HIV testing of some pyrazino[1,2-a]benzimidazole derivatives.

Authors:  Seref Demirayak; Usama Abu Mohsen; Ahmet Cağri Karaburun
Journal:  Eur J Med Chem       Date:  2002-03       Impact factor: 6.514

4.  Synthesis and biological activity of novel nonnucleoside inhibitors of HIV-1 reverse transcriptase. 2-Aryl-substituted benzimidazoles.

Authors:  T Roth; M L Morningstar; P L Boyer; S H Hughes; R W Buckheit; C J Michejda
Journal:  J Med Chem       Date:  1997-12-19       Impact factor: 7.446

5.  Synthesis, biological activity, and crystal structure of potent nonnucleoside inhibitors of HIV-1 reverse transcriptase that retain activity against mutant forms of the enzyme.

Authors:  Marshall L Morningstar; Thomas Roth; David W Farnsworth; Marilyn Kroeger Smith; Karen Watson; Robert W Buckheit; Kalyan Das; Wanyi Zhang; Eddy Arnold; John G Julias; Stephen H Hughes; Christopher J Michejda
Journal:  J Med Chem       Date:  2007-07-31       Impact factor: 7.446

6.  Studies of antimicrobial activity of N-alkyl and N-acyl 2-(4-thiazolyl)-1H-benzimidazoles.

Authors:  N S Pawar; D S Dalal; S R Shimpi; P P Mahulikar
Journal:  Eur J Pharm Sci       Date:  2004-02       Impact factor: 4.384

7.  Pharmacological characteristics of a novel nonthiazolidinedione insulin sensitizer, FK614.

Authors:  Hideaki Minoura; Shigeru Takeshita; Makoto Ita; Jiro Hirosumi; Miyuki Mabuchi; Ikuo Kawamura; Satoko Nakajima; Osamu Nakayama; Hiroshi Kayakiri; Teruo Oku; Akiko Ohkubo-Suzuki; Masao Fukagawa; Hitoshi Kojo; Kenichi Hanioka; Noritsugu Yamasaki; Takafumi Imoto; Yoshinori Kobayashi; Seitaro Mutoh
Journal:  Eur J Pharmacol       Date:  2004-06-28       Impact factor: 4.432

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

9.  Non-nucleoside inhibitors of the hepatitis C virus NS5B polymerase: discovery and preliminary SAR of benzimidazole derivatives.

Authors:  Pierre L Beaulieu; Michael Bös; Yves Bousquet; Gulrez Fazal; Jean Gauthier; James Gillard; Sylvie Goulet; Steven LaPlante; Marc-André Poupart; Sylvain Lefebvre; Ginette McKercher; Charles Pellerin; Volkhard Austel; George Kukolj
Journal:  Bioorg Med Chem Lett       Date:  2004-01-05       Impact factor: 2.823

10.  Mechanism of action and antiviral activity of benzimidazole-based allosteric inhibitors of the hepatitis C virus RNA-dependent RNA polymerase.

Authors:  Licia Tomei; Sergio Altamura; Linda Bartholomew; Antonino Biroccio; Alessandra Ceccacci; Laura Pacini; Frank Narjes; Nadia Gennari; Monica Bisbocci; Ilario Incitti; Laura Orsatti; Steven Harper; Ian Stansfield; Michael Rowley; Raffaele De Francesco; Giovanni Migliaccio
Journal:  J Virol       Date:  2003-12       Impact factor: 5.103

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.