Literature DB >> 23424489

4-(4-Nitro-benz-yl)pyridinium 3-carb-oxy-4-hy-droxy-benzene-sulfonate.

Graham Smith1, Urs D Wermuth.   

Abstract

In the title salt, C(12)H(11)N(2)O(2) (+)·C(7)H(5)O(6)S(-), the dihedral angle between the benzene and pyridine rings in the 4-(4-nitro-benz-yl)pyridinium cation is 82.7 (2)°. Within the anion there is an intramolecular hydroxy-O-H⋯O(carboxylic acid) bond. In the crystal, the cation forms a single N(+)-H⋯O(sulfonate) hydrogen bond with the anion. These cation-anion pairs inter-act through duplex anion carb-oxy-lic acid O-H⋯O(sulfonate) hydrogen bonds, giving a centrosymmetric cyclic association [graph set R(2) (2)(16)]. The crystals studied were non-merohedrally twinned.

Entities:  

Year:  2013        PMID: 23424489      PMCID: PMC3569266          DOI: 10.1107/S1600536813000093

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For data on 4-(4-nitro­benz­yl)pyridine adduct and salt structures, see: Smith et al. (1997 ▶); Smith & Wermuth (2010 ▶). For examples of the structures of salts of 5-sulfosalicylic acid, see: Raj et al. (2003 ▶); Smith et al. (2004 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C12H11N2O2 +·C7H5O6S M = 432.41 Monoclinic, a = 7.4154 (7) Å b = 12.8896 (10) Å c = 19.649 (2) Å β = 92.848 (9)° V = 1875.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 200 K 0.25 × 0.20 × 0.15 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.916, T max = 0.980 14534 measured reflections 3671 independent reflections 2631 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.173 S = 1.21 3671 reflections 272 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.54 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 2012 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813000093/bh2470sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000093/bh2470Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813000093/bh2470Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N2O2+·C7H5O6SF(000) = 896
Mr = 432.41Dx = 1.531 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3757 reflections
a = 7.4154 (7) Åθ = 3.2–28.8°
b = 12.8896 (10) ŵ = 0.23 mm1
c = 19.649 (2) ÅT = 200 K
β = 92.848 (9)°Block, colourless
V = 1875.8 (3) Å30.25 × 0.20 × 0.15 mm
Z = 4
Oxford Diffraction Gemini-S CCD-detector diffractometer3671 independent reflections
Radiation source: Enhance (Mo) X-ray source2631 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.049
Detector resolution: 16.077 pixels mm-1θmax = 26.0°, θmin = 3.2°
ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −15→15
Tmin = 0.916, Tmax = 0.980l = 0→24
14534 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.173H-atom parameters constrained
S = 1.21w = 1/[σ2(Fo2) + (0.0464P)2 + 2.5904P] where P = (Fo2 + 2Fc2)/3
3671 reflections(Δ/σ)max < 0.001
272 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.54 e Å3
0 constraints
xyzUiso*/Ueq
O410.5308 (6)1.2075 (3)0.6714 (2)0.0669 (15)
O420.4378 (6)1.1939 (3)0.5666 (2)0.0580 (16)
N10.6089 (5)0.4772 (3)0.58094 (19)0.0343 (14)
N410.4750 (5)1.1565 (3)0.6224 (2)0.0374 (14)
C20.6921 (7)0.5677 (4)0.5906 (3)0.0433 (19)
C30.6005 (7)0.6507 (4)0.6162 (3)0.0363 (16)
C40.4226 (6)0.6405 (3)0.6324 (2)0.0265 (14)
C50.3420 (6)0.5439 (3)0.6213 (2)0.0332 (16)
C60.4369 (7)0.4631 (3)0.5959 (2)0.0347 (16)
C110.3719 (6)0.8367 (3)0.6512 (2)0.0304 (16)
C210.4350 (8)0.8981 (4)0.7051 (2)0.0439 (19)
C310.4738 (7)1.0020 (4)0.6955 (3)0.0447 (19)
C410.4452 (6)1.0441 (3)0.6322 (2)0.0294 (16)
C420.3137 (7)0.7262 (3)0.6619 (2)0.0351 (16)
C510.3888 (6)0.9853 (4)0.5774 (2)0.0328 (16)
C610.3547 (6)0.8809 (3)0.5871 (2)0.0305 (14)
S5A0.96726 (16)0.31180 (8)0.53828 (6)0.0283 (3)
O2A1.0084 (6)−0.0013 (3)0.75787 (17)0.0573 (14)
O11A0.8687 (5)−0.0882 (2)0.55774 (16)0.0372 (10)
O12A0.9140 (5)−0.1398 (2)0.66576 (17)0.0427 (11)
O51A0.7756 (5)0.3169 (2)0.51826 (16)0.0385 (11)
O52A1.0352 (5)0.4070 (2)0.56822 (18)0.0433 (11)
O53A1.0709 (5)0.2754 (2)0.48221 (18)0.0503 (13)
C1A0.9474 (6)0.0393 (3)0.6394 (2)0.0317 (16)
C2A1.0008 (7)0.0680 (4)0.7061 (2)0.0363 (16)
C3A1.0483 (7)0.1698 (4)0.7204 (2)0.0443 (17)
C4A1.0432 (7)0.2439 (4)0.6695 (2)0.0361 (17)
C5A0.9863 (6)0.2161 (3)0.6031 (2)0.0250 (12)
C6A0.9407 (6)0.1142 (3)0.5884 (2)0.0273 (14)
C11A0.9080 (6)−0.0709 (3)0.6227 (2)0.0304 (14)
H10.667600.426100.564600.0410*
H20.812400.574900.580200.0520*
H30.658900.714100.622500.0440*
H50.221900.534300.631300.0400*
H60.382100.398800.589000.0420*
H210.451600.869200.748400.0520*
H310.518601.042500.731700.0540*
H510.373601.014800.534300.0390*
H610.319500.839900.549900.0370*
H4210.311400.714500.710600.0420*
H4220.190600.719400.643300.0420*
H2A0.97480−0.062700.733200.0860*
H3A1.083900.188600.764800.0530*
H4A1.077400.311900.679300.0430*
H6A0.905400.095600.543900.0320*
H11A0.88000−0.157000.543000.0560*
U11U22U33U12U13U23
O410.098 (3)0.0271 (19)0.074 (3)−0.016 (2)−0.012 (3)−0.020 (2)
O420.082 (3)0.033 (2)0.059 (3)−0.008 (2)0.004 (2)0.0134 (19)
N10.040 (3)0.027 (2)0.036 (2)0.0075 (19)0.0044 (18)0.0012 (18)
N410.034 (2)0.024 (2)0.054 (3)−0.0013 (18)−0.001 (2)−0.006 (2)
C20.032 (3)0.034 (3)0.065 (4)0.000 (2)0.013 (3)0.008 (3)
C30.039 (3)0.020 (2)0.050 (3)−0.004 (2)0.004 (2)0.003 (2)
C40.033 (3)0.021 (2)0.025 (2)−0.002 (2)−0.0044 (19)0.0075 (18)
C50.030 (3)0.031 (2)0.038 (3)−0.002 (2)−0.003 (2)−0.003 (2)
C60.043 (3)0.023 (2)0.037 (3)−0.003 (2)−0.008 (2)0.001 (2)
C110.033 (3)0.023 (2)0.035 (3)0.002 (2)0.001 (2)−0.007 (2)
C210.069 (4)0.035 (3)0.027 (3)−0.002 (3)−0.004 (2)0.000 (2)
C310.066 (4)0.028 (3)0.039 (3)0.000 (3)−0.009 (3)−0.011 (2)
C410.029 (3)0.023 (2)0.036 (3)0.001 (2)−0.001 (2)−0.008 (2)
C420.040 (3)0.026 (2)0.040 (3)0.003 (2)0.008 (2)0.001 (2)
C510.036 (3)0.031 (2)0.031 (3)−0.002 (2)−0.001 (2)0.001 (2)
C610.035 (3)0.030 (2)0.026 (2)−0.006 (2)−0.002 (2)−0.007 (2)
S5A0.0326 (6)0.0160 (5)0.0364 (6)−0.0023 (5)0.0040 (5)−0.0030 (5)
O2A0.093 (3)0.051 (2)0.0285 (19)0.004 (2)0.0092 (19)0.0112 (18)
O11A0.059 (2)0.0190 (15)0.0336 (18)−0.0051 (16)0.0011 (16)0.0005 (14)
O12A0.059 (2)0.0300 (18)0.040 (2)0.0037 (18)0.0116 (17)0.0138 (16)
O51A0.046 (2)0.0291 (17)0.0398 (19)−0.0026 (17)−0.0037 (15)−0.0011 (15)
O52A0.049 (2)0.0192 (16)0.061 (2)−0.0087 (16)−0.0056 (18)−0.0087 (16)
O53A0.079 (3)0.0230 (16)0.052 (2)0.0096 (18)0.036 (2)0.0085 (16)
C1A0.034 (3)0.028 (2)0.034 (3)0.003 (2)0.011 (2)0.005 (2)
C2A0.047 (3)0.037 (3)0.026 (2)0.010 (2)0.013 (2)0.004 (2)
C3A0.057 (3)0.049 (3)0.027 (3)0.002 (3)0.002 (2)−0.011 (2)
C4A0.039 (3)0.031 (3)0.039 (3)−0.004 (2)0.009 (2)−0.013 (2)
C5A0.022 (2)0.021 (2)0.032 (2)−0.0002 (18)0.0023 (19)−0.0011 (18)
C6A0.031 (3)0.028 (2)0.023 (2)−0.002 (2)0.0027 (19)−0.0013 (19)
C11A0.026 (2)0.031 (2)0.035 (3)0.002 (2)0.009 (2)0.005 (2)
S5A—C5A1.774 (4)C31—C411.364 (7)
S5A—O53A1.452 (4)C41—C511.365 (6)
S5A—O51A1.457 (4)C51—C611.384 (6)
S5A—O52A1.441 (3)C2—H20.9300
O41—N411.221 (6)C3—H30.9300
O42—N411.217 (6)C5—H50.9300
O2A—C2A1.353 (6)C6—H60.9300
O11A—C11A1.314 (5)C21—H210.9300
O12A—C11A1.226 (5)C31—H310.9300
O2A—H2A0.9500C42—H4220.9700
O11A—H11A0.9400C42—H4210.9700
N1—C61.336 (6)C51—H510.9300
N1—C21.329 (6)C61—H610.9300
N41—C411.480 (5)C1A—C11A1.484 (6)
N1—H10.8600C1A—C2A1.400 (6)
C2—C31.376 (7)C1A—C6A1.391 (6)
C3—C41.379 (7)C2A—C3A1.384 (7)
C4—C51.394 (6)C3A—C4A1.382 (6)
C4—C421.502 (6)C4A—C5A1.398 (6)
C5—C61.365 (6)C5A—C6A1.383 (6)
C11—C211.385 (6)C3A—H3A0.9300
C11—C421.506 (6)C4A—H4A0.9300
C11—C611.383 (6)C6A—H6A0.9300
C21—C311.385 (7)
O51A—S5A—O53A110.8 (2)C6—C5—H5119.00
O51A—S5A—C5A105.49 (19)N1—C6—H6120.00
O52A—S5A—O53A113.4 (2)C5—C6—H6120.00
O52A—S5A—C5A106.6 (2)C11—C21—H21120.00
O53A—S5A—C5A107.09 (19)C31—C21—H21119.00
O51A—S5A—O52A112.85 (19)C21—C31—H31120.00
C2A—O2A—H2A100.00C41—C31—H31120.00
C11A—O11A—H11A116.00C4—C42—H422108.00
C2—N1—C6122.0 (4)C11—C42—H421108.00
O41—N41—O42123.4 (4)C11—C42—H422108.00
O42—N41—C41118.5 (4)H421—C42—H422107.00
O41—N41—C41118.1 (4)C4—C42—H421108.00
C6—N1—H1119.00C41—C51—H51121.00
C2—N1—H1119.00C61—C51—H51121.00
N1—C2—C3120.1 (5)C11—C61—H61119.00
C2—C3—C4120.4 (5)C51—C61—H61119.00
C5—C4—C42118.9 (4)C6A—C1A—C11A120.4 (4)
C3—C4—C5117.2 (4)C2A—C1A—C11A120.2 (4)
C3—C4—C42123.9 (4)C2A—C1A—C6A119.3 (4)
C4—C5—C6120.9 (4)O2A—C2A—C3A118.2 (4)
N1—C6—C5119.5 (4)O2A—C2A—C1A121.9 (4)
C21—C11—C42121.5 (4)C1A—C2A—C3A119.9 (4)
C21—C11—C61118.3 (4)C2A—C3A—C4A120.7 (4)
C42—C11—C61120.2 (4)C3A—C4A—C5A119.6 (4)
C11—C21—C31120.9 (4)C4A—C5A—C6A119.8 (4)
C21—C31—C41119.0 (5)S5A—C5A—C4A120.1 (3)
N41—C41—C31119.4 (4)S5A—C5A—C6A120.0 (3)
N41—C41—C51118.9 (4)C1A—C6A—C5A120.6 (4)
C31—C41—C51121.7 (4)O12A—C11A—C1A122.8 (4)
C4—C42—C11118.6 (4)O11A—C11A—O12A123.1 (4)
C41—C51—C61118.8 (4)O11A—C11A—C1A114.1 (3)
C11—C61—C51121.1 (4)C2A—C3A—H3A120.00
N1—C2—H2120.00C4A—C3A—H3A120.00
C3—C2—H2120.00C3A—C4A—H4A120.00
C4—C3—H3120.00C5A—C4A—H4A120.00
C2—C3—H3120.00C1A—C6A—H6A120.00
C4—C5—H5120.00C5A—C6A—H6A120.00
O53A—S5A—C5A—C6A−54.6 (4)C42—C11—C61—C51172.9 (4)
O52A—S5A—C5A—C4A5.3 (4)C11—C21—C31—C411.4 (8)
O53A—S5A—C5A—C4A126.9 (4)C21—C31—C41—N41176.1 (5)
O51A—S5A—C5A—C4A−114.9 (4)C21—C31—C41—C51−3.6 (8)
O52A—S5A—C5A—C6A−176.3 (4)C31—C41—C51—C612.0 (7)
O51A—S5A—C5A—C6A63.5 (4)N41—C41—C51—C61−177.7 (4)
C6—N1—C2—C3−0.6 (8)C41—C51—C61—C111.9 (7)
C2—N1—C6—C50.6 (7)C2A—C1A—C11A—O11A−176.6 (4)
O41—N41—C41—C312.5 (6)C2A—C1A—C11A—O12A2.6 (7)
O42—N41—C41—C514.3 (6)C6A—C1A—C11A—O11A0.1 (6)
O41—N41—C41—C51−177.8 (4)C6A—C1A—C11A—O12A179.2 (4)
O42—N41—C41—C31−175.4 (5)C11A—C1A—C2A—O2A−3.8 (7)
N1—C2—C3—C40.4 (8)C11A—C1A—C2A—C3A175.9 (4)
C2—C3—C4—C42178.7 (5)C2A—C1A—C6A—C5A0.0 (7)
C2—C3—C4—C5−0.4 (7)C11A—C1A—C6A—C5A−176.7 (4)
C3—C4—C5—C60.5 (6)C6A—C1A—C2A—O2A179.4 (5)
C42—C4—C5—C6−178.6 (4)C6A—C1A—C2A—C3A−0.8 (7)
C3—C4—C42—C1122.4 (6)O2A—C2A—C3A—C4A180.0 (5)
C5—C4—C42—C11−158.6 (4)C1A—C2A—C3A—C4A0.2 (8)
C4—C5—C6—N1−0.6 (6)C2A—C3A—C4A—C5A1.2 (8)
C61—C11—C42—C469.8 (6)C3A—C4A—C5A—C6A−1.9 (7)
C21—C11—C61—C51−3.9 (7)C3A—C4A—C5A—S5A176.5 (4)
C21—C11—C42—C4−113.5 (5)S5A—C5A—C6A—C1A−177.2 (3)
C42—C11—C21—C31−174.6 (5)C4A—C5A—C6A—C1A1.3 (7)
C61—C11—C21—C312.3 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1···O51A0.861.882.732 (5)172
O2A—H2A···O12A0.951.702.613 (5)159
O11A—H11A···O53Ai0.941.652.583 (4)172
C2—H2···O53Aii0.932.473.078 (6)123
C3A—H3A···O12Aiii0.932.603.323 (6)135
C4A—H4A···O52A0.932.512.893 (6)105
C5—H5···O52Aiv0.932.443.024 (5)120
C6—H6···O52Aiv0.932.593.087 (6)114
C6A—H6A···O11A0.932.402.724 (5)100
C61—H61···O51Av0.932.513.394 (5)160
C42—H421···O41vi0.972.553.427 (6)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O51A 0.861.882.732 (5)172
O2A—H2A⋯O12A 0.951.702.613 (5)159
O11A—H11A⋯O53A i 0.941.652.583 (4)172

Symmetry code: (i) .

  5 in total

1.  Hydrogen bonding in proton-transfer compounds of 5-sulfosalicylic acid with bicyclic heteroaromatic Lewis bases.

Authors:  Graham Smith; Urs D Wermuth; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2004-07-21       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  4-(4-Nitro-benz-yl)pyridinium 5-nitro-salicylate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-24

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  4-(4-Nitro-benz-yl)pyridine.

Authors:  Deeb Taher; Firas F Awwadi; Mohammed H Kailani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-26
  1 in total

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