Literature DB >> 21579214

4-(4-Nitro-benz-yl)pyridinium 5-nitro-salicylate.

Graham Smith1, Urs D Wermuth.   

Abstract

In the title salt, C(12)H(11)N(2)O(2) (+)·C(7)H(4)NO(5) (-), the cations and anions inter-act through asymmetric cyclic pyridinium-carboxyl-ate N-H⋯O,O' hydrogen-bonding associations [graph set R(1) (2)(4)], giving discrete heterodimers having weak cation-anion π-π aromatic ring inter-actions [minimum ring centroid separation = 3.7116 (9) Å].

Entities:  

Year:  2010        PMID: 21579214      PMCID: PMC2979186          DOI: 10.1107/S1600536810014698

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural data on nitro-substituted 4-benzyl­pyridines and related compounds, see Seff & Trueblood (1968 ▶); Ottersen & Seff (1974 ▶); Scherl et al. (1996 ▶); Smith et al. (1997 ▶); Naumov et al. (2002 ▶). For structures of Lewis base salts of 5-nitro­salicylic acid, see: Smith et al. (1996 ▶, 2005 ▶, 2006 ▶). For graph-set motifs, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C12H11N2O2 +·C7H4NO5 M = 397.34 Triclinic, a = 8.3287 (5) Å b = 10.8219 (7) Å c = 11.3896 (8) Å α = 65.160 (6)° β = 88.286 (5)° γ = 70.553 (6)° V = 871.17 (12) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 200 K 0.25 × 0.25 × 0.20 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.795, T max = 0.900 10797 measured reflections 3419 independent reflections 2615 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.091 S = 1.03 3419 reflections 270 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 1999 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810014698/pv2273sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014698/pv2273Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N2O2+·C7H4NO5Z = 2
Mr = 397.34F(000) = 412
Triclinic, P1Dx = 1.515 Mg m3
Hall symbol: -P 1Melting point = 416–417 K
a = 8.3287 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.8219 (7) ÅCell parameters from 5316 reflections
c = 11.3896 (8) Åθ = 3.5–27.3°
α = 65.160 (6)°µ = 0.12 mm1
β = 88.286 (5)°T = 200 K
γ = 70.553 (6)°Block, yellow
V = 871.17 (12) Å30.25 × 0.25 × 0.20 mm
Oxford Diffraction Gemini-S CCD-detector diffractometer3419 independent reflections
Radiation source: Enhance (Mo) X-ray source2615 reflections with I > 2σ(I)
graphiteRint = 0.021
ω scansθmax = 26.0°, θmin = 3.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.795, Tmax = 0.900k = −13→13
10797 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0545P)2] where P = (Fo2 + 2Fc2)/3
3419 reflections(Δ/σ)max = 0.001
270 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O410.59084 (14)0.14581 (11)0.23776 (10)0.0489 (4)
O420.42667 (14)0.05808 (12)0.17918 (10)0.0510 (4)
N10.16696 (14)0.34798 (12)0.86559 (10)0.0324 (4)
N410.46108 (16)0.11510 (12)0.24364 (11)0.0383 (4)
C20.23613 (17)0.20902 (15)0.88611 (13)0.0337 (4)
C30.18362 (17)0.16091 (14)0.80647 (12)0.0320 (4)
C40.05789 (16)0.25761 (14)0.70081 (12)0.0289 (4)
C5−0.01214 (17)0.40136 (14)0.68153 (13)0.0316 (4)
C60.04413 (18)0.44346 (15)0.76571 (13)0.0346 (4)
C110.12505 (16)0.18753 (13)0.51267 (12)0.0283 (4)
C210.28151 (17)0.20737 (14)0.51098 (12)0.0308 (4)
C310.39116 (17)0.18636 (14)0.42196 (12)0.0319 (4)
C410.34282 (17)0.14340 (13)0.33503 (12)0.0308 (4)
C420.00262 (17)0.20617 (16)0.61020 (13)0.0363 (5)
C510.18791 (18)0.12374 (14)0.33259 (13)0.0360 (4)
C610.07906 (17)0.14782 (14)0.42063 (13)0.0342 (4)
O2A0.08063 (12)0.85096 (11)0.92983 (10)0.0424 (3)
O11A0.28861 (12)0.41609 (10)1.02623 (9)0.0375 (3)
O12A0.11745 (14)0.63753 (11)0.88914 (10)0.0477 (4)
O51A0.63063 (13)0.55882 (12)1.41523 (10)0.0484 (4)
O52A0.65275 (13)0.37091 (12)1.38388 (11)0.0512 (4)
N5A0.58706 (15)0.50136 (14)1.35463 (11)0.0362 (4)
C1A0.28307 (16)0.61579 (14)1.06572 (12)0.0282 (4)
C2A0.20276 (17)0.76553 (14)1.03229 (13)0.0318 (4)
C3A0.24883 (18)0.82552 (15)1.10787 (13)0.0363 (4)
C4A0.37383 (17)0.73914 (15)1.21296 (13)0.0346 (5)
C5A0.45327 (16)0.59222 (14)1.24384 (12)0.0303 (4)
C6A0.40963 (16)0.53007 (14)1.17166 (12)0.0279 (4)
C11A0.22703 (17)0.55144 (15)0.98847 (13)0.0316 (4)
H10.213 (2)0.3733 (19)0.9259 (18)0.074 (6)*
H20.321600.144000.955900.0400*
H30.231900.063500.822900.0380*
H5−0.096900.468900.611800.0380*
H6−0.003800.539700.753100.0420*
H210.313300.235300.570900.0370*
H310.495200.200900.420900.0380*
H510.157500.094900.272900.0430*
H61−0.027100.137400.418500.0410*
H421−0.108700.275400.562600.0440*
H422−0.011300.113700.662200.0440*
H2A0.078 (3)0.773 (2)0.9050 (19)0.091 (7)*
H3A0.194600.923801.086700.0440*
H4A0.405300.778401.263200.0420*
H6A0.464800.431601.194000.0340*
U11U22U33U12U13U23
O410.0475 (7)0.0522 (7)0.0479 (7)−0.0139 (5)0.0127 (5)−0.0259 (5)
O420.0613 (7)0.0543 (7)0.0382 (6)−0.0051 (5)−0.0024 (5)−0.0320 (5)
N10.0377 (6)0.0375 (7)0.0289 (6)−0.0167 (5)0.0056 (5)−0.0181 (5)
N410.0443 (7)0.0313 (6)0.0287 (6)−0.0011 (6)−0.0020 (5)−0.0124 (5)
C20.0347 (7)0.0353 (8)0.0267 (7)−0.0090 (6)−0.0010 (6)−0.0118 (6)
C30.0368 (8)0.0297 (7)0.0299 (7)−0.0101 (6)0.0025 (6)−0.0145 (6)
C40.0295 (7)0.0364 (7)0.0256 (7)−0.0153 (6)0.0062 (5)−0.0153 (6)
C50.0303 (7)0.0326 (7)0.0279 (7)−0.0082 (6)0.0009 (5)−0.0115 (6)
C60.0394 (8)0.0304 (7)0.0346 (8)−0.0123 (6)0.0076 (6)−0.0149 (6)
C110.0344 (7)0.0232 (7)0.0253 (7)−0.0088 (6)−0.0029 (5)−0.0093 (5)
C210.0395 (8)0.0313 (7)0.0274 (7)−0.0154 (6)0.0006 (6)−0.0155 (6)
C310.0362 (7)0.0320 (7)0.0292 (7)−0.0137 (6)0.0011 (6)−0.0134 (6)
C410.0375 (7)0.0241 (7)0.0245 (7)−0.0033 (6)−0.0016 (6)−0.0103 (5)
C420.0364 (8)0.0465 (9)0.0350 (8)−0.0190 (7)0.0028 (6)−0.0226 (7)
C510.0428 (8)0.0354 (8)0.0318 (7)−0.0081 (6)−0.0080 (6)−0.0199 (6)
C610.0343 (8)0.0350 (7)0.0352 (7)−0.0115 (6)−0.0047 (6)−0.0171 (6)
O2A0.0421 (6)0.0345 (6)0.0410 (6)−0.0050 (5)−0.0063 (5)−0.0134 (5)
O11A0.0435 (6)0.0341 (6)0.0381 (6)−0.0102 (4)−0.0051 (4)−0.0205 (5)
O12A0.0556 (7)0.0421 (6)0.0397 (6)−0.0083 (5)−0.0168 (5)−0.0181 (5)
O51A0.0545 (7)0.0607 (7)0.0454 (6)−0.0312 (6)−0.0048 (5)−0.0280 (5)
O52A0.0475 (6)0.0438 (6)0.0574 (7)−0.0075 (5)−0.0177 (5)−0.0226 (6)
N5A0.0347 (6)0.0464 (8)0.0363 (7)−0.0208 (6)0.0015 (5)−0.0210 (6)
C1A0.0273 (7)0.0331 (7)0.0287 (7)−0.0131 (6)0.0066 (5)−0.0160 (6)
C2A0.0299 (7)0.0330 (7)0.0321 (7)−0.0115 (6)0.0056 (6)−0.0136 (6)
C3A0.0403 (8)0.0310 (7)0.0426 (8)−0.0146 (6)0.0090 (6)−0.0193 (7)
C4A0.0385 (8)0.0409 (8)0.0385 (8)−0.0217 (7)0.0100 (6)−0.0245 (7)
C5A0.0272 (7)0.0379 (8)0.0314 (7)−0.0153 (6)0.0041 (5)−0.0174 (6)
C6A0.0271 (7)0.0307 (7)0.0296 (7)−0.0122 (6)0.0042 (5)−0.0149 (6)
C11A0.0317 (7)0.0382 (8)0.0286 (7)−0.0131 (6)0.0040 (6)−0.0173 (6)
O41—N411.2244 (19)C41—C511.379 (2)
O42—N411.2300 (18)C51—C611.380 (2)
O2A—C2A1.3378 (18)C2—H20.9300
O11A—C11A1.256 (2)C3—H30.9300
O12A—C11A1.2613 (18)C5—H50.9300
O51A—N5A1.2331 (19)C6—H60.9300
O52A—N5A1.227 (2)C21—H210.9300
O2A—H2A1.00 (2)C31—H310.9300
N1—C61.3366 (18)C42—H4210.9700
N1—C21.336 (2)C42—H4220.9700
N41—C411.4673 (19)C51—H510.9300
N1—H10.97 (2)C61—H610.9300
N5A—C5A1.4536 (18)C1A—C6A1.3828 (19)
C2—C31.363 (2)C1A—C11A1.494 (2)
C3—C41.3884 (19)C1A—C2A1.412 (2)
C4—C421.506 (2)C2A—C3A1.402 (2)
C4—C51.387 (2)C3A—C4A1.370 (2)
C5—C61.372 (2)C4A—C5A1.390 (2)
C11—C611.394 (2)C5A—C6A1.380 (2)
C11—C211.388 (2)C3A—H3A0.9300
C11—C421.516 (2)C4A—H4A0.9300
C21—C311.383 (2)C6A—H6A0.9300
C31—C411.376 (2)
C2A—O2A—H2A97.0 (12)C5—C6—H6120.00
C2—N1—C6120.47 (13)C11—C21—H21119.00
O41—N41—C41118.56 (12)C31—C21—H21119.00
O42—N41—C41118.07 (13)C41—C31—H31121.00
O41—N41—O42123.34 (13)C21—C31—H31121.00
C6—N1—H1123.7 (12)C4—C42—H421109.00
C2—N1—H1115.8 (12)C4—C42—H422109.00
O52A—N5A—C5A118.88 (13)C11—C42—H421109.00
O51A—N5A—O52A122.56 (13)C11—C42—H422109.00
O51A—N5A—C5A118.56 (14)H421—C42—H422108.00
N1—C2—C3121.14 (13)C61—C51—H51121.00
C2—C3—C4119.88 (14)C41—C51—H51121.00
C3—C4—C5117.93 (13)C11—C61—H61119.00
C5—C4—C42121.87 (12)C51—C61—H61119.00
C3—C4—C42120.20 (14)C2A—C1A—C11A119.62 (12)
C4—C5—C6119.72 (13)C6A—C1A—C11A120.95 (14)
N1—C6—C5120.84 (15)C2A—C1A—C6A119.41 (13)
C21—C11—C61118.29 (13)O2A—C2A—C1A120.58 (13)
C42—C11—C61118.58 (13)O2A—C2A—C3A119.38 (14)
C21—C11—C42123.13 (12)C1A—C2A—C3A120.04 (13)
C11—C21—C31121.31 (13)C2A—C3A—C4A119.91 (15)
C21—C31—C41118.51 (14)C3A—C4A—C5A119.44 (14)
N41—C41—C31119.00 (13)N5A—C5A—C6A118.90 (14)
C31—C41—C51122.04 (13)C4A—C5A—C6A121.88 (13)
N41—C41—C51118.94 (12)N5A—C5A—C4A119.22 (13)
C4—C42—C11114.93 (12)C1A—C6A—C5A119.31 (14)
C41—C51—C61118.52 (13)O11A—C11A—C1A118.90 (12)
C11—C61—C51121.28 (14)O12A—C11A—C1A117.35 (14)
N1—C2—H2119.00O11A—C11A—O12A123.74 (14)
C3—C2—H2119.00C2A—C3A—H3A120.00
C4—C3—H3120.00C4A—C3A—H3A120.00
C2—C3—H3120.00C3A—C4A—H4A120.00
C4—C5—H5120.00C5A—C4A—H4A120.00
C6—C5—H5120.00C1A—C6A—H6A120.00
N1—C6—H6120.00C5A—C6A—H6A120.00
C6—N1—C2—C3−0.1 (2)C11—C21—C31—C41−0.7 (2)
C2—N1—C6—C5−0.7 (2)C21—C31—C41—N41−177.57 (13)
O41—N41—C41—C31−7.89 (19)C21—C31—C41—C511.3 (2)
O41—N41—C41—C51173.20 (13)C31—C41—C51—C61−0.2 (2)
O42—N41—C41—C31170.27 (13)N41—C41—C51—C61178.73 (13)
O42—N41—C41—C51−8.65 (19)C41—C51—C61—C11−1.6 (2)
O52A—N5A—C5A—C4A177.68 (13)C6A—C1A—C2A—O2A179.64 (13)
O52A—N5A—C5A—C6A−2.8 (2)C6A—C1A—C2A—C3A−1.4 (2)
O51A—N5A—C5A—C4A−2.7 (2)C11A—C1A—C2A—O2A−2.0 (2)
O51A—N5A—C5A—C6A176.89 (13)C11A—C1A—C2A—C3A177.02 (13)
N1—C2—C3—C41.0 (2)C2A—C1A—C6A—C5A0.9 (2)
C2—C3—C4—C42178.32 (13)C11A—C1A—C6A—C5A−177.44 (13)
C2—C3—C4—C5−1.0 (2)C2A—C1A—C11A—O11A−173.72 (13)
C3—C4—C5—C60.2 (2)C2A—C1A—C11A—O12A5.3 (2)
C42—C4—C5—C6−179.08 (13)C6A—C1A—C11A—O11A4.6 (2)
C3—C4—C42—C11−77.72 (17)C6A—C1A—C11A—O12A−176.38 (13)
C5—C4—C42—C11101.54 (17)O2A—C2A—C3A—C4A−179.94 (14)
C4—C5—C6—N10.6 (2)C1A—C2A—C3A—C4A1.1 (2)
C61—C11—C21—C31−1.0 (2)C2A—C3A—C4A—C5A−0.3 (2)
C21—C11—C42—C43.8 (2)C3A—C4A—C5A—N5A179.37 (13)
C61—C11—C42—C4−176.59 (13)C3A—C4A—C5A—C6A−0.2 (2)
C21—C11—C61—C512.2 (2)N5A—C5A—C6A—C1A−179.70 (12)
C42—C11—C21—C31178.66 (14)C4A—C5A—C6A—C1A−0.2 (2)
C42—C11—C61—C51−177.47 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···O11A0.97 (2)1.612 (19)2.5804 (16)180 (2)
N1—H1···O12A0.97 (2)2.55 (2)3.1464 (18)120.2 (14)
O2A—H2A···O12A1.00 (2)1.48 (2)2.4623 (17)165 (2)
C2—H2···O42i0.932.393.2153 (17)148
C6—H6···O12A0.932.593.185 (2)122
C21—H21···O51Aii0.932.493.271 (2)142
C31—H31···O52Aiii0.932.493.322 (2)149
C42—H421···O52Aiv0.972.503.3828 (19)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O11A0.97 (2)1.612 (19)2.5804 (16)180 (2)
N1—H1⋯O12A0.97 (2)2.55 (2)3.1464 (18)120.2 (14)
O2A—H2A⋯O12A1.00 (2)1.48 (2)2.4623 (17)165 (2)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Structure of the photocolored 2-(2',4'-dinitrobenzyl)pyridine crystal: two-photon induced solid-state proton transfer with minor structural perturbation.

Authors:  Pance Naumov; Akiko Sekine; Hidehiro Uekusa; Yuji Ohashi
Journal:  J Am Chem Soc       Date:  2002-07-24       Impact factor: 15.419

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  2 in total

1.  4-(4-Nitro-benz-yl)pyridinium 3-carb-oxy-4-hy-droxy-benzene-sulfonate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-09

2.  4-(4-Nitro-benz-yl)pyridine.

Authors:  Deeb Taher; Firas F Awwadi; Mohammed H Kailani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-26
  2 in total

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