| Literature DB >> 23424458 |
Irene Nehls1, Olaf Hanebeck, Roland Becker, Franziska Emmerling.
Abstract
The title compound, {2-[(2-carbamoyleth-yl)amino]-3-methyl-penta-noic acid}, C(9)H(18)N(2)O(3), is of inter-est with respect to its biological activity. It was formed during an addition reaction between acryl-amide and the amino acid isoleucine. The crystal structure is a three-dimensional network built up by inter-molecular N-H⋯O and O-H⋯N hydrogen bonds.Entities:
Year: 2013 PMID: 23424458 PMCID: PMC3569235 DOI: 10.1107/S160053681205146X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H18N2O3 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 1516 reflections |
| θ = 1.8–27.5° | |
| µ = 0.09 mm−1 | |
| Needle, colourless | |
| 0.64 × 0.06 × 0.06 mm |
| Bruker APEX CCD area-detector diffractometer | 1516 independent reflections |
| Radiation source: fine-focus sealed tube | 1124 reflections with |
| Graphite monochromator | |
| ω/2θ scans | θmax = 27.5°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 7386 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1516 reflections | (Δ/σ)max < 0.001 |
| 127 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C10 | 0.7698 (9) | 0.2828 (6) | 0.55528 (14) | 0.1012 (15) | |
| H102 | 0.6633 | 0.2437 | 0.5256 | 0.152* | |
| H101 | 0.9239 | 0.2271 | 0.5568 | 0.152* | |
| H103 | 0.8073 | 0.3848 | 0.5472 | 0.152* | |
| C9 | 0.6365 (7) | 0.2719 (4) | 0.61206 (12) | 0.0594 (8) | |
| H9A | 0.6549 | 0.1718 | 0.6267 | 0.071* | |
| H9B | 0.4579 | 0.2899 | 0.6062 | 0.071* | |
| C11 | 0.6607 (8) | 0.5381 (3) | 0.64355 (12) | 0.0669 (10) | |
| H11A | 0.7246 | 0.6032 | 0.6728 | 0.100* | |
| H11B | 0.4800 | 0.5454 | 0.6422 | 0.100* | |
| H11C | 0.7297 | 0.5661 | 0.6070 | 0.100* | |
| C8 | 0.7355 (5) | 0.3811 (3) | 0.65718 (9) | 0.0416 (6) | |
| H8 | 0.9202 | 0.3770 | 0.6555 | 0.050* | |
| C6 | 0.6585 (4) | 0.3299 (3) | 0.71788 (9) | 0.0303 (5) | |
| H61 | 0.7165 | 0.2210 | 0.7210 | 0.036* | |
| C7 | 0.3729 (4) | 0.3374 (3) | 0.72786 (10) | 0.0325 (5) | |
| O3 | 0.2475 (3) | 0.22453 (18) | 0.71760 (8) | 0.0472 (5) | |
| O2 | 0.2878 (3) | 0.45814 (17) | 0.74539 (7) | 0.0461 (5) | |
| H21 | 0.1361 | 0.4499 | 0.7516 | 0.069* | |
| N5 | 0.7864 (3) | 0.42102 (19) | 0.76255 (7) | 0.0287 (4) | |
| H51 | 0.7098 | 0.5195 | 0.7647 | 0.034* | |
| C4 | 0.7693 (5) | 0.3514 (3) | 0.82032 (9) | 0.0387 (6) | |
| H41 | 0.8359 | 0.2514 | 0.8184 | 0.046* | |
| H42 | 0.5935 | 0.3452 | 0.8317 | 0.046* | |
| C3 | 0.9138 (5) | 0.4382 (3) | 0.86474 (10) | 0.0437 (6) | |
| H31 | 0.8541 | 0.5398 | 0.8653 | 0.052* | |
| H32 | 1.0916 | 0.4392 | 0.8549 | 0.052* | |
| C2 | 0.8789 (5) | 0.3691 (3) | 0.92360 (11) | 0.0441 (6) | |
| O1 | 0.6669 (4) | 0.3386 (3) | 0.94118 (8) | 0.0640 (7) | |
| N1 | 1.0852 (5) | 0.3443 (3) | 0.95370 (10) | 0.0571 (7) | |
| H1A | 1.0748 | 0.3050 | 0.9873 | 0.069* | |
| H1B | 1.2303 | 0.3674 | 0.9398 | 0.069* |
| C10 | 0.107 (4) | 0.145 (4) | 0.051 (2) | 0.017 (4) | 0.002 (2) | −0.022 (2) |
| C9 | 0.0570 (19) | 0.073 (2) | 0.0485 (16) | 0.0103 (17) | −0.0078 (16) | −0.0115 (14) |
| C11 | 0.087 (3) | 0.0601 (19) | 0.0532 (16) | −0.0004 (19) | 0.0045 (18) | 0.0146 (14) |
| C8 | 0.0266 (12) | 0.0569 (16) | 0.0414 (13) | 0.0032 (12) | 0.0010 (11) | 0.0006 (11) |
| C6 | 0.0201 (10) | 0.0329 (11) | 0.0379 (12) | 0.0000 (9) | −0.0006 (9) | −0.0035 (9) |
| C7 | 0.0210 (10) | 0.0351 (13) | 0.0414 (12) | 0.0018 (10) | −0.0020 (10) | 0.0028 (10) |
| O3 | 0.0258 (9) | 0.0366 (9) | 0.0792 (13) | −0.0046 (8) | −0.0105 (9) | 0.0016 (8) |
| O2 | 0.0176 (7) | 0.0442 (10) | 0.0765 (12) | 0.0006 (7) | 0.0048 (8) | −0.0150 (8) |
| N5 | 0.0205 (8) | 0.0306 (9) | 0.0351 (9) | 0.0005 (8) | 0.0001 (7) | 0.0010 (7) |
| C4 | 0.0326 (12) | 0.0442 (14) | 0.0391 (13) | −0.0061 (12) | −0.0010 (11) | 0.0080 (10) |
| C3 | 0.0359 (14) | 0.0528 (16) | 0.0423 (14) | −0.0086 (12) | −0.0040 (11) | 0.0059 (12) |
| C2 | 0.0343 (13) | 0.0568 (17) | 0.0412 (13) | −0.0005 (12) | −0.0004 (12) | 0.0029 (12) |
| O1 | 0.0384 (11) | 0.1044 (19) | 0.0493 (11) | −0.0072 (12) | 0.0022 (9) | 0.0191 (11) |
| N1 | 0.0412 (13) | 0.087 (2) | 0.0436 (12) | 0.0016 (13) | −0.0024 (11) | 0.0155 (12) |
| C10—C9 | 1.501 (5) | C7—O3 | 1.239 (3) |
| C10—H102 | 0.9600 | C7—O2 | 1.248 (3) |
| C10—H101 | 0.9600 | O2—H21 | 0.8200 |
| C10—H103 | 0.9600 | N5—C4 | 1.487 (3) |
| C9—C8 | 1.532 (4) | N5—H51 | 0.9781 |
| C9—H9A | 0.9700 | C4—C3 | 1.506 (3) |
| C9—H9B | 0.9700 | C4—H41 | 0.9700 |
| C11—C8 | 1.506 (4) | C4—H42 | 0.9700 |
| C11—H11A | 0.9600 | C3—C2 | 1.516 (3) |
| C11—H11B | 0.9600 | C3—H31 | 0.9700 |
| C11—H11C | 0.9600 | C3—H32 | 0.9700 |
| C8—C6 | 1.541 (3) | C2—O1 | 1.226 (3) |
| C8—H8 | 0.9800 | C2—N1 | 1.318 (3) |
| C6—N5 | 1.489 (3) | N1—H1A | 0.8600 |
| C6—C7 | 1.532 (3) | N1—H1B | 0.8600 |
| C6—H61 | 1.0319 | ||
| C9—C10—H102 | 109.5 | C7—C6—H61 | 109.0 |
| C9—C10—H101 | 109.5 | C8—C6—H61 | 105.7 |
| H102—C10—H101 | 109.5 | O3—C7—O2 | 125.9 (2) |
| C9—C10—H103 | 109.5 | O3—C7—C6 | 117.7 (2) |
| H102—C10—H103 | 109.5 | O2—C7—C6 | 116.4 (2) |
| H101—C10—H103 | 109.5 | C7—O2—H21 | 109.5 |
| C10—C9—C8 | 113.5 (3) | C4—N5—C6 | 111.72 (17) |
| C10—C9—H9A | 108.9 | C4—N5—H51 | 108.1 |
| C8—C9—H9A | 108.9 | C6—N5—H51 | 110.5 |
| C10—C9—H9B | 108.9 | N5—C4—C3 | 111.69 (19) |
| C8—C9—H9B | 108.9 | N5—C4—H41 | 109.3 |
| H9A—C9—H9B | 107.7 | C3—C4—H41 | 109.3 |
| C8—C11—H11A | 109.5 | N5—C4—H42 | 109.3 |
| C8—C11—H11B | 109.5 | C3—C4—H42 | 109.3 |
| H11A—C11—H11B | 109.5 | H41—C4—H42 | 107.9 |
| C8—C11—H11C | 109.5 | C4—C3—C2 | 110.1 (2) |
| H11A—C11—H11C | 109.5 | C4—C3—H31 | 109.6 |
| H11B—C11—H11C | 109.5 | C2—C3—H31 | 109.6 |
| C11—C8—C9 | 111.8 (2) | C4—C3—H32 | 109.6 |
| C11—C8—C6 | 113.9 (2) | C2—C3—H32 | 109.6 |
| C9—C8—C6 | 110.2 (2) | H31—C3—H32 | 108.2 |
| C11—C8—H8 | 106.9 | O1—C2—N1 | 123.0 (2) |
| C9—C8—H8 | 106.9 | O1—C2—C3 | 120.3 (2) |
| C6—C8—H8 | 106.9 | N1—C2—C3 | 116.7 (2) |
| N5—C6—C7 | 108.63 (18) | C2—N1—H1A | 120.0 |
| N5—C6—C8 | 110.73 (18) | C2—N1—H1B | 120.0 |
| C7—C6—C8 | 112.77 (19) | H1A—N1—H1B | 120.0 |
| N5—C6—H61 | 110.0 | ||
| C10—C9—C8—C11 | 71.4 (4) | N5—C6—C7—O2 | 35.8 (3) |
| C10—C9—C8—C6 | −160.9 (3) | C8—C6—C7—O2 | −87.3 (3) |
| C11—C8—C6—N5 | −62.4 (3) | C7—C6—N5—C4 | 70.3 (2) |
| C9—C8—C6—N5 | 171.1 (2) | C8—C6—N5—C4 | −165.35 (18) |
| C11—C8—C6—C7 | 59.6 (3) | C6—N5—C4—C3 | 176.1 (2) |
| C9—C8—C6—C7 | −66.9 (3) | N5—C4—C3—C2 | 176.6 (2) |
| N5—C6—C7—O3 | −144.6 (2) | C4—C3—C2—O1 | −49.4 (4) |
| C8—C6—C7—O3 | 92.2 (3) | C4—C3—C2—N1 | 130.4 (3) |
| H··· | ||||
| N1—H1 | 0.86 | 2.17 | 2.982 (3) | 159 |
| N1—H1 | 0.86 | 2.33 | 3.097 (4) | 149 |
| O2—H21···N5iii | 0.82 | 1.89 | 2.708 (2) | 176 |
| N5—H51···O3iv | 0.98 | 1.91 | 2.783 (3) | 147 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.17 | 2.982 (3) | 159 |
| N1—H1 | 0.86 | 2.33 | 3.097 (4) | 149 |
| O2—H21⋯N5iii | 0.82 | 1.89 | 2.708 (2) | 176 |
| N5—H51⋯O3iv | 0.98 | 1.91 | 2.783 (3) | 147 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .