Literature DB >> 23424458

N-(β-Carb-oxy-eth-yl)-α-isoleucine.

Irene Nehls1, Olaf Hanebeck, Roland Becker, Franziska Emmerling.   

Abstract

The title compound, {2-[(2-carbamoyleth-yl)amino]-3-methyl-penta-noic acid}, C(9)H(18)N(2)O(3), is of inter-est with respect to its biological activity. It was formed during an addition reaction between acryl-amide and the amino acid isoleucine. The crystal structure is a three-dimensional network built up by inter-molecular N-H⋯O and O-H⋯N hydrogen bonds.

Entities:  

Year:  2013        PMID: 23424458      PMCID: PMC3569235          DOI: 10.1107/S160053681205146X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For toxicological investigations on acryl­amide, see: Besaratinia & Pfeifer (2007 ▶); Parzefall (2008 ▶); Bowyer et al. (2009 ▶); Wang et al. (2010 ▶); Mei et al. (2010 ▶); Koyama et al. (2011 ▶); Lee et al. (2012 ▶); Nixon et al. (2012 ▶); Rice (2005 ▶). For directives on monitoring acryl­amide in drinking water, see: EU (2000 ▶). For the determination of acryl­amide in different media, see: Zangrando et al. (2012 ▶); Marin et al. (2006 ▶); Lucentini et al. (2009 ▶); Keramat et al. (2011 ▶); Tareke et al. (2002 ▶); Pittet et al. (2004 ▶); Castle & Eriksson (2005 ▶); Mizukami et al. (2006 ▶); Dias Soares et al. (2009 ▶); Alpmann & Morlock (2008 ▶); Preston et al. (2009 ▶); Perez & Osterman-Golkar (2003 ▶).

Experimental

Crystal data

C9H18N2O3 M = 202.25 Orthorhombic, a = 5.2989 (17) Å b = 9.024 (3) Å c = 23.268 (7) Å V = 1112.6 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.64 × 0.06 × 0.06 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.944, T max = 0.994 7386 measured reflections 1516 independent reflections 1124 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.114 S = 0.95 1516 reflections 127 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681205146X/bg2493sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681205146X/bg2493Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681205146X/bg2493Isup3.mol Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681205146X/bg2493Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H18N2O3F(000) = 440
Mr = 202.25Dx = 1.207 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1516 reflections
a = 5.2989 (17) Åθ = 1.8–27.5°
b = 9.024 (3) ŵ = 0.09 mm1
c = 23.268 (7) ÅT = 298 K
V = 1112.6 (6) Å3Needle, colourless
Z = 40.64 × 0.06 × 0.06 mm
Bruker APEX CCD area-detector diffractometer1516 independent reflections
Radiation source: fine-focus sealed tube1124 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.074
ω/2θ scansθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SHELXTL [SADABS?]; Sheldrick, 2008)h = −6→6
Tmin = 0.944, Tmax = 0.994k = −10→11
7386 measured reflectionsl = −30→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.0694P)2] where P = (Fo2 + 2Fc2)/3
1516 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C100.7698 (9)0.2828 (6)0.55528 (14)0.1012 (15)
H1020.66330.24370.52560.152*
H1010.92390.22710.55680.152*
H1030.80730.38480.54720.152*
C90.6365 (7)0.2719 (4)0.61206 (12)0.0594 (8)
H9A0.65490.17180.62670.071*
H9B0.45790.28990.60620.071*
C110.6607 (8)0.5381 (3)0.64355 (12)0.0669 (10)
H11A0.72460.60320.67280.100*
H11B0.48000.54540.64220.100*
H11C0.72970.56610.60700.100*
C80.7355 (5)0.3811 (3)0.65718 (9)0.0416 (6)
H80.92020.37700.65550.050*
C60.6585 (4)0.3299 (3)0.71788 (9)0.0303 (5)
H610.71650.22100.72100.036*
C70.3729 (4)0.3374 (3)0.72786 (10)0.0325 (5)
O30.2475 (3)0.22453 (18)0.71760 (8)0.0472 (5)
O20.2878 (3)0.45814 (17)0.74539 (7)0.0461 (5)
H210.13610.44990.75160.069*
N50.7864 (3)0.42102 (19)0.76255 (7)0.0287 (4)
H510.70980.51950.76470.034*
C40.7693 (5)0.3514 (3)0.82032 (9)0.0387 (6)
H410.83590.25140.81840.046*
H420.59350.34520.83170.046*
C30.9138 (5)0.4382 (3)0.86474 (10)0.0437 (6)
H310.85410.53980.86530.052*
H321.09160.43920.85490.052*
C20.8789 (5)0.3691 (3)0.92360 (11)0.0441 (6)
O10.6669 (4)0.3386 (3)0.94118 (8)0.0640 (7)
N11.0852 (5)0.3443 (3)0.95370 (10)0.0571 (7)
H1A1.07480.30500.98730.069*
H1B1.23030.36740.93980.069*
U11U22U33U12U13U23
C100.107 (4)0.145 (4)0.051 (2)0.017 (4)0.002 (2)−0.022 (2)
C90.0570 (19)0.073 (2)0.0485 (16)0.0103 (17)−0.0078 (16)−0.0115 (14)
C110.087 (3)0.0601 (19)0.0532 (16)−0.0004 (19)0.0045 (18)0.0146 (14)
C80.0266 (12)0.0569 (16)0.0414 (13)0.0032 (12)0.0010 (11)0.0006 (11)
C60.0201 (10)0.0329 (11)0.0379 (12)0.0000 (9)−0.0006 (9)−0.0035 (9)
C70.0210 (10)0.0351 (13)0.0414 (12)0.0018 (10)−0.0020 (10)0.0028 (10)
O30.0258 (9)0.0366 (9)0.0792 (13)−0.0046 (8)−0.0105 (9)0.0016 (8)
O20.0176 (7)0.0442 (10)0.0765 (12)0.0006 (7)0.0048 (8)−0.0150 (8)
N50.0205 (8)0.0306 (9)0.0351 (9)0.0005 (8)0.0001 (7)0.0010 (7)
C40.0326 (12)0.0442 (14)0.0391 (13)−0.0061 (12)−0.0010 (11)0.0080 (10)
C30.0359 (14)0.0528 (16)0.0423 (14)−0.0086 (12)−0.0040 (11)0.0059 (12)
C20.0343 (13)0.0568 (17)0.0412 (13)−0.0005 (12)−0.0004 (12)0.0029 (12)
O10.0384 (11)0.1044 (19)0.0493 (11)−0.0072 (12)0.0022 (9)0.0191 (11)
N10.0412 (13)0.087 (2)0.0436 (12)0.0016 (13)−0.0024 (11)0.0155 (12)
C10—C91.501 (5)C7—O31.239 (3)
C10—H1020.9600C7—O21.248 (3)
C10—H1010.9600O2—H210.8200
C10—H1030.9600N5—C41.487 (3)
C9—C81.532 (4)N5—H510.9781
C9—H9A0.9700C4—C31.506 (3)
C9—H9B0.9700C4—H410.9700
C11—C81.506 (4)C4—H420.9700
C11—H11A0.9600C3—C21.516 (3)
C11—H11B0.9600C3—H310.9700
C11—H11C0.9600C3—H320.9700
C8—C61.541 (3)C2—O11.226 (3)
C8—H80.9800C2—N11.318 (3)
C6—N51.489 (3)N1—H1A0.8600
C6—C71.532 (3)N1—H1B0.8600
C6—H611.0319
C9—C10—H102109.5C7—C6—H61109.0
C9—C10—H101109.5C8—C6—H61105.7
H102—C10—H101109.5O3—C7—O2125.9 (2)
C9—C10—H103109.5O3—C7—C6117.7 (2)
H102—C10—H103109.5O2—C7—C6116.4 (2)
H101—C10—H103109.5C7—O2—H21109.5
C10—C9—C8113.5 (3)C4—N5—C6111.72 (17)
C10—C9—H9A108.9C4—N5—H51108.1
C8—C9—H9A108.9C6—N5—H51110.5
C10—C9—H9B108.9N5—C4—C3111.69 (19)
C8—C9—H9B108.9N5—C4—H41109.3
H9A—C9—H9B107.7C3—C4—H41109.3
C8—C11—H11A109.5N5—C4—H42109.3
C8—C11—H11B109.5C3—C4—H42109.3
H11A—C11—H11B109.5H41—C4—H42107.9
C8—C11—H11C109.5C4—C3—C2110.1 (2)
H11A—C11—H11C109.5C4—C3—H31109.6
H11B—C11—H11C109.5C2—C3—H31109.6
C11—C8—C9111.8 (2)C4—C3—H32109.6
C11—C8—C6113.9 (2)C2—C3—H32109.6
C9—C8—C6110.2 (2)H31—C3—H32108.2
C11—C8—H8106.9O1—C2—N1123.0 (2)
C9—C8—H8106.9O1—C2—C3120.3 (2)
C6—C8—H8106.9N1—C2—C3116.7 (2)
N5—C6—C7108.63 (18)C2—N1—H1A120.0
N5—C6—C8110.73 (18)C2—N1—H1B120.0
C7—C6—C8112.77 (19)H1A—N1—H1B120.0
N5—C6—H61110.0
C10—C9—C8—C1171.4 (4)N5—C6—C7—O235.8 (3)
C10—C9—C8—C6−160.9 (3)C8—C6—C7—O2−87.3 (3)
C11—C8—C6—N5−62.4 (3)C7—C6—N5—C470.3 (2)
C9—C8—C6—N5171.1 (2)C8—C6—N5—C4−165.35 (18)
C11—C8—C6—C759.6 (3)C6—N5—C4—C3176.1 (2)
C9—C8—C6—C7−66.9 (3)N5—C4—C3—C2176.6 (2)
N5—C6—C7—O3−144.6 (2)C4—C3—C2—O1−49.4 (4)
C8—C6—C7—O392.2 (3)C4—C3—C2—N1130.4 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.862.172.982 (3)159
N1—H1B···O1ii0.862.333.097 (4)149
O2—H21···N5iii0.821.892.708 (2)176
N5—H51···O3iv0.981.912.783 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.862.172.982 (3)159
N1—H1B⋯O1ii 0.862.333.097 (4)149
O2—H21⋯N5iii 0.821.892.708 (2)176
N5—H51⋯O3iv 0.981.912.783 (3)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  19 in total

Review 1.  Analytical methods used to measure acrylamide concentrations in foods.

Authors:  Laurence Castle; Sune Eriksson
Journal:  J AOAC Int       Date:  2005 Jan-Feb       Impact factor: 1.913

2.  A short history of SHELX.

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3.  Study of different atmospheric-pressure interfaces for LC-MS/MS determination of acrylamide in water at sub-ppb levels.

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Journal:  J Mass Spectrom       Date:  2006-08       Impact factor: 1.982

Review 4.  The carcinogenicity of acrylamide.

Authors:  Jerry M Rice
Journal:  Mutat Res       Date:  2005-02-07       Impact factor: 2.433

5.  Analysis of acrylamide in green tea by gas chromatography-mass spectrometry.

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6.  The genotoxicity of acrylamide and glycidamide in big blue rats.

Authors:  Nan Mei; Lea P McDaniel; Vasily N Dobrovolsky; Xiaoqing Guo; Joseph G Shaddock; Roberta A Mittelstaedt; Mizuo Azuma; Sharon D Shelton; Lynda J McGarrity; Daniel R Doerge; Robert H Heflich
Journal:  Toxicol Sci       Date:  2010-03-03       Impact factor: 4.849

7.  The mRNA expression and histological integrity in rat forebrain motor and sensory regions are minimally affected by acrylamide exposure through drinking water.

Authors:  John F Bowyer; John R Latendresse; Robert R Delongchamp; Alan R Warbritton; Monzy Thomas; Becky Divine; Daniel R Doerge
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Review 8.  A review of mechanisms of acrylamide carcinogenicity.

Authors:  Ahmad Besaratinia; Gerd P Pfeifer
Journal:  Carcinogenesis       Date:  2007-01-18       Impact factor: 4.944

9.  Analysis of acrylamide, a carcinogen formed in heated foodstuffs.

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10.  Trace level determination of acrylamide in cereal-based foods by gas chromatography-mass spectrometry.

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  1 in total

1.  Redetermined crystal structure of N-(β-carb-oxy-eth-yl)-α-isoleucine.

Authors:  M Chandrarekha; N Srinivasan; R V Krishnakumar
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  1 in total

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