Literature DB >> 23424450

(1SR,3RS,3aSR,6aRS)-Methyl 5-methyl-4,6-dioxo-3-[2-(trifluoro-meth-yl)phen-yl]octa-hydro-pyrrolo-[3,4-c]pyrrole-1-carboxyl-ate.

Konstantin V Kudryavtsev1, Polina M Ivantcova, Andrei V Churakov.   

Abstract

In the title compound, C(16)H(15)F(3)N(2)O(4), the relative stereochemistry of the four stereogenic C atoms has been determined. The carb-oxy-methyl and 2-(trifluoro-meth-yl)-phenyl substituents of the pyrrolidine cycle have a cis mutual arrangement. The five-membered saturated aza-cycle adopts an envelope conformation with the N atom occupying the flap position. In the crystal, adjacent mol-ecules are combined in centrosymmetric dimers by two weak N-H⋯O hydrogen bonds.

Entities:  

Year:  2013        PMID: 23424450      PMCID: PMC3569227          DOI: 10.1107/S1600536812051471

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemistry affording bicyclic pyrrolo­[3,4-c]pyrrole-based scaffolds and structural determination, see: Kudryavtsev & Irkha (2005 ▶); Kudryavtsev (2008 ▶); Kudryavtsev & Zagulyaeva (2008 ▶); Kudryavtsev et al. (2011 ▶).

Experimental

Crystal data

C16H15F3N2O4 M = 356.30 Orthorhombic, a = 11.6168 (4) Å b = 12.7385 (5) Å c = 21.2429 (8) Å V = 3143.5 (2) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 150 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.955, T max = 0.968 28987 measured reflections 4585 independent reflections 3698 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.115 S = 1.05 4585 reflections 286 parameters All H-atom parameters refined Δρmax = 0.41 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812051471/ff2094sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051471/ff2094Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051471/ff2094Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15F3N2O4F(000) = 1472
Mr = 356.30Dx = 1.506 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 7037 reflections
a = 11.6168 (4) Åθ = 2.6–30.2°
b = 12.7385 (5) ŵ = 0.13 mm1
c = 21.2429 (8) ÅT = 150 K
V = 3143.5 (2) Å3Block, colourless
Z = 80.35 × 0.30 × 0.25 mm
Bruker SMART APEXII diffractometer4585 independent reflections
Radiation source: fine-focus sealed tube3698 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
ω scansθmax = 30.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −16→16
Tmin = 0.955, Tmax = 0.968k = −17→16
28987 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: difference Fourier map
wR(F2) = 0.115All H-atom parameters refined
S = 1.05w = 1/[σ2(Fo2) + (0.0599P)2 + 0.958P] where P = (Fo2 + 2Fc2)/3
4585 reflections(Δ/σ)max = 0.001
286 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.37232 (8)0.96741 (8)0.58121 (4)0.01832 (19)
N20.43578 (9)0.80090 (8)0.70073 (5)0.0223 (2)
O10.59707 (8)0.90401 (9)0.70207 (5)0.0323 (2)
O20.25210 (8)0.73656 (7)0.69180 (4)0.0293 (2)
O30.60527 (8)1.01872 (8)0.56746 (4)0.0261 (2)
O40.59604 (7)1.12962 (7)0.64969 (4)0.0265 (2)
F10.02339 (7)0.95536 (7)0.66222 (4)0.0360 (2)
F20.01291 (10)1.04045 (8)0.57563 (5)0.0519 (3)
F3−0.11317 (8)0.92265 (11)0.59782 (7)0.0708 (4)
C10.49344 (10)0.89519 (10)0.69792 (5)0.0218 (2)
C20.40611 (10)0.98226 (9)0.68818 (5)0.0187 (2)
C30.42693 (10)1.03976 (9)0.62520 (5)0.0182 (2)
C40.25821 (9)0.94880 (9)0.60901 (5)0.0180 (2)
C50.29053 (9)0.92447 (9)0.67894 (5)0.0187 (2)
C60.31822 (10)0.80982 (9)0.69077 (5)0.0206 (2)
C70.49500 (13)0.70166 (11)0.71063 (7)0.0309 (3)
C80.55262 (10)1.05870 (9)0.60979 (5)0.0197 (2)
C90.71865 (12)1.14732 (14)0.64520 (7)0.0352 (3)
C10−0.00083 (11)0.94442 (12)0.60086 (7)0.0342 (3)
C110.19231 (9)0.86470 (9)0.57357 (5)0.0182 (2)
C120.25319 (10)0.78516 (10)0.54317 (6)0.0238 (2)
C130.19746 (11)0.70890 (10)0.50777 (6)0.0246 (2)
C140.07863 (11)0.70963 (10)0.50236 (6)0.0241 (2)
C150.01667 (11)0.78587 (10)0.53409 (6)0.0265 (3)
C160.07221 (10)0.86314 (10)0.56912 (6)0.0224 (2)
H40.2122 (13)1.0153 (12)0.6103 (7)0.023 (4)*
H140.0394 (13)0.6570 (12)0.4770 (7)0.024 (4)*
H50.2277 (12)0.9465 (11)0.7074 (7)0.018 (3)*
H10.3693 (12)0.9935 (12)0.5427 (7)0.021 (4)*
H30.3902 (13)1.1102 (12)0.6286 (7)0.025 (4)*
H15−0.0638 (14)0.7870 (13)0.5322 (8)0.034 (4)*
H20.4071 (13)1.0292 (13)0.7231 (7)0.028 (4)*
H120.3371 (15)0.7847 (13)0.5480 (8)0.034 (4)*
H130.2416 (14)0.6568 (13)0.4868 (8)0.032 (4)*
H730.5522 (17)0.7131 (15)0.7416 (10)0.051 (5)*
H720.5263 (16)0.6773 (15)0.6724 (10)0.048 (5)*
H930.7376 (17)1.2026 (16)0.6754 (9)0.053 (5)*
H710.4386 (16)0.6518 (15)0.7264 (9)0.043 (5)*
H920.7571 (18)1.0823 (17)0.6561 (9)0.052 (6)*
H910.7395 (18)1.1612 (16)0.6019 (10)0.057 (6)*
U11U22U33U12U13U23
N10.0192 (4)0.0201 (5)0.0156 (4)−0.0034 (3)−0.0001 (3)−0.0012 (3)
N20.0226 (5)0.0219 (5)0.0223 (4)−0.0002 (4)−0.0016 (4)0.0028 (4)
O10.0209 (4)0.0408 (6)0.0351 (5)−0.0038 (4)−0.0069 (4)0.0116 (4)
O20.0306 (5)0.0260 (5)0.0313 (4)−0.0092 (4)−0.0024 (4)0.0040 (4)
O30.0235 (4)0.0328 (5)0.0219 (4)−0.0027 (4)0.0024 (3)−0.0044 (3)
O40.0226 (4)0.0287 (5)0.0282 (4)−0.0085 (4)0.0013 (3)−0.0080 (4)
F10.0303 (4)0.0427 (5)0.0349 (4)0.0047 (3)0.0050 (3)−0.0139 (4)
F20.0706 (7)0.0358 (5)0.0493 (6)0.0292 (5)−0.0191 (5)−0.0091 (4)
F30.0184 (4)0.0833 (8)0.1107 (10)0.0122 (5)−0.0119 (5)−0.0622 (8)
C10.0222 (5)0.0272 (6)0.0162 (5)−0.0026 (4)−0.0030 (4)0.0019 (4)
C20.0199 (5)0.0206 (5)0.0157 (4)−0.0035 (4)0.0002 (4)−0.0033 (4)
C30.0191 (5)0.0176 (5)0.0178 (4)−0.0020 (4)−0.0002 (4)−0.0017 (4)
C40.0169 (5)0.0184 (5)0.0185 (5)−0.0004 (4)0.0001 (4)−0.0024 (4)
C50.0172 (5)0.0215 (5)0.0174 (4)−0.0020 (4)0.0016 (4)−0.0021 (4)
C60.0223 (5)0.0235 (6)0.0161 (5)−0.0027 (4)0.0010 (4)0.0000 (4)
C70.0309 (7)0.0268 (7)0.0352 (7)0.0057 (5)−0.0003 (5)0.0065 (5)
C80.0207 (5)0.0195 (5)0.0189 (5)−0.0022 (4)−0.0014 (4)0.0009 (4)
C90.0232 (6)0.0457 (9)0.0367 (7)−0.0127 (6)0.0005 (5)−0.0083 (6)
C100.0202 (6)0.0376 (8)0.0448 (8)0.0082 (5)−0.0101 (5)−0.0172 (6)
C110.0182 (5)0.0191 (5)0.0174 (5)−0.0019 (4)−0.0003 (4)−0.0009 (4)
C120.0186 (5)0.0255 (6)0.0274 (5)−0.0036 (4)0.0050 (4)−0.0062 (4)
C130.0254 (6)0.0226 (6)0.0257 (5)−0.0034 (5)0.0065 (4)−0.0061 (4)
C140.0262 (6)0.0228 (6)0.0231 (5)−0.0045 (5)−0.0024 (4)−0.0039 (4)
C150.0198 (5)0.0290 (6)0.0307 (6)0.0000 (5)−0.0065 (5)−0.0059 (5)
C160.0185 (5)0.0234 (6)0.0254 (5)0.0036 (4)−0.0044 (4)−0.0048 (4)
N1—C31.4578 (14)C4—C51.5633 (15)
N1—C41.4704 (14)C4—H41.002 (15)
N1—H10.884 (15)C5—C61.5164 (17)
N2—C11.3766 (16)C5—H50.988 (14)
N2—C61.3866 (15)C7—H730.95 (2)
N2—C71.4545 (16)C7—H720.94 (2)
O1—C11.2124 (14)C7—H710.972 (19)
O2—C61.2089 (15)C9—H930.98 (2)
O3—C81.2008 (14)C9—H920.97 (2)
O4—C81.3375 (14)C9—H910.97 (2)
O4—C91.4451 (15)C10—C161.4990 (17)
F1—C101.3406 (17)C11—C121.3942 (16)
F2—C101.3452 (19)C11—C161.3984 (15)
F3—C101.3357 (16)C12—C131.3886 (16)
C1—C21.5173 (17)C12—H120.980 (17)
C2—C51.5437 (15)C13—C141.3852 (17)
C2—C31.5444 (15)C13—H130.950 (17)
C2—H20.953 (16)C14—C151.3842 (18)
C3—C81.5157 (16)C14—H140.973 (15)
C3—H30.997 (16)C15—C161.3923 (17)
C4—C111.5168 (15)C15—H150.936 (17)
C3—N1—C4103.70 (8)N2—C7—H72110.1 (12)
C3—N1—H1112.0 (10)H73—C7—H72112.3 (16)
C4—N1—H1113.3 (9)N2—C7—H71107.4 (11)
C1—N2—C6113.64 (10)H73—C7—H71109.5 (16)
C1—N2—C7122.31 (11)H72—C7—H71110.0 (16)
C6—N2—C7124.00 (11)O3—C8—O4124.67 (11)
C8—O4—C9115.80 (10)O3—C8—C3125.80 (10)
O1—C1—N2124.12 (12)O4—C8—C3109.51 (9)
O1—C1—C2127.31 (11)O4—C9—H93106.9 (12)
N2—C1—C2108.57 (10)O4—C9—H92107.7 (12)
C1—C2—C5104.50 (9)H93—C9—H92110.8 (17)
C1—C2—C3111.11 (9)O4—C9—H91109.7 (12)
C5—C2—C3104.61 (9)H93—C9—H91115.8 (17)
C1—C2—H2110.2 (10)H92—C9—H91105.6 (17)
C5—C2—H2114.1 (10)F3—C10—F1105.89 (13)
C3—C2—H2112.0 (10)F3—C10—F2106.58 (12)
N1—C3—C8112.42 (9)F1—C10—F2105.55 (11)
N1—C3—C2100.80 (9)F3—C10—C16112.82 (11)
C8—C3—C2114.43 (9)F1—C10—C16112.98 (11)
N1—C3—H3115.4 (9)F2—C10—C16112.44 (13)
C8—C3—H3106.6 (9)C12—C11—C16117.67 (10)
C2—C3—H3107.3 (9)C12—C11—C4119.15 (10)
N1—C4—C11111.69 (9)C16—C11—C4123.17 (10)
N1—C4—C5101.36 (8)C13—C12—C11121.52 (11)
C11—C4—C5116.93 (9)C13—C12—H12121.0 (10)
N1—C4—H4110.8 (9)C11—C12—H12117.4 (10)
C11—C4—H4109.9 (9)C14—C13—C12120.32 (11)
C5—C4—H4105.7 (8)C14—C13—H13120.2 (10)
C6—C5—C2104.70 (9)C12—C13—H13119.4 (10)
C6—C5—C4113.54 (9)C15—C14—C13118.85 (11)
C2—C5—C4103.61 (9)C15—C14—H14120.6 (9)
C6—C5—H5109.2 (8)C13—C14—H14120.5 (9)
C2—C5—H5115.4 (8)C14—C15—C16121.01 (11)
C4—C5—H5110.4 (8)C14—C15—H15120.6 (10)
O2—C6—N2124.03 (11)C16—C15—H15118.4 (10)
O2—C6—C5127.72 (11)C15—C16—C11120.57 (11)
N2—C6—C5108.25 (9)C15—C16—C10117.79 (11)
N2—C7—H73107.4 (12)C11—C16—C10121.63 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.884 (15)2.363 (15)3.1738 (13)152.5 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O3i 0.884 (15)2.363 (15)3.1738 (13)152.5 (13)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(1RS,3RS,3aRS,6aSR)-5-Benzyl-4,6-dioxo-3-phenyl-octa-hydro-pyrrolo-[3,4-c]pyrrol-1-yl]acetamide.

Authors:  Konstantin V Kudryavtsev; Andrei V Churakov; Ozdemir Dogan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-05

3.  Three-component synthesis of polysubstituted homoproline analogs.

Authors:  Konstantin V Kudryavtsev; Veronika V Irkha
Journal:  Molecules       Date:  2005-08-31       Impact factor: 4.411

  3 in total

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