Literature DB >> 22199707

2-[(1RS,3RS,3aRS,6aSR)-5-Benzyl-4,6-dioxo-3-phenyl-octa-hydro-pyrrolo-[3,4-c]pyrrol-1-yl]acetamide.

Konstantin V Kudryavtsev, Andrei V Churakov, Ozdemir Dogan.   

Abstract

In the title compound, C(21)H(21)N(3)O(3), the relative stereochemistry of the four stereogenic C atoms has been determined. The dihedral angle between the phenyl rings is 77.63 (7)°. In the crystal, ribbons spread along the a axis are formed by N-H⋯O hydrogen bonds. C-H⋯π inter-actions also occur.

Entities:  

Year:  2011        PMID: 22199707      PMCID: PMC3238854          DOI: 10.1107/S1600536811045181

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to chemistry affording polycyclic pyrrolidine-based scaffolds, see: Kudryavtsev & Irkha (2005 ▶); Kudryavtsev (2008 ▶, 2011 ▶).

Experimental

Crystal data

C21H21N3O3 M = 363.41 Triclinic, a = 9.101 (5) Å b = 9.270 (5) Å c = 12.945 (5) Å α = 103.73 (4)° β = 92.30 (4)° γ = 113.94 (4)° V = 958.1 (8) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.50 × 0.40 × 0.30 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 4399 measured reflections 3561 independent reflections 2309 reflections with I > 2σ(I) R int = 0.011 2 standard reflections every 120 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.108 S = 1.02 3561 reflections 329 parameters All H-atom parameters refined Δρmax = 0.23 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CAD4 (Schagen et al., 1988 ▶); cell refinement: CAD4; data reduction: XCAD4 (Harms, 1997 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045181/ff2039sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045181/ff2039Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811045181/ff2039Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H21N3O3Z = 2
Mr = 363.41F(000) = 384
Triclinic, P1Dx = 1.260 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.101 (5) ÅCell parameters from 25 reflections
b = 9.270 (5) Åθ = 12–13°
c = 12.945 (5) ŵ = 0.09 mm1
α = 103.73 (4)°T = 293 K
β = 92.30 (4)°Block, colourless
γ = 113.94 (4)°0.50 × 0.40 × 0.30 mm
V = 958.1 (8) Å3
Enraf–Nonius CAD-4 diffractometerRint = 0.011
Radiation source: fine-focus sealed tubeθmax = 25.5°, θmin = 2.5°
graphiteh = −10→10
ω scansk = −11→11
4399 measured reflectionsl = −2→15
3561 independent reflections2 standard reflections every 120 min
2309 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035All H-atom parameters refined
wR(F2) = 0.108w = 1/[σ2(Fo2) + (0.0636P)2 + 0.0755P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3561 reflectionsΔρmax = 0.23 e Å3
329 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.019 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.24934 (15)0.58343 (15)0.22990 (10)0.0479 (3)
N20.22129 (15)0.92640 (17)0.28729 (10)0.0483 (3)
N30.32943 (19)1.0559 (2)−0.00733 (12)0.0609 (4)
O1−0.27577 (14)0.69214 (15)0.09260 (9)0.0641 (3)
O2−0.16268 (15)0.53957 (17)0.38310 (11)0.0802 (4)
O30.36090 (17)0.8890 (2)0.08216 (11)0.0822 (5)
C10.15214 (17)0.83233 (18)0.36351 (11)0.0422 (3)
C2−0.02806 (17)0.80608 (18)0.34669 (11)0.0425 (3)
C3−0.15032 (18)0.6298 (2)0.32723 (12)0.0504 (4)
C4−0.20472 (17)0.70517 (18)0.17794 (11)0.0441 (3)
C5−0.05359 (16)0.84700 (18)0.24194 (11)0.0399 (3)
C60.10000 (17)0.85783 (19)0.19148 (11)0.0419 (3)
C70.13948 (19)0.9617 (2)0.11336 (14)0.0480 (4)
C80.28660 (18)0.9660 (2)0.06133 (12)0.0504 (4)
C9−0.3871 (2)0.4207 (2)0.18643 (16)0.0583 (4)
C10−0.54238 (19)0.41544 (18)0.22548 (13)0.0510 (4)
C11−0.6492 (2)0.4469 (2)0.16611 (15)0.0647 (5)
C12−0.7917 (3)0.4421 (3)0.2033 (2)0.0843 (7)
C13−0.8263 (3)0.4063 (3)0.2991 (2)0.0888 (7)
C14−0.7207 (3)0.3752 (3)0.3577 (2)0.0867 (7)
C15−0.5794 (3)0.3789 (2)0.32126 (16)0.0691 (5)
C160.23862 (16)0.91778 (18)0.47794 (11)0.0410 (3)
C170.34576 (19)1.0818 (2)0.50956 (13)0.0510 (4)
C180.4222 (2)1.1578 (2)0.61503 (15)0.0604 (4)
C190.3912 (2)1.0709 (3)0.69041 (14)0.0607 (5)
C200.2857 (2)0.9079 (3)0.65957 (14)0.0651 (5)
C210.2094 (2)0.8303 (2)0.55396 (13)0.0559 (4)
H10.1496 (17)0.7255 (19)0.3441 (11)0.043 (4)*
H60.0843 (17)0.7458 (19)0.1533 (11)0.045 (4)*
H720.045 (2)0.917 (2)0.0574 (14)0.060 (5)*
H5−0.0619 (17)0.9502 (18)0.2500 (11)0.041 (4)*
H22−0.0542 (19)0.874 (2)0.4050 (13)0.054 (4)*
H170.369 (2)1.143 (2)0.4586 (14)0.062 (5)*
H710.158 (2)1.071 (2)0.1478 (14)0.063 (5)*
H210.135 (2)0.718 (2)0.5356 (14)0.068 (5)*
H92−0.356 (2)0.339 (2)0.2133 (14)0.070 (5)*
H180.497 (2)1.268 (2)0.6354 (15)0.075 (6)*
H91−0.397 (2)0.400 (2)0.1100 (16)0.072 (6)*
H20.308 (2)0.920 (2)0.2746 (13)0.060 (5)*
H190.450 (2)1.126 (2)0.7648 (17)0.083 (6)*
H320.275 (2)1.114 (2)−0.0222 (15)0.074 (6)*
H11−0.622 (2)0.479 (2)0.1011 (16)0.076 (6)*
H15−0.502 (3)0.348 (3)0.3604 (17)0.099 (7)*
H200.262 (2)0.843 (2)0.7129 (17)0.085 (6)*
H310.423 (3)1.069 (2)−0.0340 (16)0.082 (6)*
H14−0.748 (3)0.347 (3)0.4305 (19)0.111 (8)*
H12−0.858 (3)0.462 (3)0.1610 (19)0.103 (8)*
H13−0.926 (3)0.398 (3)0.323 (2)0.111 (8)*
U11U22U33U12U13U23
N10.0463 (7)0.0459 (7)0.0468 (7)0.0128 (6)0.0111 (6)0.0166 (6)
N20.0359 (7)0.0718 (9)0.0450 (7)0.0238 (6)0.0155 (5)0.0272 (6)
N30.0601 (9)0.0864 (11)0.0618 (9)0.0404 (8)0.0319 (7)0.0461 (8)
O10.0597 (7)0.0739 (8)0.0508 (7)0.0174 (6)0.0008 (5)0.0249 (6)
O20.0680 (8)0.0850 (9)0.0834 (9)0.0099 (7)0.0072 (7)0.0579 (8)
O30.0839 (9)0.1354 (12)0.0919 (10)0.0783 (9)0.0596 (8)0.0819 (9)
C10.0432 (8)0.0473 (9)0.0417 (8)0.0220 (7)0.0146 (6)0.0164 (7)
C20.0403 (8)0.0511 (8)0.0374 (8)0.0194 (7)0.0138 (6)0.0138 (7)
C30.0455 (8)0.0585 (9)0.0492 (9)0.0169 (7)0.0150 (7)0.0268 (8)
C40.0425 (8)0.0514 (8)0.0413 (8)0.0204 (7)0.0123 (6)0.0166 (7)
C50.0391 (7)0.0436 (8)0.0435 (8)0.0205 (6)0.0150 (6)0.0172 (6)
C60.0415 (8)0.0505 (9)0.0424 (8)0.0240 (7)0.0171 (6)0.0191 (7)
C70.0434 (9)0.0611 (10)0.0488 (9)0.0246 (8)0.0156 (7)0.0261 (8)
C80.0497 (9)0.0702 (10)0.0435 (8)0.0296 (8)0.0173 (7)0.0288 (8)
C90.0572 (10)0.0448 (9)0.0604 (11)0.0109 (8)0.0126 (8)0.0115 (8)
C100.0520 (9)0.0370 (8)0.0525 (9)0.0090 (7)0.0098 (7)0.0101 (7)
C110.0676 (11)0.0618 (11)0.0554 (10)0.0225 (9)0.0022 (9)0.0105 (9)
C120.0716 (14)0.0691 (13)0.1083 (18)0.0337 (11)−0.0010 (13)0.0137 (12)
C130.0777 (15)0.0622 (12)0.130 (2)0.0300 (11)0.0492 (15)0.0267 (13)
C140.0970 (17)0.0768 (14)0.0990 (17)0.0351 (13)0.0525 (14)0.0445 (13)
C150.0751 (12)0.0611 (11)0.0751 (13)0.0222 (9)0.0264 (10)0.0363 (10)
C160.0377 (7)0.0511 (8)0.0428 (8)0.0245 (6)0.0125 (6)0.0170 (6)
C170.0521 (9)0.0527 (9)0.0531 (9)0.0243 (8)0.0122 (7)0.0192 (8)
C180.0535 (10)0.0590 (11)0.0627 (11)0.0251 (9)0.0055 (8)0.0048 (9)
C190.0530 (10)0.0871 (14)0.0468 (9)0.0407 (10)0.0049 (8)0.0080 (9)
C200.0699 (12)0.0902 (14)0.0494 (10)0.0406 (11)0.0139 (9)0.0321 (10)
C210.0582 (10)0.0600 (11)0.0508 (9)0.0211 (9)0.0101 (8)0.0250 (8)
N1—C41.379 (2)C9—C101.506 (2)
N1—C31.386 (2)C9—H921.030 (18)
N1—C91.473 (2)C9—H910.955 (19)
N2—C61.452 (2)C10—C111.377 (3)
N2—C11.4639 (19)C10—C151.381 (2)
N2—H20.832 (18)C11—C121.389 (3)
N3—C81.324 (2)C11—H110.97 (2)
N3—H320.91 (2)C12—C131.374 (4)
N3—H310.90 (2)C12—H120.90 (2)
O1—C41.2120 (18)C13—C141.361 (4)
O2—C31.2053 (19)C13—H130.95 (3)
O3—C81.2281 (19)C14—C151.378 (3)
C1—C161.511 (2)C14—H141.05 (2)
C1—C21.555 (2)C15—H151.01 (2)
C1—H10.953 (15)C16—C171.378 (2)
C2—C31.509 (2)C16—C211.386 (2)
C2—C51.525 (2)C17—C181.384 (3)
C2—H220.966 (16)C17—H170.943 (18)
C4—C51.494 (2)C18—C191.375 (3)
C5—C61.543 (2)C18—H180.93 (2)
C5—H50.972 (14)C19—C201.368 (3)
C6—C71.513 (2)C19—H190.99 (2)
C6—H60.987 (15)C20—C211.386 (3)
C7—C81.513 (2)C20—H201.00 (2)
C7—H720.978 (18)C21—H210.944 (19)
C7—H710.944 (19)
C4—N1—C3112.94 (13)O3—C8—N3122.40 (15)
C4—N1—C9123.65 (14)O3—C8—C7121.10 (13)
C3—N1—C9123.41 (14)N3—C8—C7116.50 (14)
C6—N2—C1107.05 (12)N1—C9—C10112.20 (14)
C6—N2—H2112.4 (12)N1—C9—H92106.3 (10)
C1—N2—H2109.2 (12)C10—C9—H92109.0 (10)
C8—N3—H32122.6 (12)N1—C9—H91105.6 (11)
C8—N3—H31118.2 (12)C10—C9—H91111.2 (11)
H32—N3—H31118.8 (17)H92—C9—H91112.5 (15)
N2—C1—C16113.54 (13)C11—C10—C15119.19 (18)
N2—C1—C2101.61 (11)C11—C10—C9120.46 (16)
C16—C1—C2114.38 (12)C15—C10—C9120.35 (17)
N2—C1—H1112.9 (9)C10—C11—C12119.8 (2)
C16—C1—H1108.1 (8)C10—C11—H11120.2 (12)
C2—C1—H1106.1 (9)C12—C11—H11119.9 (12)
C3—C2—C5104.30 (13)C13—C12—C11120.3 (2)
C3—C2—C1114.00 (13)C13—C12—H12123.5 (16)
C5—C2—C1106.24 (11)C11—C12—H12116.2 (16)
C3—C2—H22108.6 (9)C14—C13—C12119.9 (2)
C5—C2—H22110.1 (9)C14—C13—H13120.0 (15)
C1—C2—H22113.2 (9)C12—C13—H13120.1 (15)
O2—C3—N1123.89 (15)C13—C14—C15120.3 (2)
O2—C3—C2127.97 (15)C13—C14—H14119.8 (13)
N1—C3—C2108.13 (13)C15—C14—H14119.9 (13)
O1—C4—N1124.11 (15)C14—C15—C10120.5 (2)
O1—C4—C5127.43 (14)C14—C15—H15122.1 (12)
N1—C4—C5108.40 (13)C10—C15—H15117.3 (12)
C4—C5—C2105.30 (12)C17—C16—C21118.60 (15)
C4—C5—C6112.59 (12)C17—C16—C1121.77 (14)
C2—C5—C6103.62 (11)C21—C16—C1119.62 (14)
C4—C5—H5111.1 (8)C16—C17—C18120.74 (17)
C2—C5—H5115.4 (8)C16—C17—H17119.8 (11)
C6—C5—H5108.6 (8)C18—C17—H17119.4 (11)
N2—C6—C7113.43 (13)C19—C18—C17120.39 (18)
N2—C6—C5100.79 (11)C19—C18—H18119.3 (12)
C7—C6—C5113.69 (12)C17—C18—H18120.3 (12)
N2—C6—H6111.2 (8)C20—C19—C18119.24 (17)
C7—C6—H6108.8 (8)C20—C19—H19121.2 (12)
C5—C6—H6108.7 (8)C18—C19—H19119.5 (12)
C6—C7—C8113.10 (13)C19—C20—C21120.81 (18)
C6—C7—H72108.4 (9)C19—C20—H20120.4 (12)
C8—C7—H72109.2 (10)C21—C20—H20118.8 (12)
C6—C7—H71111.0 (10)C20—C21—C16120.22 (18)
C8—C7—H71108.4 (11)C20—C21—H21118.8 (11)
H72—C7—H71106.6 (14)C16—C21—H21121.0 (11)
C6—N2—C1—C16−162.41 (12)C4—C5—C6—C790.44 (16)
C6—N2—C1—C2−39.10 (14)C2—C5—C6—C7−156.31 (13)
N2—C1—C2—C3129.33 (13)N2—C6—C7—C867.80 (18)
C16—C1—C2—C3−107.94 (15)C5—C6—C7—C8−177.81 (13)
N2—C1—C2—C515.04 (14)C6—C7—C8—O30.9 (2)
C16—C1—C2—C5137.77 (13)C6—C7—C8—N3−179.38 (15)
C4—N1—C3—O2−176.19 (15)C4—N1—C9—C10−92.44 (19)
C9—N1—C3—O23.4 (2)C3—N1—C9—C1087.97 (19)
C4—N1—C3—C22.69 (17)N1—C9—C10—C1192.8 (2)
C9—N1—C3—C2−177.68 (13)N1—C9—C10—C15−87.3 (2)
C5—C2—C3—O2171.11 (16)C15—C10—C11—C120.2 (3)
C1—C2—C3—O255.7 (2)C9—C10—C11—C12−179.83 (16)
C5—C2—C3—N1−7.71 (15)C10—C11—C12—C130.1 (3)
C1—C2—C3—N1−123.14 (13)C11—C12—C13—C14−0.1 (3)
C3—N1—C4—O1−178.84 (14)C12—C13—C14—C15−0.2 (4)
C9—N1—C4—O11.5 (2)C13—C14—C15—C100.5 (3)
C3—N1—C4—C53.74 (16)C11—C10—C15—C14−0.5 (3)
C9—N1—C4—C5−175.89 (13)C9—C10—C15—C14179.51 (17)
O1—C4—C5—C2174.29 (15)N2—C1—C16—C1713.95 (19)
N1—C4—C5—C2−8.41 (15)C2—C1—C16—C17−102.06 (16)
O1—C4—C5—C6−73.49 (19)N2—C1—C16—C21−166.52 (13)
N1—C4—C5—C6103.82 (14)C2—C1—C16—C2177.47 (17)
C3—C2—C5—C49.55 (14)C21—C16—C17—C18−0.2 (2)
C1—C2—C5—C4130.31 (12)C1—C16—C17—C18179.33 (13)
C3—C2—C5—C6−108.87 (13)C16—C17—C18—C19−0.6 (2)
C1—C2—C5—C611.89 (14)C17—C18—C19—C200.9 (3)
C1—N2—C6—C7168.92 (12)C18—C19—C20—C21−0.4 (3)
C1—N2—C6—C547.03 (14)C19—C20—C21—C16−0.4 (3)
C4—C5—C6—N2−147.85 (12)C17—C16—C21—C200.7 (2)
C2—C5—C6—N2−34.60 (14)C1—C16—C21—C20−178.86 (14)
Cg1 is the centroid of the C10–C15 phenyl ring.
D—H···AD—HH···AD···AD—H···A
N3—H32···O1i0.91 (2)2.194 (19)3.003 (2)147.3 (16)
N3—H31···O3ii0.90 (2)2.00 (2)2.903 (2)175.7 (18)
C18—H18···Cg1iii0.93 (2)2.713.627166.5
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C10–C15 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H32⋯O1i0.91 (2)2.194 (19)3.003 (2)147.3 (16)
N3—H31⋯O3ii0.90 (2)2.00 (2)2.903 (2)175.7 (18)
C18—H18⋯Cg1iii0.93 (2)2.713.627166.5

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Three-component synthesis of polysubstituted homoproline analogs.

Authors:  Konstantin V Kudryavtsev; Veronika V Irkha
Journal:  Molecules       Date:  2005-08-31       Impact factor: 4.411

  2 in total
  1 in total

1.  (1SR,3RS,3aSR,6aRS)-Methyl 5-methyl-4,6-dioxo-3-[2-(trifluoro-meth-yl)phen-yl]octa-hydro-pyrrolo-[3,4-c]pyrrole-1-carboxyl-ate.

Authors:  Konstantin V Kudryavtsev; Polina M Ivantcova; Andrei V Churakov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-04
  1 in total

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