Literature DB >> 23424436

Diaqua-bis-(1H-imidazole-4-carboxyl-ato-κ(2)N(3),O)cobalt(II).

Beñat Artetxe1, Leire San Felices, Aroa Pache, Santiago Reinoso, Juan M Gutiérrez-Zorrilla.   

Abstract

The title compound, [Co(C(4)H(3)N(2)O(2))(2)(H(2)O)(2)], contains a Co(II) cation on a twofold rotation axis, exhibiting a distorted octa-hedral coordination geometry. The equatorial plane is formed by two N,O-bidentate 1H-imidazole-4-carboxyl-ate ligands and the axial positions are occupied by water mol-ecules. The crystal packing consists of a three-dimensional network stabilized by O-H⋯O and N-H⋯O hydrogen bonds, together with weak π-π inter-actions [centroid-centroid distance = 3.577 (2) Å] between the imidazole rings.

Entities:  

Year:  2013        PMID: 23424436      PMCID: PMC3569192          DOI: 10.1107/S1600536813000330

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isostructural zinc(II) and cadmium(II) complexes, see: Yin et al. (2009 ▶); Shuai et al. (2011 ▶). For related homoleptic compounds, see: Kondo et al. (2003 ▶); Gryz et al. (2007 ▶); Zheng et al. (2011 ▶).

Experimental

Crystal data

[Co(C4H3N2O2)2(H2O)2] M = 317.13 Orthorhombic, a = 7.1236 (16) Å b = 11.6305 (2) Å c = 13.5496 (4) Å V = 1122.6 (3) Å3 Z = 4 Mo Kα radiation μ = 1.56 mm−1 T = 100 K 0.09 × 0.04 × 0.03 mm

Data collection

Agilent SuperNova (single source at offset) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.947, T max = 1.000 2396 measured reflections 1162 independent reflections 1025 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.063 S = 1.08 1162 reflections 95 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813000330/zj2099sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000330/zj2099Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C4H3N2O2)2(H2O)2]F(000) = 644
Mr = 317.13Dx = 1.876 Mg m3
Orthorhombic, PccnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ab 2acCell parameters from 1055 reflections
a = 7.1236 (16) Åθ = 1.8–28.1°
b = 11.6305 (2) ŵ = 1.56 mm1
c = 13.5496 (4) ÅT = 100 K
V = 1122.6 (3) Å3Prism, red
Z = 40.09 × 0.04 × 0.03 mm
Agilent SuperNova (single source at offset) diffractometer1162 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1025 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.018
Detector resolution: 16.2439 pixels mm-1θmax = 26.5°, θmin = 3.0°
ω scansh = −8→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −10→14
Tmin = 0.947, Tmax = 1.000l = −5→17
2396 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: difference Fourier map
wR(F2) = 0.063H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0201P)2 + 1.0008P] where P = (Fo2 + 2Fc2)/3
1162 reflections(Δ/σ)max < 0.001
95 parametersΔρmax = 0.32 e Å3
2 restraintsΔρmin = −0.25 e Å3
Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.35.19 (release 27-10-2011 CrysAlis171 .NET) (compiled Oct 27 2011,15:02:11). Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.750.250.13009 (3)0.00874 (13)
O1W0.8972 (2)0.09575 (13)0.15593 (11)0.0140 (3)
O10.54278 (18)0.17114 (12)0.22690 (10)0.0120 (3)
O20.26134 (18)0.08371 (12)0.22474 (10)0.0113 (3)
N30.5553 (2)0.18870 (15)0.02894 (12)0.0107 (4)
N10.3584 (2)0.12877 (15)−0.08496 (13)0.0125 (4)
H10.30940.1157−0.14350.015*
C40.4058 (3)0.13338 (17)0.07356 (15)0.0098 (4)
C60.4028 (3)0.12899 (16)0.18291 (15)0.0096 (4)
C50.2836 (3)0.09571 (18)0.00325 (15)0.0118 (4)
H50.16970.05490.01360.014*
C20.5204 (3)0.18489 (18)−0.06678 (15)0.0123 (4)
H20.59890.2173−0.11620.015*
H1WA1.007 (3)0.099 (3)0.180 (2)0.047 (9)*
H1WB0.847 (4)0.050 (2)0.1974 (17)0.039 (9)*
U11U22U33U12U13U23
Co10.0080 (2)0.0098 (2)0.0084 (2)−0.00165 (15)00
O1W0.0110 (8)0.0146 (8)0.0163 (8)−0.0018 (6)−0.0014 (7)0.0039 (7)
O10.0102 (7)0.0140 (7)0.0116 (7)−0.0016 (6)−0.0011 (6)−0.0008 (6)
O20.0087 (7)0.0137 (7)0.0116 (7)−0.0007 (6)0.0021 (6)0.0019 (6)
N30.0095 (8)0.0111 (9)0.0115 (8)−0.0003 (7)0.0013 (7)0.0009 (7)
N10.0130 (9)0.0151 (9)0.0094 (8)−0.0007 (7)−0.0031 (7)−0.0005 (7)
C40.0101 (10)0.0072 (10)0.0120 (10)0.0000 (8)0.0007 (8)0.0006 (8)
C60.0105 (10)0.0071 (9)0.0113 (10)0.0041 (8)0.0009 (8)0.0000 (8)
C50.0122 (10)0.0113 (10)0.0118 (9)−0.0007 (8)0.0012 (9)0.0001 (9)
C20.0121 (10)0.0137 (11)0.0111 (10)−0.0008 (8)0.0005 (8)0.0009 (9)
Co1—N32.0763 (17)N3—C21.321 (3)
Co1—N3i2.0763 (17)N3—C41.383 (2)
Co1—O1Wi2.1074 (15)N1—C21.349 (3)
Co1—O1W2.1074 (15)N1—C51.364 (3)
Co1—O1i2.1774 (14)N1—H10.88
Co1—O12.1774 (14)C4—C51.363 (3)
O1W—H1WA0.849 (17)C4—C61.483 (3)
O1W—H1WB0.853 (17)C5—H50.95
O1—C61.261 (2)C2—H20.95
O2—C61.271 (2)
N3—Co1—N3i97.39 (9)C2—N3—C4105.60 (17)
N3—Co1—O1Wi93.98 (6)C2—N3—Co1141.72 (15)
N3i—Co1—O1Wi98.62 (6)C4—N3—Co1112.67 (13)
N3—Co1—O1W98.62 (6)C2—N1—C5108.11 (17)
N3i—Co1—O1W93.98 (6)C2—N1—H1125.9
O1Wi—Co1—O1W160.87 (9)C5—N1—H1125.9
N3—Co1—O1i174.42 (6)C5—C4—N3109.62 (18)
N3i—Co1—O1i78.47 (6)C5—C4—C6132.70 (18)
O1Wi—Co1—O1i83.04 (6)N3—C4—C6117.64 (17)
O1W—Co1—O1i85.47 (6)O1—C6—O2125.27 (18)
N3—Co1—O178.47 (6)O1—C6—C4116.60 (17)
N3i—Co1—O1174.42 (6)O2—C6—C4118.13 (17)
O1Wi—Co1—O185.47 (6)C4—C5—N1105.79 (17)
O1W—Co1—O183.04 (6)C4—C5—H5127.1
O1i—Co1—O1105.91 (7)N1—C5—H5127.1
Co1—O1W—H1WA119 (2)N3—C2—N1110.87 (18)
Co1—O1W—H1WB115.7 (19)N3—C2—H2124.6
H1WA—O1W—H1WB100 (3)N1—C2—H2124.6
C6—O1—Co1114.52 (12)
N3—Co1—O1—C6−1.93 (13)Co1—N3—C4—C5179.84 (13)
N3i—Co1—O1—C6−44.3 (6)C2—N3—C4—C6−177.35 (18)
O1Wi—Co1—O1—C693.08 (13)Co1—N3—C4—C61.8 (2)
O1W—Co1—O1—C6−102.24 (13)Co1—O1—C6—O2−176.57 (15)
O1i—Co1—O1—C6174.51 (15)Co1—O1—C6—C43.4 (2)
N3i—Co1—N3—C2−5.2 (2)C5—C4—C6—O1178.9 (2)
O1Wi—Co1—N3—C294.1 (2)N3—C4—C6—O1−3.6 (3)
O1W—Co1—N3—C2−100.4 (2)C5—C4—C6—O2−1.1 (3)
O1i—Co1—N3—C236.6 (7)N3—C4—C6—O2176.37 (17)
O1—Co1—N3—C2178.6 (2)N3—C4—C5—N1−0.3 (2)
N3i—Co1—N3—C4176.15 (16)C6—C4—C5—N1177.4 (2)
O1Wi—Co1—N3—C4−84.61 (14)C2—N1—C5—C4−0.2 (2)
O1W—Co1—N3—C480.96 (14)C4—N3—C2—N1−0.8 (2)
O1i—Co1—N3—C4−142.1 (6)Co1—N3—C2—N1−179.56 (16)
O1—Co1—N3—C4−0.06 (13)C5—N1—C2—N30.7 (2)
C2—N3—C4—C50.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2ii0.881.892.766 (2)172
O1W—H1WA···O2iii0.86 (2)1.91 (2)2.760 (2)171 (3)
O1W—H1WB···O2iv0.85 (2)1.98 (2)2.812 (2)167 (2)
Co1—N32.0763 (17)
Co1—O1W 2.1074 (15)
Co1—O12.1774 (14)
N3—Co1—N3i 97.39 (9)
N3—Co1—O1W 98.62 (6)
N3—Co1—O178.47 (6)
O1W—Co1—O183.04 (6)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2ii 0.881.892.766 (2)172
O1W—H1WA⋯O2iii 0.86 (2)1.91 (2)2.760 (2)171 (3)
O1W—H1WB⋯O2iv 0.85 (2)1.98 (2)2.812 (2)167 (2)

Symmetry codes: (ii) ; (iii) ; (iv) .

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