| Literature DB >> 23424419 |
Rafika Bouchene1, Sofiane Bouacida, Fadila Berrah, Ratiba Belhouas, Hocine Merazig.
Abstract
In the title compound, [Co(C(5)H(4)N(3)O(2))(2)(H(2)O)(2)], the Co(II) atom is situated on a twofold rotation axis and is N,O-chelated by two 3-amino-pyrazine-2-carboxyl-ate anions and additionally bonded to the O atoms of two water mol-ecules, leading to a slightly distorted octa-hedral coordination environment. The crystal packing is dominated by inter-molecular O-H⋯O, O-H⋯N and N-H⋯O hydrogen bonding involving the water mol-ecules and amino groups as donors and carboxyl-ate O atoms, as well as the non-coordinating heterocyclic N atoms as acceptors, resulting in a three-dimensional network. An intra-molecular N-H⋯O hydrogen bond is also observed.Entities:
Year: 2013 PMID: 23424419 PMCID: PMC3569217 DOI: 10.1107/S1600536813002183
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C5H4N3O2)2(H2O)2] | |
| Monoclinic, | Mo |
| Cell parameters from 6448 reflections | |
| θ = 3.0–38.7° | |
| µ = 1.29 mm−1 | |
| β = 91.918 (1)° | |
| Block, yellow | |
| 0.11 × 0.09 × 0.05 mm |
| Bruker APEXII CCD diffractometer | 3043 reflections with |
| Radiation source: sealed tube | |
| Graphite monochromator | θmax = 42.1°, θmin = 3.0° |
| φ and ω scans | |
| 17706 measured reflections | |
| 4800 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4800 reflections | (Δ/σ)max = 0.001 |
| 111 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.38 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 0 | 0.195326 (13) | 0.75 | 0.02207 (5) | |
| O1W | 0.19025 (11) | 0.30652 (6) | 0.76033 (6) | 0.03609 (17) | |
| H1W | 0.250 (2) | 0.3194 (11) | 0.7195 (13) | 0.054* | |
| H2W | 0.1779 (19) | 0.3585 (14) | 0.7867 (12) | 0.054* | |
| O51 | −0.18087 (10) | 0.07591 (6) | 0.76347 (5) | 0.03603 (17) | |
| O52 | −0.31276 (13) | −0.02336 (7) | 0.87118 (6) | 0.0538 (2) | |
| N1 | −0.03120 (10) | 0.18853 (6) | 0.90389 (5) | 0.02230 (13) | |
| N2 | −0.09937 (11) | 0.16410 (8) | 1.09943 (6) | 0.03211 (17) | |
| C1 | 0.04090 (12) | 0.25148 (8) | 0.97172 (6) | 0.02822 (18) | |
| H1 | 0.1164 | 0.3035 | 0.9535 | 0.034* | |
| N3 | −0.26554 (13) | 0.02032 (8) | 1.06349 (7) | 0.0453 (2) | |
| H3A | −0.2827 | 0.0138 | 1.1249 | 0.054* | |
| H3B | −0.3112 | −0.0232 | 1.0224 | 0.054* | |
| C2 | 0.00267 (13) | 0.23880 (9) | 1.06893 (7) | 0.0327 (2) | |
| H2 | 0.0508 | 0.2847 | 1.1148 | 0.039* | |
| C3 | −0.16811 (12) | 0.09790 (7) | 1.03189 (7) | 0.02792 (18) | |
| C4 | −0.13532 (11) | 0.11308 (7) | 0.93095 (6) | 0.02309 (15) | |
| C5 | −0.21616 (13) | 0.04957 (8) | 0.84893 (7) | 0.03098 (19) |
| Co1 | 0.02920 (9) | 0.02103 (9) | 0.01636 (7) | 0 | 0.00654 (5) | 0 |
| O1W | 0.0437 (4) | 0.0371 (4) | 0.0284 (3) | −0.0159 (3) | 0.0152 (3) | −0.0072 (3) |
| O51 | 0.0514 (4) | 0.0342 (4) | 0.0230 (3) | −0.0146 (3) | 0.0090 (3) | −0.0052 (3) |
| O52 | 0.0808 (6) | 0.0417 (5) | 0.0405 (4) | −0.0356 (4) | 0.0263 (4) | −0.0128 (4) |
| N1 | 0.0249 (3) | 0.0230 (3) | 0.0193 (3) | 0.0009 (3) | 0.0057 (2) | 0.0015 (2) |
| N2 | 0.0378 (4) | 0.0383 (4) | 0.0207 (3) | 0.0010 (4) | 0.0071 (3) | 0.0019 (3) |
| C1 | 0.0285 (4) | 0.0338 (5) | 0.0225 (4) | −0.0058 (4) | 0.0025 (3) | 0.0005 (3) |
| N3 | 0.0686 (7) | 0.0378 (5) | 0.0307 (4) | −0.0167 (5) | 0.0196 (4) | 0.0032 (4) |
| C3 | 0.0343 (4) | 0.0259 (4) | 0.0242 (4) | 0.0031 (3) | 0.0112 (3) | 0.0041 (3) |
| C5 | 0.0410 (5) | 0.0242 (4) | 0.0284 (4) | −0.0072 (4) | 0.0117 (4) | −0.0050 (3) |
| C4 | 0.0285 (4) | 0.0202 (4) | 0.0210 (3) | 0.0010 (3) | 0.0083 (3) | 0.0014 (3) |
| C2 | 0.0348 (5) | 0.0411 (6) | 0.0221 (4) | −0.0031 (4) | 0.0007 (3) | −0.0024 (4) |
| Co1—O1W | 2.0648 (8) | N1—C1 | 1.3390 (11) |
| Co1—O1Wi | 2.0648 (8) | N2—C2 | 1.3230 (14) |
| Co1—O51 | 2.0979 (7) | N2—C3 | 1.3515 (13) |
| Co1—O51i | 2.0979 (7) | C1—C2 | 1.3834 (13) |
| Co1—N1i | 2.1303 (7) | C1—H1 | 0.93 |
| Co1—N1 | 2.1303 (7) | N3—C3 | 1.3329 (13) |
| O1W—H1W | 0.760 (18) | N3—H3A | 0.86 |
| O1W—H2W | 0.763 (18) | N3—H3B | 0.86 |
| O51—C5 | 1.2568 (12) | C3—C4 | 1.4270 (12) |
| O52—C5 | 1.2460 (12) | C5—C4 | 1.5078 (13) |
| N1—C4 | 1.3252 (11) | C2—H2 | 0.93 |
| O1W—Co1—O1Wi | 93.31 (5) | C1—N1—Co1 | 126.91 (6) |
| O1W—Co1—O51 | 170.46 (3) | C2—N2—C3 | 117.88 (8) |
| O1Wi—Co1—O51 | 90.57 (4) | N1—C1—C2 | 119.71 (9) |
| O1W—Co1—O51i | 90.57 (4) | N1—C1—H1 | 120.1 |
| O1Wi—Co1—O51i | 170.46 (3) | C2—C1—H1 | 120.1 |
| O51—Co1—O51i | 86.97 (5) | C3—N3—H3A | 120 |
| O1W—Co1—N1i | 89.31 (3) | C3—N3—H3B | 120 |
| O1Wi—Co1—N1i | 93.89 (3) | H3A—N3—H3B | 120 |
| O51—Co1—N1i | 99.13 (3) | N3—C3—N2 | 117.61 (8) |
| O51i—Co1—N1i | 77.43 (3) | N3—C3—C4 | 122.66 (9) |
| O1W—Co1—N1 | 93.89 (3) | N2—C3—C4 | 119.73 (8) |
| O1Wi—Co1—N1 | 89.31 (3) | O52—C5—O51 | 125.65 (9) |
| O51—Co1—N1 | 77.43 (3) | O52—C5—C4 | 117.72 (8) |
| O51i—Co1—N1 | 99.13 (3) | O51—C5—C4 | 116.63 (8) |
| N1i—Co1—N1 | 175.34 (4) | N1—C4—C3 | 120.19 (8) |
| Co1—O1W—H1W | 124.2 (12) | N1—C4—C5 | 115.59 (7) |
| Co1—O1W—H2W | 121.7 (11) | C3—C4—C5 | 124.20 (8) |
| H1W—O1W—H2W | 104.7 (15) | N2—C2—C1 | 122.81 (9) |
| C5—O51—Co1 | 116.60 (6) | N2—C2—H2 | 118.6 |
| C4—N1—C1 | 119.58 (7) | C1—C2—H2 | 118.6 |
| C4—N1—Co1 | 113.50 (6) | ||
| O1Wi—Co1—O51—C5 | −93.84 (8) | Co1—O51—C5—O52 | −175.74 (10) |
| O51i—Co1—O51—C5 | 95.39 (8) | Co1—O51—C5—C4 | 4.97 (12) |
| N1i—Co1—O51—C5 | 172.13 (8) | C1—N1—C4—C3 | −1.05 (13) |
| N1—Co1—O51—C5 | −4.67 (7) | Co1—N1—C4—C3 | 179.46 (6) |
| O1W—Co1—N1—C4 | −172.54 (6) | C1—N1—C4—C5 | 177.36 (8) |
| O1Wi—Co1—N1—C4 | 94.19 (6) | Co1—N1—C4—C5 | −2.13 (10) |
| O51—Co1—N1—C4 | 3.45 (6) | N3—C3—C4—N1 | −176.88 (9) |
| O51i—Co1—N1—C4 | −81.34 (6) | N2—C3—C4—N1 | 3.34 (13) |
| O1W—Co1—N1—C1 | 8.01 (8) | N3—C3—C4—C5 | 4.85 (15) |
| O1Wi—Co1—N1—C1 | −85.25 (8) | N2—C3—C4—C5 | −174.93 (9) |
| O51—Co1—N1—C1 | −175.99 (8) | O52—C5—C4—N1 | 178.82 (10) |
| O51i—Co1—N1—C1 | 99.22 (8) | O51—C5—C4—N1 | −1.84 (13) |
| C4—N1—C1—C2 | −1.63 (14) | O52—C5—C4—C3 | −2.84 (15) |
| Co1—N1—C1—C2 | 177.78 (7) | O51—C5—C4—C3 | 176.50 (9) |
| C2—N2—C3—N3 | 177.46 (9) | C3—N2—C2—C1 | 0.07 (16) |
| C2—N2—C3—C4 | −2.76 (14) | N1—C1—C2—N2 | 2.23 (16) |
| H··· | ||||
| O1 | 0.761 (18) | 2.070 (18) | 2.8254 (12) | 172.2 (17) |
| O1 | 0.762 (18) | 1.898 (17) | 2.6470 (12) | 167.1 (16) |
| N3—H3 | 0.86 | 2.33 | 3.0525 (12) | 141 |
| N3—H3 | 0.86 | 2.07 | 2.7036 (13) | 130 |
| C1—H1···O52iii | 0.93 | 2.55 | 3.4010 (13) | 153 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.761 (18) | 2.070 (18) | 2.8254 (12) | 172.2 (17) |
| O1 | 0.762 (18) | 1.898 (17) | 2.6470 (12) | 167.1 (16) |
| N3—H3 | 0.86 | 2.33 | 3.0525 (12) | 141 |
| N3—H3 | 0.86 | 2.07 | 2.7036 (13) | 130 |
Symmetry codes: (i) ; (ii) ; (iii) .