Literature DB >> 23424419

Bis(3-amino-pyrazine-2-carboxyl-ato-κ(2)N(1),O)diaqua-cobalt(II).

Rafika Bouchene1, Sofiane Bouacida, Fadila Berrah, Ratiba Belhouas, Hocine Merazig.   

Abstract

In the title compound, [Co(C(5)H(4)N(3)O(2))(2)(H(2)O)(2)], the Co(II) atom is situated on a twofold rotation axis and is N,O-chelated by two 3-amino-pyrazine-2-carboxyl-ate anions and additionally bonded to the O atoms of two water mol-ecules, leading to a slightly distorted octa-hedral coordination environment. The crystal packing is dominated by inter-molecular O-H⋯O, O-H⋯N and N-H⋯O hydrogen bonding involving the water mol-ecules and amino groups as donors and carboxyl-ate O atoms, as well as the non-coordinating heterocyclic N atoms as acceptors, resulting in a three-dimensional network. An intra-molecular N-H⋯O hydrogen bond is also observed.

Entities:  

Year:  2013        PMID: 23424419      PMCID: PMC3569217          DOI: 10.1107/S1600536813002183

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the role of N,O-coordination in the crystal structures of metal complexes with pyrazine-2-carboxyl­ate as ligand, see: Alcock et al. (1996 ▶); Dong et al. (2000 ▶); Kubota et al. (2006 ▶); Luo et al. (2004 ▶). For related pyrazine-2-carboxyl­ate cobalt(II) complexes and their applications, see: Fan et al. (2007 ▶); Liu et al. (2007 ▶); McCleverty & Meyer (2004 ▶); Shi et al. (2011 ▶); Sun et al. (2004 ▶); Tanase et al. (2006 ▶). For the influence of hydrogen bonding in related systems, see: Bouacida et al. (2007 ▶, 2009 ▶).

Experimental

Crystal data

[Co(C5H4N3O2)2(H2O)2] M = 371.19 Monoclinic, a = 7.8823 (2) Å b = 12.7467 (2) Å c = 13.6851 (3) Å β = 91.918 (1)° V = 1374.22 (5) Å3 Z = 4 Mo Kα radiation μ = 1.29 mm−1 T = 295 K 0.11 × 0.09 × 0.05 mm

Data collection

Bruker APEXII CCD diffractometer 17706 measured reflections 4800 independent reflections 3043 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.082 S = 0.92 4800 reflections 111 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: SAINT (Bruker, 2011 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813002183/wm2721sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813002183/wm2721Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C5H4N3O2)2(H2O)2]F(000) = 756
Mr = 371.19Dx = 1.794 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 7.8823 (2) ÅCell parameters from 6448 reflections
b = 12.7467 (2) Åθ = 3.0–38.7°
c = 13.6851 (3) ŵ = 1.29 mm1
β = 91.918 (1)°T = 295 K
V = 1374.22 (5) Å3Block, yellow
Z = 40.11 × 0.09 × 0.05 mm
Bruker APEXII CCD diffractometer3043 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.041
Graphite monochromatorθmax = 42.1°, θmin = 3.0°
φ and ω scansh = −14→10
17706 measured reflectionsk = −24→22
4800 independent reflectionsl = −25→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 0.92w = 1/[σ2(Fo2) + (0.0413P)2] where P = (Fo2 + 2Fc2)/3
4800 reflections(Δ/σ)max = 0.001
111 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co100.195326 (13)0.750.02207 (5)
O1W0.19025 (11)0.30652 (6)0.76033 (6)0.03609 (17)
H1W0.250 (2)0.3194 (11)0.7195 (13)0.054*
H2W0.1779 (19)0.3585 (14)0.7867 (12)0.054*
O51−0.18087 (10)0.07591 (6)0.76347 (5)0.03603 (17)
O52−0.31276 (13)−0.02336 (7)0.87118 (6)0.0538 (2)
N1−0.03120 (10)0.18853 (6)0.90389 (5)0.02230 (13)
N2−0.09937 (11)0.16410 (8)1.09943 (6)0.03211 (17)
C10.04090 (12)0.25148 (8)0.97172 (6)0.02822 (18)
H10.11640.30350.95350.034*
N3−0.26554 (13)0.02032 (8)1.06349 (7)0.0453 (2)
H3A−0.28270.01381.12490.054*
H3B−0.3112−0.02321.02240.054*
C20.00267 (13)0.23880 (9)1.06893 (7)0.0327 (2)
H20.05080.28471.11480.039*
C3−0.16811 (12)0.09790 (7)1.03189 (7)0.02792 (18)
C4−0.13532 (11)0.11308 (7)0.93095 (6)0.02309 (15)
C5−0.21616 (13)0.04957 (8)0.84893 (7)0.03098 (19)
U11U22U33U12U13U23
Co10.02920 (9)0.02103 (9)0.01636 (7)00.00654 (5)0
O1W0.0437 (4)0.0371 (4)0.0284 (3)−0.0159 (3)0.0152 (3)−0.0072 (3)
O510.0514 (4)0.0342 (4)0.0230 (3)−0.0146 (3)0.0090 (3)−0.0052 (3)
O520.0808 (6)0.0417 (5)0.0405 (4)−0.0356 (4)0.0263 (4)−0.0128 (4)
N10.0249 (3)0.0230 (3)0.0193 (3)0.0009 (3)0.0057 (2)0.0015 (2)
N20.0378 (4)0.0383 (4)0.0207 (3)0.0010 (4)0.0071 (3)0.0019 (3)
C10.0285 (4)0.0338 (5)0.0225 (4)−0.0058 (4)0.0025 (3)0.0005 (3)
N30.0686 (7)0.0378 (5)0.0307 (4)−0.0167 (5)0.0196 (4)0.0032 (4)
C30.0343 (4)0.0259 (4)0.0242 (4)0.0031 (3)0.0112 (3)0.0041 (3)
C50.0410 (5)0.0242 (4)0.0284 (4)−0.0072 (4)0.0117 (4)−0.0050 (3)
C40.0285 (4)0.0202 (4)0.0210 (3)0.0010 (3)0.0083 (3)0.0014 (3)
C20.0348 (5)0.0411 (6)0.0221 (4)−0.0031 (4)0.0007 (3)−0.0024 (4)
Co1—O1W2.0648 (8)N1—C11.3390 (11)
Co1—O1Wi2.0648 (8)N2—C21.3230 (14)
Co1—O512.0979 (7)N2—C31.3515 (13)
Co1—O51i2.0979 (7)C1—C21.3834 (13)
Co1—N1i2.1303 (7)C1—H10.93
Co1—N12.1303 (7)N3—C31.3329 (13)
O1W—H1W0.760 (18)N3—H3A0.86
O1W—H2W0.763 (18)N3—H3B0.86
O51—C51.2568 (12)C3—C41.4270 (12)
O52—C51.2460 (12)C5—C41.5078 (13)
N1—C41.3252 (11)C2—H20.93
O1W—Co1—O1Wi93.31 (5)C1—N1—Co1126.91 (6)
O1W—Co1—O51170.46 (3)C2—N2—C3117.88 (8)
O1Wi—Co1—O5190.57 (4)N1—C1—C2119.71 (9)
O1W—Co1—O51i90.57 (4)N1—C1—H1120.1
O1Wi—Co1—O51i170.46 (3)C2—C1—H1120.1
O51—Co1—O51i86.97 (5)C3—N3—H3A120
O1W—Co1—N1i89.31 (3)C3—N3—H3B120
O1Wi—Co1—N1i93.89 (3)H3A—N3—H3B120
O51—Co1—N1i99.13 (3)N3—C3—N2117.61 (8)
O51i—Co1—N1i77.43 (3)N3—C3—C4122.66 (9)
O1W—Co1—N193.89 (3)N2—C3—C4119.73 (8)
O1Wi—Co1—N189.31 (3)O52—C5—O51125.65 (9)
O51—Co1—N177.43 (3)O52—C5—C4117.72 (8)
O51i—Co1—N199.13 (3)O51—C5—C4116.63 (8)
N1i—Co1—N1175.34 (4)N1—C4—C3120.19 (8)
Co1—O1W—H1W124.2 (12)N1—C4—C5115.59 (7)
Co1—O1W—H2W121.7 (11)C3—C4—C5124.20 (8)
H1W—O1W—H2W104.7 (15)N2—C2—C1122.81 (9)
C5—O51—Co1116.60 (6)N2—C2—H2118.6
C4—N1—C1119.58 (7)C1—C2—H2118.6
C4—N1—Co1113.50 (6)
O1Wi—Co1—O51—C5−93.84 (8)Co1—O51—C5—O52−175.74 (10)
O51i—Co1—O51—C595.39 (8)Co1—O51—C5—C44.97 (12)
N1i—Co1—O51—C5172.13 (8)C1—N1—C4—C3−1.05 (13)
N1—Co1—O51—C5−4.67 (7)Co1—N1—C4—C3179.46 (6)
O1W—Co1—N1—C4−172.54 (6)C1—N1—C4—C5177.36 (8)
O1Wi—Co1—N1—C494.19 (6)Co1—N1—C4—C5−2.13 (10)
O51—Co1—N1—C43.45 (6)N3—C3—C4—N1−176.88 (9)
O51i—Co1—N1—C4−81.34 (6)N2—C3—C4—N13.34 (13)
O1W—Co1—N1—C18.01 (8)N3—C3—C4—C54.85 (15)
O1Wi—Co1—N1—C1−85.25 (8)N2—C3—C4—C5−174.93 (9)
O51—Co1—N1—C1−175.99 (8)O52—C5—C4—N1178.82 (10)
O51i—Co1—N1—C199.22 (8)O51—C5—C4—N1−1.84 (13)
C4—N1—C1—C2−1.63 (14)O52—C5—C4—C3−2.84 (15)
Co1—N1—C1—C2177.78 (7)O51—C5—C4—C3176.50 (9)
C2—N2—C3—N3177.46 (9)C3—N2—C2—C10.07 (16)
C2—N2—C3—C4−2.76 (14)N1—C1—C2—N22.23 (16)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···N2ii0.761 (18)2.070 (18)2.8254 (12)172.2 (17)
O1W—H2W···O52iii0.762 (18)1.898 (17)2.6470 (12)167.1 (16)
N3—H3A···O51iv0.862.333.0525 (12)141
N3—H3B···O520.862.072.7036 (13)130
C1—H1···O52iii0.932.553.4010 (13)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1W⋯N2i 0.761 (18)2.070 (18)2.8254 (12)172.2 (17)
O1W—H2W⋯O52ii 0.762 (18)1.898 (17)2.6470 (12)167.1 (16)
N3—H3A⋯O51iii 0.862.333.0525 (12)141
N3—H3B⋯O520.862.072.7036 (13)130

Symmetry codes: (i) ; (ii) ; (iii) .

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