Literature DB >> 22058711

Diaqua-bis-(5-methyl-pyrazine-2-carboxyl-ato-κN,O)cobalt(II) dihydrate.

Qi-Ying Shi, Guo-Chun Zhang, Chun-Sheng Zhou, Qi Yang.   

Abstract

In the title complex, [Co(C(6)H(5)N(2)O(2))(2)(H(2)O)(2)]·2H(2)O, the coordination geometry of the Co(2+) cation is distorted octa-hedral, with two N atoms and two O atoms from two 5-methyl-pyrazine-2-carboxyl-ate ligands in the equatorial plane. The two remaining coordination sites are occupied by two water mol-ecules. In addition, there are two uncoordinated water mol-ecules in the asymmetric unit. The crystal structure is stabilized by a network of O-H⋯O and O-H⋯N hydrogen-bonding inter-actions, forming a three-dimensional structure.

Entities:  

Year:  2011        PMID: 22058711      PMCID: PMC3201376          DOI: 10.1107/S1600536811038591

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chapman et al. (2002 ▶); Fan et al. (2007 ▶); Liu et al. (2007 ▶); Wang et al. (2008 ▶). For their applications, see: Tanase et al. (2006 ▶); Ptasiewicz-Bak & Leciejewicz (2000 ▶).

Experimental

Crystal data

[Co(C6H5N2O2)2(H2O)2]·2H2O M = 405.23 Monoclinic, a = 10.092 (3) Å b = 13.588 (4) Å c = 12.287 (4) Å β = 102.961 (6)° V = 1642.1 (9) Å3 Z = 4 Mo Kα radiation μ = 1.10 mm−1 T = 298 K 0.27 × 0.19 × 0.12 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.797, T max = 0.902 8089 measured reflections 2914 independent reflections 2150 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.075 S = 1.02 2914 reflections 298 parameters All H-atom parameters refined Δρmax = 0.29 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536811038591/ru2012sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038591/ru2012Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H5N2O2)2(H2O)2]·2H2OF(000) = 836
Mr = 405.23Dx = 1.639 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3524 reflections
a = 10.092 (3) Åθ = 2.0–25.1°
b = 13.588 (4) ŵ = 1.10 mm1
c = 12.287 (4) ÅT = 298 K
β = 102.961 (6)°Block, red
V = 1642.1 (9) Å30.27 × 0.19 × 0.12 mm
Z = 4
Bruker SMART APEX diffractometer2914 independent reflections
Radiation source: fine-focus sealed tube2150 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scansθmax = 25.1°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −10→12
Tmin = 0.797, Tmax = 0.902k = −15→16
8089 measured reflectionsl = −10→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075All H-atom parameters refined
S = 1.02w = 1/[σ2(Fo2) + (0.035P)2 + 0.2465P] where P = (Fo2 + 2Fc2)/3
2914 reflections(Δ/σ)max = 0.001
298 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.24651 (3)0.38090 (2)0.97992 (3)0.03100 (12)
O10.44853 (15)0.40135 (12)1.05505 (13)0.0362 (4)
O30.04518 (15)0.35626 (13)0.90725 (13)0.0366 (4)
O50.2709 (2)0.23572 (17)1.0370 (2)0.0473 (6)
O20.59099 (16)0.44209 (14)1.21396 (14)0.0444 (5)
N10.25942 (18)0.33775 (14)0.81864 (16)0.0300 (5)
O60.23198 (19)0.52962 (15)0.92703 (19)0.0396 (5)
N30.23215 (19)0.42234 (14)1.14178 (16)0.0317 (5)
C10.4749 (2)0.42518 (18)1.1563 (2)0.0341 (6)
N20.2339 (2)0.29075 (15)0.59604 (17)0.0387 (5)
O4−0.09886 (16)0.30920 (13)0.75154 (14)0.0444 (5)
C80.1372 (2)0.31958 (16)0.75246 (19)0.0295 (5)
C70.0172 (2)0.32855 (17)0.8068 (2)0.0313 (6)
C100.3561 (2)0.30930 (17)0.6620 (2)0.0350 (6)
C20.3548 (2)0.43145 (17)1.21038 (19)0.0318 (6)
C50.1238 (3)0.42804 (19)1.1858 (2)0.0368 (6)
C90.1266 (3)0.2951 (2)0.6420 (2)0.0376 (6)
C120.3680 (3)0.33191 (18)0.7746 (2)0.0348 (6)
C40.1354 (3)0.43880 (19)1.2999 (2)0.0390 (6)
C110.4772 (4)0.3074 (3)0.6119 (3)0.0500 (8)
N40.2575 (2)0.44717 (16)1.36849 (17)0.0445 (6)
C30.3647 (3)0.4445 (2)1.3230 (2)0.0426 (7)
C60.0139 (4)0.4391 (3)1.3499 (3)0.0588 (9)
O70.2904 (2)0.66789 (18)0.10443 (19)0.0497 (5)
O80.2210 (3)0.06357 (19)0.9342 (2)0.0725 (8)
H70.048 (2)0.2800 (17)0.599 (2)0.038 (7)*
H20.042 (2)0.4240 (17)1.141 (2)0.032 (7)*
H60.455 (2)0.3478 (16)0.8176 (19)0.032 (6)*
H10.445 (2)0.4485 (18)1.364 (2)0.040 (8)*
H100.491 (3)0.368 (2)0.576 (3)0.078 (11)*
H40.004 (4)0.374 (3)1.382 (4)0.133 (18)*
H7WA0.289 (3)0.711 (2)0.069 (3)0.066 (13)*
H80.556 (4)0.302 (2)0.662 (3)0.080 (12)*
H5−0.056 (3)0.441 (2)1.306 (3)0.071 (12)*
H90.475 (3)0.257 (3)0.567 (3)0.075 (11)*
H30.007 (4)0.494 (3)1.396 (3)0.100 (13)*
H7WB0.221 (4)0.673 (2)0.140 (3)0.092 (12)*
H6WA0.251 (3)0.561 (2)0.979 (3)0.050 (11)*
H6WB0.295 (3)0.540 (2)0.886 (3)0.064 (10)*
H8WA0.214 (4)0.021 (3)0.975 (3)0.082 (14)*
H8WB0.186 (3)0.052 (2)0.878 (3)0.065 (12)*
H5WB0.253 (3)0.190 (2)1.000 (3)0.058 (11)*
H5WA0.301 (3)0.224 (2)1.095 (3)0.057 (12)*
U11U22U33U12U13U23
Co10.02774 (19)0.0445 (2)0.02001 (18)−0.00081 (15)0.00368 (13)−0.00206 (15)
O10.0313 (9)0.0539 (11)0.0236 (9)−0.0024 (8)0.0064 (7)−0.0035 (8)
O30.0300 (9)0.0571 (12)0.0235 (10)−0.0041 (8)0.0075 (7)−0.0046 (8)
O50.0590 (14)0.0465 (14)0.0291 (13)−0.0018 (10)−0.0054 (11)0.0013 (11)
O20.0329 (10)0.0684 (13)0.0293 (10)−0.0099 (9)0.0012 (8)−0.0023 (9)
N10.0270 (11)0.0376 (11)0.0251 (11)0.0009 (9)0.0055 (9)0.0007 (9)
O60.0378 (11)0.0499 (12)0.0319 (11)−0.0019 (9)0.0094 (9)0.0004 (10)
N30.0328 (11)0.0384 (12)0.0243 (11)−0.0001 (9)0.0071 (9)−0.0015 (9)
C10.0329 (14)0.0412 (15)0.0266 (14)−0.0031 (11)0.0034 (11)0.0021 (12)
N20.0441 (13)0.0447 (13)0.0296 (12)−0.0051 (10)0.0134 (10)−0.0069 (10)
O40.0298 (10)0.0716 (13)0.0303 (10)−0.0090 (9)0.0034 (8)−0.0097 (9)
C80.0337 (14)0.0301 (13)0.0247 (13)−0.0022 (10)0.0064 (11)0.0014 (11)
C70.0307 (14)0.0359 (14)0.0267 (14)−0.0003 (11)0.0051 (11)0.0028 (11)
C100.0386 (15)0.0338 (14)0.0350 (15)0.0035 (11)0.0133 (12)0.0008 (11)
C20.0335 (14)0.0353 (14)0.0250 (13)−0.0048 (11)0.0034 (11)−0.0005 (11)
C50.0340 (15)0.0445 (16)0.0305 (15)0.0024 (12)0.0043 (12)−0.0008 (12)
C90.0365 (16)0.0483 (17)0.0280 (15)−0.0085 (12)0.0074 (12)−0.0077 (12)
C120.0310 (15)0.0411 (15)0.0324 (15)0.0020 (12)0.0071 (12)−0.0001 (12)
C40.0448 (16)0.0422 (16)0.0329 (15)0.0039 (12)0.0150 (13)−0.0007 (12)
C110.047 (2)0.062 (2)0.046 (2)0.0041 (16)0.0222 (16)−0.0038 (18)
N40.0486 (14)0.0618 (16)0.0248 (12)−0.0028 (11)0.0119 (11)−0.0055 (11)
C30.0395 (17)0.0593 (19)0.0270 (15)−0.0079 (14)0.0030 (13)−0.0077 (13)
C60.047 (2)0.088 (3)0.047 (2)0.0062 (19)0.0220 (17)−0.004 (2)
O70.0454 (13)0.0599 (15)0.0466 (13)0.0050 (10)0.0164 (10)0.0104 (12)
O80.114 (2)0.0578 (16)0.0327 (13)−0.0154 (14)−0.0111 (14)0.0038 (13)
Co1—O32.0551 (17)C8—C71.514 (3)
Co1—O12.0596 (17)C10—C121.396 (3)
Co1—O52.090 (2)C10—C111.487 (4)
Co1—N12.098 (2)C2—C31.377 (3)
Co1—N32.103 (2)C5—C41.388 (3)
Co1—O62.118 (2)C5—H20.88 (2)
O1—C11.255 (3)C9—H70.88 (2)
O3—C71.260 (3)C12—H60.95 (2)
O5—H5WB0.76 (3)C4—N41.333 (3)
O5—H5WA0.72 (3)C4—C61.490 (4)
O2—C11.247 (3)C11—H100.96 (3)
N1—C121.329 (3)C11—H80.89 (4)
N1—C81.339 (3)C11—H90.88 (3)
O6—H6WA0.76 (3)N4—C31.325 (3)
O6—H6WB0.90 (3)C3—H10.85 (2)
N3—C51.326 (3)C6—H40.98 (4)
N3—C21.337 (3)C6—H50.79 (3)
C1—C21.510 (3)C6—H30.95 (4)
N2—C91.330 (3)O7—H7WA0.73 (3)
N2—C101.339 (3)O7—H7WB0.91 (4)
O4—C71.244 (3)O8—H8WA0.78 (4)
C8—C91.378 (3)O8—H8WB0.72 (3)
O3—Co1—O1178.22 (7)O3—C7—C8115.5 (2)
O3—Co1—O591.29 (8)N2—C10—C12120.3 (2)
O1—Co1—O586.95 (8)N2—C10—C11118.5 (2)
O3—Co1—N178.99 (7)C12—C10—C11121.2 (3)
O1—Co1—N1101.31 (7)N3—C2—C3119.6 (2)
O5—Co1—N191.47 (9)N3—C2—C1116.0 (2)
O3—Co1—N3100.57 (7)C3—C2—C1124.4 (2)
O1—Co1—N379.12 (7)N3—C5—C4121.8 (2)
O5—Co1—N387.90 (9)N3—C5—H2119.1 (15)
N1—Co1—N3179.22 (7)C4—C5—H2119.1 (15)
O3—Co1—O691.63 (7)N2—C9—C8122.6 (2)
O1—Co1—O690.12 (7)N2—C9—H7116.4 (16)
O5—Co1—O6177.05 (9)C8—C9—H7121.0 (16)
N1—Co1—O689.52 (8)N1—C12—C10121.4 (2)
N3—Co1—O691.14 (9)N1—C12—H6120.7 (14)
C1—O1—Co1116.60 (15)C10—C12—H6117.8 (14)
C7—O3—Co1117.16 (14)N4—C4—C5120.3 (2)
Co1—O5—H5WB125 (2)N4—C4—C6117.9 (3)
Co1—O5—H5WA122 (3)C5—C4—C6121.8 (3)
H5WB—O5—H5WA113 (3)C10—C11—H10113.4 (19)
C12—N1—C8118.2 (2)C10—C11—H8114 (2)
C12—N1—Co1129.26 (16)H10—C11—H8101 (3)
C8—N1—Co1112.41 (14)C10—C11—H9111 (2)
Co1—O6—H6WA107 (2)H10—C11—H9111 (3)
Co1—O6—H6WB108.3 (18)H8—C11—H9106 (3)
H6WA—O6—H6WB108 (3)C3—N4—C4117.2 (2)
C5—N3—C2117.9 (2)N4—C3—C2123.0 (2)
C5—N3—Co1129.72 (17)N4—C3—H1120.2 (17)
C2—N3—Co1111.75 (14)C2—C3—H1116.7 (17)
O2—C1—O1125.0 (2)C4—C6—H4109 (3)
O2—C1—C2119.0 (2)C4—C6—H5114 (2)
O1—C1—C2116.0 (2)H4—C6—H599 (3)
C9—N2—C10117.5 (2)C4—C6—H3115 (2)
N1—C8—C9120.0 (2)H4—C6—H3117 (3)
N1—C8—C7115.9 (2)H5—C6—H3102 (3)
C9—C8—C7124.1 (2)H7WA—O7—H7WB108 (3)
O4—C7—O3125.1 (2)H8WA—O8—H8WB111 (4)
O4—C7—C8119.4 (2)
O3—Co1—O1—C1−78 (2)C12—N1—C8—C7−179.3 (2)
O5—Co1—O1—C1−86.91 (18)Co1—N1—C8—C7−2.8 (2)
N1—Co1—O1—C1−177.79 (17)Co1—O3—C7—O4178.88 (19)
N3—Co1—O1—C11.54 (17)Co1—O3—C7—C8−1.4 (3)
O6—Co1—O1—C192.68 (18)N1—C8—C7—O4−177.4 (2)
O1—Co1—O3—C7−100 (2)C9—C8—C7—O43.0 (4)
O5—Co1—O3—C7−91.29 (18)N1—C8—C7—O32.9 (3)
N1—Co1—O3—C7−0.04 (17)C9—C8—C7—O3−176.7 (2)
N3—Co1—O3—C7−179.39 (17)C9—N2—C10—C120.2 (4)
O6—Co1—O3—C789.15 (18)C9—N2—C10—C11−178.5 (3)
O3—Co1—N1—C12177.6 (2)C5—N3—C2—C31.1 (4)
O1—Co1—N1—C12−4.2 (2)Co1—N3—C2—C3−170.9 (2)
O5—Co1—N1—C12−91.4 (2)C5—N3—C2—C1−179.6 (2)
N3—Co1—N1—C12−127 (5)Co1—N3—C2—C18.4 (3)
O6—Co1—N1—C1285.8 (2)O2—C1—C2—N3173.5 (2)
O3—Co1—N1—C81.64 (15)O1—C1—C2—N3−7.6 (3)
O1—Co1—N1—C8179.85 (15)O2—C1—C2—C3−7.3 (4)
O5—Co1—N1—C892.67 (16)O1—C1—C2—C3171.7 (2)
N3—Co1—N1—C857 (6)C2—N3—C5—C4−2.8 (4)
O6—Co1—N1—C8−90.12 (16)Co1—N3—C5—C4167.58 (18)
O3—Co1—N3—C51.9 (2)C10—N2—C9—C81.4 (4)
O1—Co1—N3—C5−176.4 (2)N1—C8—C9—N2−1.7 (4)
O5—Co1—N3—C5−89.1 (2)C7—C8—C9—N2177.9 (2)
N1—Co1—N3—C5−53 (6)C8—N1—C12—C101.2 (4)
O6—Co1—N3—C593.7 (2)Co1—N1—C12—C10−174.60 (17)
O3—Co1—N3—C2172.67 (16)N2—C10—C12—N1−1.5 (4)
O1—Co1—N3—C2−5.55 (16)C11—C10—C12—N1177.1 (3)
O5—Co1—N3—C281.75 (17)N3—C5—C4—N42.3 (4)
N1—Co1—N3—C2117 (5)N3—C5—C4—C6−176.2 (3)
O6—Co1—N3—C2−95.46 (17)C5—C4—N4—C3−0.1 (4)
Co1—O1—C1—O2−178.67 (19)C6—C4—N4—C3178.5 (3)
Co1—O1—C1—C22.4 (3)C4—N4—C3—C2−1.5 (4)
C12—N1—C8—C90.3 (3)N3—C2—C3—N41.0 (4)
Co1—N1—C8—C9176.80 (19)C1—C2—C3—N4−178.2 (2)
D—H···AD—HH···AD···AD—H···A
O7—H7WA···N2i0.73 (3)2.27 (3)2.940 (3)154 (4)
O7—H7WB···O4ii0.91 (4)2.02 (4)2.915 (3)168 (3)
O7—H7WB···O3ii0.91 (4)2.65 (4)3.373 (3)137 (3)
O6—H6WA···O7iii0.76 (3)2.09 (3)2.838 (3)170 (3)
O6—H6WB···O2iv0.90 (3)1.88 (3)2.780 (3)173 (3)
O6—H6WB···O1iv0.90 (3)2.65 (3)3.318 (3)131 (2)
O8—H8WA···N4v0.78 (4)2.13 (4)2.861 (4)156 (4)
O8—H8WB···O2vi0.72 (3)2.03 (4)2.731 (3)165 (4)
O5—H5WB···O80.76 (3)1.90 (3)2.652 (4)170 (3)
O5—H5WA···O4vii0.72 (3)2.02 (3)2.738 (3)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O7—H7WA⋯N2i0.73 (3)2.27 (3)2.940 (3)154 (4)
O7—H7WB⋯O4ii0.91 (4)2.02 (4)2.915 (3)168 (3)
O6—H6WA⋯O7iii0.76 (3)2.09 (3)2.838 (3)170 (3)
O6—H6WB⋯O2iv0.90 (3)1.88 (3)2.780 (3)173 (3)
O8—H8WA⋯N4v0.78 (4)2.13 (4)2.861 (4)156 (4)
O8—H8WB⋯O2vi0.72 (3)2.03 (4)2.731 (3)165 (4)
O5—H5WB⋯O80.76 (3)1.90 (3)2.652 (4)170 (3)
O5—H5WA⋯O4vii0.72 (3)2.02 (3)2.738 (3)174 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hydrothermal reaction of Cu(II)/pyrazine-2,3,5-tricarboxylic acid and characterization of the copper(II) complexes.

Authors:  Feng-Qin Wang; Wei-Hua Mu; Xiang-Jun Zheng; Li-Cun Li; De-Cai Fang; Lin-Pei Jin
Journal:  Inorg Chem       Date:  2008-05-20       Impact factor: 5.165

  2 in total
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1.  Bis(3-amino-pyrazine-2-carboxyl-ato-κ(2)N(1),O)diaqua-cobalt(II).

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