| Literature DB >> 22058711 |
Qi-Ying Shi, Guo-Chun Zhang, Chun-Sheng Zhou, Qi Yang.
Abstract
In the title complex, [Co(C(6)H(5)N(2)O(2))(2)(H(2)O)(2)]·2H(2)O, the coordination geometry of the Co(2+) cation is distorted octa-hedral, with two N atoms and two O atoms from two 5-methyl-pyrazine-2-carboxyl-ate ligands in the equatorial plane. The two remaining coordination sites are occupied by two water mol-ecules. In addition, there are two uncoordinated water mol-ecules in the asymmetric unit. The crystal structure is stabilized by a network of O-H⋯O and O-H⋯N hydrogen-bonding inter-actions, forming a three-dimensional structure.Entities:
Year: 2011 PMID: 22058711 PMCID: PMC3201376 DOI: 10.1107/S1600536811038591
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C6H5N2O2)2(H2O)2]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3524 reflections |
| θ = 2.0–25.1° | |
| µ = 1.10 mm−1 | |
| β = 102.961 (6)° | Block, red |
| 0.27 × 0.19 × 0.12 mm | |
| Bruker SMART APEX diffractometer | 2914 independent reflections |
| Radiation source: fine-focus sealed tube | 2150 reflections with |
| graphite | |
| ω scans | θmax = 25.1°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 8089 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 2914 reflections | (Δ/σ)max = 0.001 |
| 298 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 0.24651 (3) | 0.38090 (2) | 0.97992 (3) | 0.03100 (12) | |
| O1 | 0.44853 (15) | 0.40135 (12) | 1.05505 (13) | 0.0362 (4) | |
| O3 | 0.04518 (15) | 0.35626 (13) | 0.90725 (13) | 0.0366 (4) | |
| O5 | 0.2709 (2) | 0.23572 (17) | 1.0370 (2) | 0.0473 (6) | |
| O2 | 0.59099 (16) | 0.44209 (14) | 1.21396 (14) | 0.0444 (5) | |
| N1 | 0.25942 (18) | 0.33775 (14) | 0.81864 (16) | 0.0300 (5) | |
| O6 | 0.23198 (19) | 0.52962 (15) | 0.92703 (19) | 0.0396 (5) | |
| N3 | 0.23215 (19) | 0.42234 (14) | 1.14178 (16) | 0.0317 (5) | |
| C1 | 0.4749 (2) | 0.42518 (18) | 1.1563 (2) | 0.0341 (6) | |
| N2 | 0.2339 (2) | 0.29075 (15) | 0.59604 (17) | 0.0387 (5) | |
| O4 | −0.09886 (16) | 0.30920 (13) | 0.75154 (14) | 0.0444 (5) | |
| C8 | 0.1372 (2) | 0.31958 (16) | 0.75246 (19) | 0.0295 (5) | |
| C7 | 0.0172 (2) | 0.32855 (17) | 0.8068 (2) | 0.0313 (6) | |
| C10 | 0.3561 (2) | 0.30930 (17) | 0.6620 (2) | 0.0350 (6) | |
| C2 | 0.3548 (2) | 0.43145 (17) | 1.21038 (19) | 0.0318 (6) | |
| C5 | 0.1238 (3) | 0.42804 (19) | 1.1858 (2) | 0.0368 (6) | |
| C9 | 0.1266 (3) | 0.2951 (2) | 0.6420 (2) | 0.0376 (6) | |
| C12 | 0.3680 (3) | 0.33191 (18) | 0.7746 (2) | 0.0348 (6) | |
| C4 | 0.1354 (3) | 0.43880 (19) | 1.2999 (2) | 0.0390 (6) | |
| C11 | 0.4772 (4) | 0.3074 (3) | 0.6119 (3) | 0.0500 (8) | |
| N4 | 0.2575 (2) | 0.44717 (16) | 1.36849 (17) | 0.0445 (6) | |
| C3 | 0.3647 (3) | 0.4445 (2) | 1.3230 (2) | 0.0426 (7) | |
| C6 | 0.0139 (4) | 0.4391 (3) | 1.3499 (3) | 0.0588 (9) | |
| O7 | 0.2904 (2) | 0.66789 (18) | 0.10443 (19) | 0.0497 (5) | |
| O8 | 0.2210 (3) | 0.06357 (19) | 0.9342 (2) | 0.0725 (8) | |
| H7 | 0.048 (2) | 0.2800 (17) | 0.599 (2) | 0.038 (7)* | |
| H2 | 0.042 (2) | 0.4240 (17) | 1.141 (2) | 0.032 (7)* | |
| H6 | 0.455 (2) | 0.3478 (16) | 0.8176 (19) | 0.032 (6)* | |
| H1 | 0.445 (2) | 0.4485 (18) | 1.364 (2) | 0.040 (8)* | |
| H10 | 0.491 (3) | 0.368 (2) | 0.576 (3) | 0.078 (11)* | |
| H4 | 0.004 (4) | 0.374 (3) | 1.382 (4) | 0.133 (18)* | |
| H7WA | 0.289 (3) | 0.711 (2) | 0.069 (3) | 0.066 (13)* | |
| H8 | 0.556 (4) | 0.302 (2) | 0.662 (3) | 0.080 (12)* | |
| H5 | −0.056 (3) | 0.441 (2) | 1.306 (3) | 0.071 (12)* | |
| H9 | 0.475 (3) | 0.257 (3) | 0.567 (3) | 0.075 (11)* | |
| H3 | 0.007 (4) | 0.494 (3) | 1.396 (3) | 0.100 (13)* | |
| H7WB | 0.221 (4) | 0.673 (2) | 0.140 (3) | 0.092 (12)* | |
| H6WA | 0.251 (3) | 0.561 (2) | 0.979 (3) | 0.050 (11)* | |
| H6WB | 0.295 (3) | 0.540 (2) | 0.886 (3) | 0.064 (10)* | |
| H8WA | 0.214 (4) | 0.021 (3) | 0.975 (3) | 0.082 (14)* | |
| H8WB | 0.186 (3) | 0.052 (2) | 0.878 (3) | 0.065 (12)* | |
| H5WB | 0.253 (3) | 0.190 (2) | 1.000 (3) | 0.058 (11)* | |
| H5WA | 0.301 (3) | 0.224 (2) | 1.095 (3) | 0.057 (12)* |
| Co1 | 0.02774 (19) | 0.0445 (2) | 0.02001 (18) | −0.00081 (15) | 0.00368 (13) | −0.00206 (15) |
| O1 | 0.0313 (9) | 0.0539 (11) | 0.0236 (9) | −0.0024 (8) | 0.0064 (7) | −0.0035 (8) |
| O3 | 0.0300 (9) | 0.0571 (12) | 0.0235 (10) | −0.0041 (8) | 0.0075 (7) | −0.0046 (8) |
| O5 | 0.0590 (14) | 0.0465 (14) | 0.0291 (13) | −0.0018 (10) | −0.0054 (11) | 0.0013 (11) |
| O2 | 0.0329 (10) | 0.0684 (13) | 0.0293 (10) | −0.0099 (9) | 0.0012 (8) | −0.0023 (9) |
| N1 | 0.0270 (11) | 0.0376 (11) | 0.0251 (11) | 0.0009 (9) | 0.0055 (9) | 0.0007 (9) |
| O6 | 0.0378 (11) | 0.0499 (12) | 0.0319 (11) | −0.0019 (9) | 0.0094 (9) | 0.0004 (10) |
| N3 | 0.0328 (11) | 0.0384 (12) | 0.0243 (11) | −0.0001 (9) | 0.0071 (9) | −0.0015 (9) |
| C1 | 0.0329 (14) | 0.0412 (15) | 0.0266 (14) | −0.0031 (11) | 0.0034 (11) | 0.0021 (12) |
| N2 | 0.0441 (13) | 0.0447 (13) | 0.0296 (12) | −0.0051 (10) | 0.0134 (10) | −0.0069 (10) |
| O4 | 0.0298 (10) | 0.0716 (13) | 0.0303 (10) | −0.0090 (9) | 0.0034 (8) | −0.0097 (9) |
| C8 | 0.0337 (14) | 0.0301 (13) | 0.0247 (13) | −0.0022 (10) | 0.0064 (11) | 0.0014 (11) |
| C7 | 0.0307 (14) | 0.0359 (14) | 0.0267 (14) | −0.0003 (11) | 0.0051 (11) | 0.0028 (11) |
| C10 | 0.0386 (15) | 0.0338 (14) | 0.0350 (15) | 0.0035 (11) | 0.0133 (12) | 0.0008 (11) |
| C2 | 0.0335 (14) | 0.0353 (14) | 0.0250 (13) | −0.0048 (11) | 0.0034 (11) | −0.0005 (11) |
| C5 | 0.0340 (15) | 0.0445 (16) | 0.0305 (15) | 0.0024 (12) | 0.0043 (12) | −0.0008 (12) |
| C9 | 0.0365 (16) | 0.0483 (17) | 0.0280 (15) | −0.0085 (12) | 0.0074 (12) | −0.0077 (12) |
| C12 | 0.0310 (15) | 0.0411 (15) | 0.0324 (15) | 0.0020 (12) | 0.0071 (12) | −0.0001 (12) |
| C4 | 0.0448 (16) | 0.0422 (16) | 0.0329 (15) | 0.0039 (12) | 0.0150 (13) | −0.0007 (12) |
| C11 | 0.047 (2) | 0.062 (2) | 0.046 (2) | 0.0041 (16) | 0.0222 (16) | −0.0038 (18) |
| N4 | 0.0486 (14) | 0.0618 (16) | 0.0248 (12) | −0.0028 (11) | 0.0119 (11) | −0.0055 (11) |
| C3 | 0.0395 (17) | 0.0593 (19) | 0.0270 (15) | −0.0079 (14) | 0.0030 (13) | −0.0077 (13) |
| C6 | 0.047 (2) | 0.088 (3) | 0.047 (2) | 0.0062 (19) | 0.0220 (17) | −0.004 (2) |
| O7 | 0.0454 (13) | 0.0599 (15) | 0.0466 (13) | 0.0050 (10) | 0.0164 (10) | 0.0104 (12) |
| O8 | 0.114 (2) | 0.0578 (16) | 0.0327 (13) | −0.0154 (14) | −0.0111 (14) | 0.0038 (13) |
| Co1—O3 | 2.0551 (17) | C8—C7 | 1.514 (3) |
| Co1—O1 | 2.0596 (17) | C10—C12 | 1.396 (3) |
| Co1—O5 | 2.090 (2) | C10—C11 | 1.487 (4) |
| Co1—N1 | 2.098 (2) | C2—C3 | 1.377 (3) |
| Co1—N3 | 2.103 (2) | C5—C4 | 1.388 (3) |
| Co1—O6 | 2.118 (2) | C5—H2 | 0.88 (2) |
| O1—C1 | 1.255 (3) | C9—H7 | 0.88 (2) |
| O3—C7 | 1.260 (3) | C12—H6 | 0.95 (2) |
| O5—H5WB | 0.76 (3) | C4—N4 | 1.333 (3) |
| O5—H5WA | 0.72 (3) | C4—C6 | 1.490 (4) |
| O2—C1 | 1.247 (3) | C11—H10 | 0.96 (3) |
| N1—C12 | 1.329 (3) | C11—H8 | 0.89 (4) |
| N1—C8 | 1.339 (3) | C11—H9 | 0.88 (3) |
| O6—H6WA | 0.76 (3) | N4—C3 | 1.325 (3) |
| O6—H6WB | 0.90 (3) | C3—H1 | 0.85 (2) |
| N3—C5 | 1.326 (3) | C6—H4 | 0.98 (4) |
| N3—C2 | 1.337 (3) | C6—H5 | 0.79 (3) |
| C1—C2 | 1.510 (3) | C6—H3 | 0.95 (4) |
| N2—C9 | 1.330 (3) | O7—H7WA | 0.73 (3) |
| N2—C10 | 1.339 (3) | O7—H7WB | 0.91 (4) |
| O4—C7 | 1.244 (3) | O8—H8WA | 0.78 (4) |
| C8—C9 | 1.378 (3) | O8—H8WB | 0.72 (3) |
| O3—Co1—O1 | 178.22 (7) | O3—C7—C8 | 115.5 (2) |
| O3—Co1—O5 | 91.29 (8) | N2—C10—C12 | 120.3 (2) |
| O1—Co1—O5 | 86.95 (8) | N2—C10—C11 | 118.5 (2) |
| O3—Co1—N1 | 78.99 (7) | C12—C10—C11 | 121.2 (3) |
| O1—Co1—N1 | 101.31 (7) | N3—C2—C3 | 119.6 (2) |
| O5—Co1—N1 | 91.47 (9) | N3—C2—C1 | 116.0 (2) |
| O3—Co1—N3 | 100.57 (7) | C3—C2—C1 | 124.4 (2) |
| O1—Co1—N3 | 79.12 (7) | N3—C5—C4 | 121.8 (2) |
| O5—Co1—N3 | 87.90 (9) | N3—C5—H2 | 119.1 (15) |
| N1—Co1—N3 | 179.22 (7) | C4—C5—H2 | 119.1 (15) |
| O3—Co1—O6 | 91.63 (7) | N2—C9—C8 | 122.6 (2) |
| O1—Co1—O6 | 90.12 (7) | N2—C9—H7 | 116.4 (16) |
| O5—Co1—O6 | 177.05 (9) | C8—C9—H7 | 121.0 (16) |
| N1—Co1—O6 | 89.52 (8) | N1—C12—C10 | 121.4 (2) |
| N3—Co1—O6 | 91.14 (9) | N1—C12—H6 | 120.7 (14) |
| C1—O1—Co1 | 116.60 (15) | C10—C12—H6 | 117.8 (14) |
| C7—O3—Co1 | 117.16 (14) | N4—C4—C5 | 120.3 (2) |
| Co1—O5—H5WB | 125 (2) | N4—C4—C6 | 117.9 (3) |
| Co1—O5—H5WA | 122 (3) | C5—C4—C6 | 121.8 (3) |
| H5WB—O5—H5WA | 113 (3) | C10—C11—H10 | 113.4 (19) |
| C12—N1—C8 | 118.2 (2) | C10—C11—H8 | 114 (2) |
| C12—N1—Co1 | 129.26 (16) | H10—C11—H8 | 101 (3) |
| C8—N1—Co1 | 112.41 (14) | C10—C11—H9 | 111 (2) |
| Co1—O6—H6WA | 107 (2) | H10—C11—H9 | 111 (3) |
| Co1—O6—H6WB | 108.3 (18) | H8—C11—H9 | 106 (3) |
| H6WA—O6—H6WB | 108 (3) | C3—N4—C4 | 117.2 (2) |
| C5—N3—C2 | 117.9 (2) | N4—C3—C2 | 123.0 (2) |
| C5—N3—Co1 | 129.72 (17) | N4—C3—H1 | 120.2 (17) |
| C2—N3—Co1 | 111.75 (14) | C2—C3—H1 | 116.7 (17) |
| O2—C1—O1 | 125.0 (2) | C4—C6—H4 | 109 (3) |
| O2—C1—C2 | 119.0 (2) | C4—C6—H5 | 114 (2) |
| O1—C1—C2 | 116.0 (2) | H4—C6—H5 | 99 (3) |
| C9—N2—C10 | 117.5 (2) | C4—C6—H3 | 115 (2) |
| N1—C8—C9 | 120.0 (2) | H4—C6—H3 | 117 (3) |
| N1—C8—C7 | 115.9 (2) | H5—C6—H3 | 102 (3) |
| C9—C8—C7 | 124.1 (2) | H7WA—O7—H7WB | 108 (3) |
| O4—C7—O3 | 125.1 (2) | H8WA—O8—H8WB | 111 (4) |
| O4—C7—C8 | 119.4 (2) | ||
| O3—Co1—O1—C1 | −78 (2) | C12—N1—C8—C7 | −179.3 (2) |
| O5—Co1—O1—C1 | −86.91 (18) | Co1—N1—C8—C7 | −2.8 (2) |
| N1—Co1—O1—C1 | −177.79 (17) | Co1—O3—C7—O4 | 178.88 (19) |
| N3—Co1—O1—C1 | 1.54 (17) | Co1—O3—C7—C8 | −1.4 (3) |
| O6—Co1—O1—C1 | 92.68 (18) | N1—C8—C7—O4 | −177.4 (2) |
| O1—Co1—O3—C7 | −100 (2) | C9—C8—C7—O4 | 3.0 (4) |
| O5—Co1—O3—C7 | −91.29 (18) | N1—C8—C7—O3 | 2.9 (3) |
| N1—Co1—O3—C7 | −0.04 (17) | C9—C8—C7—O3 | −176.7 (2) |
| N3—Co1—O3—C7 | −179.39 (17) | C9—N2—C10—C12 | 0.2 (4) |
| O6—Co1—O3—C7 | 89.15 (18) | C9—N2—C10—C11 | −178.5 (3) |
| O3—Co1—N1—C12 | 177.6 (2) | C5—N3—C2—C3 | 1.1 (4) |
| O1—Co1—N1—C12 | −4.2 (2) | Co1—N3—C2—C3 | −170.9 (2) |
| O5—Co1—N1—C12 | −91.4 (2) | C5—N3—C2—C1 | −179.6 (2) |
| N3—Co1—N1—C12 | −127 (5) | Co1—N3—C2—C1 | 8.4 (3) |
| O6—Co1—N1—C12 | 85.8 (2) | O2—C1—C2—N3 | 173.5 (2) |
| O3—Co1—N1—C8 | 1.64 (15) | O1—C1—C2—N3 | −7.6 (3) |
| O1—Co1—N1—C8 | 179.85 (15) | O2—C1—C2—C3 | −7.3 (4) |
| O5—Co1—N1—C8 | 92.67 (16) | O1—C1—C2—C3 | 171.7 (2) |
| N3—Co1—N1—C8 | 57 (6) | C2—N3—C5—C4 | −2.8 (4) |
| O6—Co1—N1—C8 | −90.12 (16) | Co1—N3—C5—C4 | 167.58 (18) |
| O3—Co1—N3—C5 | 1.9 (2) | C10—N2—C9—C8 | 1.4 (4) |
| O1—Co1—N3—C5 | −176.4 (2) | N1—C8—C9—N2 | −1.7 (4) |
| O5—Co1—N3—C5 | −89.1 (2) | C7—C8—C9—N2 | 177.9 (2) |
| N1—Co1—N3—C5 | −53 (6) | C8—N1—C12—C10 | 1.2 (4) |
| O6—Co1—N3—C5 | 93.7 (2) | Co1—N1—C12—C10 | −174.60 (17) |
| O3—Co1—N3—C2 | 172.67 (16) | N2—C10—C12—N1 | −1.5 (4) |
| O1—Co1—N3—C2 | −5.55 (16) | C11—C10—C12—N1 | 177.1 (3) |
| O5—Co1—N3—C2 | 81.75 (17) | N3—C5—C4—N4 | 2.3 (4) |
| N1—Co1—N3—C2 | 117 (5) | N3—C5—C4—C6 | −176.2 (3) |
| O6—Co1—N3—C2 | −95.46 (17) | C5—C4—N4—C3 | −0.1 (4) |
| Co1—O1—C1—O2 | −178.67 (19) | C6—C4—N4—C3 | 178.5 (3) |
| Co1—O1—C1—C2 | 2.4 (3) | C4—N4—C3—C2 | −1.5 (4) |
| C12—N1—C8—C9 | 0.3 (3) | N3—C2—C3—N4 | 1.0 (4) |
| Co1—N1—C8—C9 | 176.80 (19) | C1—C2—C3—N4 | −178.2 (2) |
| H··· | ||||
| O7—H7WA···N2i | 0.73 (3) | 2.27 (3) | 2.940 (3) | 154 (4) |
| O7—H7WB···O4ii | 0.91 (4) | 2.02 (4) | 2.915 (3) | 168 (3) |
| O7—H7WB···O3ii | 0.91 (4) | 2.65 (4) | 3.373 (3) | 137 (3) |
| O6—H6WA···O7iii | 0.76 (3) | 2.09 (3) | 2.838 (3) | 170 (3) |
| O6—H6WB···O2iv | 0.90 (3) | 1.88 (3) | 2.780 (3) | 173 (3) |
| O6—H6WB···O1iv | 0.90 (3) | 2.65 (3) | 3.318 (3) | 131 (2) |
| O8—H8WA···N4v | 0.78 (4) | 2.13 (4) | 2.861 (4) | 156 (4) |
| O8—H8WB···O2vi | 0.72 (3) | 2.03 (4) | 2.731 (3) | 165 (4) |
| O5—H5WB···O8 | 0.76 (3) | 1.90 (3) | 2.652 (4) | 170 (3) |
| O5—H5WA···O4vii | 0.72 (3) | 2.02 (3) | 2.738 (3) | 174 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O7—H7 | 0.73 (3) | 2.27 (3) | 2.940 (3) | 154 (4) |
| O7—H7 | 0.91 (4) | 2.02 (4) | 2.915 (3) | 168 (3) |
| O6—H6 | 0.76 (3) | 2.09 (3) | 2.838 (3) | 170 (3) |
| O6—H6 | 0.90 (3) | 1.88 (3) | 2.780 (3) | 173 (3) |
| O8—H8 | 0.78 (4) | 2.13 (4) | 2.861 (4) | 156 (4) |
| O8—H8 | 0.72 (3) | 2.03 (4) | 2.731 (3) | 165 (4) |
| O5—H5 | 0.76 (3) | 1.90 (3) | 2.652 (4) | 170 (3) |
| O5—H5 | 0.72 (3) | 2.02 (3) | 2.738 (3) | 174 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .