Literature DB >> 23424410

cis-Dichlorido(dimethyl sulfoxide-κS)(N,N,N',N'-tetra-methyl-guanidine-κN'')platinum(II).

Ivan I Eliseev1, Nadezhda A Bokach, Matti Haukka, Irina A Golenya.   

Abstract

In the title compound, cis-[PtCl(2)(C(5)H(13)N(3))(C(2)H(6)OS)], the four-coordinate Pt(II) atom is bonded to one N atom of the N,N,N',N'-tetra-methyl-guanidine ligand, one dimethyl sulfoxide S atom and two chloride ligands, forming a cis-square-planar geometry. The bond lengths and angles of the N-Pt-Cl functionality are typical for imine dichloridoplatinum(II) complexes. The H atom of the imino group is oriented towards the O atom of the sulfoxide group of a neighboring mol-ecule and forms an N-H⋯O hydrogen bond.

Entities:  

Year:  2013        PMID: 23424410      PMCID: PMC3569208          DOI: 10.1107/S160053681300130X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For guanidines serving as nucleophiles towards metal-activated nitriles at PtII and PtIV atoms, see: Gushchin et al. (2007 ▶, 2008 ▶); Tyan et al. (2008 ▶). For related structures, see: Bokach et al. (2003 ▶); Fairlie et al. (1997 ▶); Gonzalez et al. (2002 ▶); Makarycheva-Mikhailova et al. (2003 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[PtCl2(C5H13N3)(C2H6OS)] M = 459.30 Monoclinic, a = 10.1577 (5) Å b = 19.1711 (8) Å c = 8.6536 (3) Å β = 119.304 (2)° V = 1469.51 (11) Å3 Z = 4 Mo Kα radiation μ = 10.04 mm−1 T = 120 K 0.24 × 0.13 × 0.12 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.151, T max = 0.299 12560 measured reflections 3280 independent reflections 3044 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.045 S = 1.03 3280 reflections 142 parameters 2 restraints H-atom parameters constrained Δρmax = 1.49 e Å−3 Δρmin = −1.64 e Å−3 Absolute structure: Flack (1983 ▶), 1598 Friedel pairs Flack parameter: 0.008 (6) Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2007 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681300130X/hg5281sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300130X/hg5281Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PtCl2(C5H13N3)(C2H6OS)]F(000) = 872
Mr = 459.30Dx = 2.076 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 6239 reflections
a = 10.1577 (5) Åθ = 1.0–27.5°
b = 19.1711 (8) ŵ = 10.04 mm1
c = 8.6536 (3) ÅT = 120 K
β = 119.304 (2)°Block, pale yellow
V = 1469.51 (11) Å30.24 × 0.13 × 0.12 mm
Z = 4
Nonius KappaCCD diffractometer3280 independent reflections
Radiation source: fine-focus sealed tube3044 reflections with I > 2σ(I)
Horizontally mounted graphite crystal monochromatorRint = 0.041
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 3.4°
φ scans and ω scans with κ offseth = −13→13
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)k = −24→24
Tmin = 0.151, Tmax = 0.299l = −11→11
12560 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.023H-atom parameters constrained
wR(F2) = 0.045w = 1/[σ2(Fo2) + (0.P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.002
3280 reflectionsΔρmax = 1.49 e Å3
142 parametersΔρmin = −1.64 e Å3
2 restraintsAbsolute structure: Flack (1983), 1598 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.008 (6)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pt10.96648 (6)0.110788 (7)1.03671 (6)0.01299 (6)
Cl11.20421 (15)0.15985 (7)1.14273 (16)0.0221 (3)
Cl20.9945 (3)0.11372 (8)1.3201 (3)0.0229 (6)
S10.9352 (2)0.10943 (7)0.7678 (3)0.0133 (5)
O10.7956 (4)0.07948 (18)0.6268 (4)0.0197 (7)
N10.7691 (5)0.0608 (2)0.9550 (5)0.0172 (9)
H1N0.77660.01720.97920.026*
N20.5880 (5)0.1425 (2)0.7857 (6)0.0201 (9)
N30.5363 (5)0.0249 (2)0.7283 (5)0.0170 (9)
C10.6341 (6)0.0760 (3)0.8237 (6)0.0162 (10)
C20.6478 (7)0.1974 (3)0.9182 (7)0.0281 (12)
H2A0.68750.17691.03650.042*
H2B0.56710.23050.89720.042*
H2C0.72910.22180.91050.042*
C30.4915 (7)0.1652 (3)0.6032 (7)0.0329 (13)
H3A0.48580.12810.52200.049*
H3B0.53400.20740.58070.049*
H3C0.39010.17520.58430.049*
C40.5856 (6)−0.0446 (2)0.7127 (6)0.0201 (11)
H4A0.6924−0.04320.74460.030*
H4B0.5253−0.06100.59040.030*
H4C0.5723−0.07640.79260.030*
C50.3737 (6)0.0318 (3)0.6638 (8)0.0300 (13)
H5A0.35460.07490.71050.045*
H5B0.3384−0.00820.70390.045*
H5C0.31970.03340.53400.045*
C60.9526 (7)0.1948 (3)0.7012 (7)0.0250 (12)
H6A0.95260.19260.58800.038*
H6B1.04730.21570.79140.038*
H6C0.86740.22340.68720.038*
C71.0888 (6)0.0668 (3)0.7656 (6)0.0189 (11)
H7A1.08860.01740.79430.028*
H7B1.18360.08840.85370.028*
H7C1.07910.07110.64770.028*
U11U22U33U12U13U23
Pt10.01236 (9)0.01404 (8)0.01011 (8)−0.00112 (17)0.00359 (6)−0.00035 (14)
Cl10.0163 (6)0.0239 (6)0.0214 (6)−0.0052 (5)0.0056 (5)−0.0047 (5)
Cl20.0297 (13)0.0281 (12)0.0108 (10)−0.0039 (8)0.0099 (9)−0.0004 (6)
S10.0130 (10)0.0138 (10)0.0105 (9)0.0002 (6)0.0037 (8)0.0016 (6)
O10.018 (2)0.0257 (19)0.0129 (17)0.0000 (15)0.0058 (15)−0.0009 (14)
N10.021 (2)0.016 (2)0.013 (2)−0.0045 (17)0.0072 (18)0.0003 (16)
N20.016 (2)0.018 (2)0.022 (2)0.0048 (18)0.0057 (19)0.0029 (18)
N30.010 (2)0.019 (2)0.020 (2)−0.0008 (17)0.0053 (18)−0.0029 (17)
C10.013 (3)0.022 (3)0.016 (2)−0.001 (2)0.009 (2)0.002 (2)
C20.027 (3)0.021 (3)0.030 (3)0.005 (2)0.008 (3)−0.002 (2)
C30.026 (3)0.029 (3)0.026 (3)0.002 (3)−0.001 (3)0.006 (2)
C40.019 (3)0.019 (3)0.017 (2)0.000 (2)0.006 (2)−0.006 (2)
C50.014 (3)0.032 (3)0.044 (4)−0.003 (2)0.014 (3)−0.010 (3)
C60.029 (3)0.021 (3)0.021 (3)0.001 (2)0.009 (2)0.005 (2)
C70.016 (3)0.019 (3)0.017 (2)0.004 (2)0.004 (2)−0.002 (2)
Pt1—N12.013 (4)C2—H2C0.9800
Pt1—S12.189 (2)C3—H3A0.9800
Pt1—Cl12.3214 (13)C3—H3B0.9800
Pt1—Cl22.327 (2)C3—H3C0.9800
S1—O11.462 (4)C4—H4A0.9800
S1—C71.769 (5)C4—H4B0.9800
S1—C61.773 (5)C4—H4C0.9800
N1—C11.316 (6)C5—H5A0.9800
N1—H1N0.8556C5—H5B0.9800
N2—C11.342 (7)C5—H5C0.9800
N2—C21.452 (7)C6—H6A0.9800
N2—C31.459 (7)C6—H6B0.9800
N3—C11.352 (6)C6—H6C0.9800
N3—C41.451 (6)C7—H7A0.9800
N3—C51.467 (6)C7—H7B0.9800
C2—H2A0.9800C7—H7C0.9800
C2—H2B0.9800
N1—Pt1—S191.13 (12)N2—C3—H3A109.5
N1—Pt1—Cl1175.21 (12)N2—C3—H3B109.5
S1—Pt1—Cl190.38 (7)H3A—C3—H3B109.5
N1—Pt1—Cl288.20 (12)N2—C3—H3C109.5
S1—Pt1—Cl2178.66 (11)H3A—C3—H3C109.5
Cl1—Pt1—Cl290.38 (7)H3B—C3—H3C109.5
O1—S1—C7108.1 (2)N3—C4—H4A109.5
O1—S1—C6107.6 (3)N3—C4—H4B109.5
C7—S1—C6101.2 (3)H4A—C4—H4B109.5
O1—S1—Pt1117.94 (19)N3—C4—H4C109.5
C7—S1—Pt1110.29 (19)H4A—C4—H4C109.5
C6—S1—Pt1110.4 (2)H4B—C4—H4C109.5
C1—N1—Pt1129.5 (3)N3—C5—H5A109.5
C1—N1—H1N111.0N3—C5—H5B109.5
Pt1—N1—H1N115.1H5A—C5—H5B109.5
C1—N2—C2122.2 (4)N3—C5—H5C109.5
C1—N2—C3121.1 (4)H5A—C5—H5C109.5
C2—N2—C3116.1 (4)H5B—C5—H5C109.5
C1—N3—C4122.5 (4)S1—C6—H6A109.5
C1—N3—C5121.4 (4)S1—C6—H6B109.5
C4—N3—C5115.0 (4)H6A—C6—H6B109.5
N1—C1—N2120.9 (5)S1—C6—H6C109.5
N1—C1—N3120.7 (4)H6A—C6—H6C109.5
N2—C1—N3118.4 (4)H6B—C6—H6C109.5
N2—C2—H2A109.5S1—C7—H7A109.5
N2—C2—H2B109.5S1—C7—H7B109.5
H2A—C2—H2B109.5H7A—C7—H7B109.5
N2—C2—H2C109.5S1—C7—H7C109.5
H2A—C2—H2C109.5H7A—C7—H7C109.5
H2B—C2—H2C109.5H7B—C7—H7C109.5
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.862.213.021 (5)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O1i 0.862.213.021 (5)159

Symmetry code: (i) .

  9 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Models for Arginine-Metal Binding. Synthesis of Guanidine and Urea Ligands through Amination and Hydration of a Cyanamide Ligand Bound to Platinum(II), Osmium(III), and Cobalt(III).

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3.  A short history of SHELX.

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4.  Facile cyanamide-ammonia coupling mediated by cis- and trans-[PtIIL2] centers and giving metal-bound guanidines.

Authors:  Marina R Tyan; Nadezhda A Bokach; Meng-Jiy Wang; Matti Haukka; Maxim L Kuznetsov; Vadim Yu Kukushkin
Journal:  Dalton Trans       Date:  2008-08-11       Impact factor: 4.390

5.  X-ray structures of the first platinum complexes with Z configuration iminoether ligands: trans-dichlorobis(1-imino-1-methoxy-2,2'-dimethylpropane)platinum(II) and trans-tetrachlorobis(1-imino-1-methoxy-2,2'-dimethylpropane)platinum(IV).

Authors:  Ana M Gonzalez; Renzo Cini; Francesco P Intini; Concetta Pacifico; Giovanni Natile
Journal:  Inorg Chem       Date:  2002-02-11       Impact factor: 5.165

6.  Pt(II)-mediated nitrile-tetramethylguanidine coupling as a key step for a novel synthesis of 1,6-dihydro-1,3,5-dihydrotriazines.

Authors:  Pavel V Gushchin; Nadezhda A Bokach; Konstantin V Luzyanin; Alexey A Nazarov; Matti Haukka; Vadim Yu Kukushkin
Journal:  Inorg Chem       Date:  2007-02-01       Impact factor: 5.165

7.  Platinum(IV)-mediated nitrile-sulfimide coupling: a route to heterodiazadienes.

Authors:  Anastassiya V Makarycheva-Mikhailova; Nadezhda A Bokach; Vadim Yu Kukushkin; Paul F Kelly; Liam M Gilby; Maxim L Kuznetsov; Kathryn E Holmes; Matti Haukka; Jonathan Parr; Julia M Stonehouse; Mark R J Elsegood; Armando J L Pombeiro
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8.  Hydrolytic metal-mediated coupling of dialkylcyanamides at a Pt(IV) center giving a new family of diimino ligands.

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Journal:  Inorg Chem       Date:  2003-11-17       Impact factor: 5.165

9.  Novel tailoring reaction for two adjacent coordinated nitriles giving platinum 1,3,5-triazapentadiene complexes.

Authors:  Pavel V Gushchin; Marina R Tyan; Nadezhda A Bokach; Mikhail D Revenco; Matti Haukka; Meng-Jiy Wang; Cheng-Hsuan Lai; Pi-Tai Chou; Vadim Yu Kukushkin
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  9 in total

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