| Literature DB >> 23424410 |
Ivan I Eliseev1, Nadezhda A Bokach, Matti Haukka, Irina A Golenya.
Abstract
In the title compound, cis-[PtCl(2)(C(5)H(13)N(3))(C(2)H(6)OS)], the four-coordinate Pt(II) atom is bonded to one N atom of the N,N,N',N'-tetra-methyl-guanidine ligand, one dimethyl sulfoxide S atom and two chloride ligands, forming a cis-square-planar geometry. The bond lengths and angles of the N-Pt-Cl functionality are typical for imine dichloridoplatinum(II) complexes. The H atom of the imino group is oriented towards the O atom of the sulfoxide group of a neighboring mol-ecule and forms an N-H⋯O hydrogen bond.Entities:
Year: 2013 PMID: 23424410 PMCID: PMC3569208 DOI: 10.1107/S160053681300130X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PtCl2(C5H13N3)(C2H6OS)] | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 6239 reflections |
| θ = 1.0–27.5° | |
| µ = 10.04 mm−1 | |
| β = 119.304 (2)° | Block, pale yellow |
| 0.24 × 0.13 × 0.12 mm | |
| Nonius KappaCCD diffractometer | 3280 independent reflections |
| Radiation source: fine-focus sealed tube | 3044 reflections with |
| Horizontally mounted graphite crystal monochromator | |
| Detector resolution: 9 pixels mm-1 | θmax = 27.5°, θmin = 3.4° |
| φ scans and ω scans with κ offset | |
| Absorption correction: multi-scan ( | |
| 12560 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.002 | |
| 3280 reflections | Δρmax = 1.49 e Å−3 |
| 142 parameters | Δρmin = −1.64 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 1598 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.008 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Pt1 | 0.96648 (6) | 0.110788 (7) | 1.03671 (6) | 0.01299 (6) | |
| Cl1 | 1.20421 (15) | 0.15985 (7) | 1.14273 (16) | 0.0221 (3) | |
| Cl2 | 0.9945 (3) | 0.11372 (8) | 1.3201 (3) | 0.0229 (6) | |
| S1 | 0.9352 (2) | 0.10943 (7) | 0.7678 (3) | 0.0133 (5) | |
| O1 | 0.7956 (4) | 0.07948 (18) | 0.6268 (4) | 0.0197 (7) | |
| N1 | 0.7691 (5) | 0.0608 (2) | 0.9550 (5) | 0.0172 (9) | |
| H1N | 0.7766 | 0.0172 | 0.9792 | 0.026* | |
| N2 | 0.5880 (5) | 0.1425 (2) | 0.7857 (6) | 0.0201 (9) | |
| N3 | 0.5363 (5) | 0.0249 (2) | 0.7283 (5) | 0.0170 (9) | |
| C1 | 0.6341 (6) | 0.0760 (3) | 0.8237 (6) | 0.0162 (10) | |
| C2 | 0.6478 (7) | 0.1974 (3) | 0.9182 (7) | 0.0281 (12) | |
| H2A | 0.6875 | 0.1769 | 1.0365 | 0.042* | |
| H2B | 0.5671 | 0.2305 | 0.8972 | 0.042* | |
| H2C | 0.7291 | 0.2218 | 0.9105 | 0.042* | |
| C3 | 0.4915 (7) | 0.1652 (3) | 0.6032 (7) | 0.0329 (13) | |
| H3A | 0.4858 | 0.1281 | 0.5220 | 0.049* | |
| H3B | 0.5340 | 0.2074 | 0.5807 | 0.049* | |
| H3C | 0.3901 | 0.1752 | 0.5843 | 0.049* | |
| C4 | 0.5856 (6) | −0.0446 (2) | 0.7127 (6) | 0.0201 (11) | |
| H4A | 0.6924 | −0.0432 | 0.7446 | 0.030* | |
| H4B | 0.5253 | −0.0610 | 0.5904 | 0.030* | |
| H4C | 0.5723 | −0.0764 | 0.7926 | 0.030* | |
| C5 | 0.3737 (6) | 0.0318 (3) | 0.6638 (8) | 0.0300 (13) | |
| H5A | 0.3546 | 0.0749 | 0.7105 | 0.045* | |
| H5B | 0.3384 | −0.0082 | 0.7039 | 0.045* | |
| H5C | 0.3197 | 0.0334 | 0.5340 | 0.045* | |
| C6 | 0.9526 (7) | 0.1948 (3) | 0.7012 (7) | 0.0250 (12) | |
| H6A | 0.9526 | 0.1926 | 0.5880 | 0.038* | |
| H6B | 1.0473 | 0.2157 | 0.7914 | 0.038* | |
| H6C | 0.8674 | 0.2234 | 0.6872 | 0.038* | |
| C7 | 1.0888 (6) | 0.0668 (3) | 0.7656 (6) | 0.0189 (11) | |
| H7A | 1.0886 | 0.0174 | 0.7943 | 0.028* | |
| H7B | 1.1836 | 0.0884 | 0.8537 | 0.028* | |
| H7C | 1.0791 | 0.0711 | 0.6477 | 0.028* |
| Pt1 | 0.01236 (9) | 0.01404 (8) | 0.01011 (8) | −0.00112 (17) | 0.00359 (6) | −0.00035 (14) |
| Cl1 | 0.0163 (6) | 0.0239 (6) | 0.0214 (6) | −0.0052 (5) | 0.0056 (5) | −0.0047 (5) |
| Cl2 | 0.0297 (13) | 0.0281 (12) | 0.0108 (10) | −0.0039 (8) | 0.0099 (9) | −0.0004 (6) |
| S1 | 0.0130 (10) | 0.0138 (10) | 0.0105 (9) | 0.0002 (6) | 0.0037 (8) | 0.0016 (6) |
| O1 | 0.018 (2) | 0.0257 (19) | 0.0129 (17) | 0.0000 (15) | 0.0058 (15) | −0.0009 (14) |
| N1 | 0.021 (2) | 0.016 (2) | 0.013 (2) | −0.0045 (17) | 0.0072 (18) | 0.0003 (16) |
| N2 | 0.016 (2) | 0.018 (2) | 0.022 (2) | 0.0048 (18) | 0.0057 (19) | 0.0029 (18) |
| N3 | 0.010 (2) | 0.019 (2) | 0.020 (2) | −0.0008 (17) | 0.0053 (18) | −0.0029 (17) |
| C1 | 0.013 (3) | 0.022 (3) | 0.016 (2) | −0.001 (2) | 0.009 (2) | 0.002 (2) |
| C2 | 0.027 (3) | 0.021 (3) | 0.030 (3) | 0.005 (2) | 0.008 (3) | −0.002 (2) |
| C3 | 0.026 (3) | 0.029 (3) | 0.026 (3) | 0.002 (3) | −0.001 (3) | 0.006 (2) |
| C4 | 0.019 (3) | 0.019 (3) | 0.017 (2) | 0.000 (2) | 0.006 (2) | −0.006 (2) |
| C5 | 0.014 (3) | 0.032 (3) | 0.044 (4) | −0.003 (2) | 0.014 (3) | −0.010 (3) |
| C6 | 0.029 (3) | 0.021 (3) | 0.021 (3) | 0.001 (2) | 0.009 (2) | 0.005 (2) |
| C7 | 0.016 (3) | 0.019 (3) | 0.017 (2) | 0.004 (2) | 0.004 (2) | −0.002 (2) |
| Pt1—N1 | 2.013 (4) | C2—H2C | 0.9800 |
| Pt1—S1 | 2.189 (2) | C3—H3A | 0.9800 |
| Pt1—Cl1 | 2.3214 (13) | C3—H3B | 0.9800 |
| Pt1—Cl2 | 2.327 (2) | C3—H3C | 0.9800 |
| S1—O1 | 1.462 (4) | C4—H4A | 0.9800 |
| S1—C7 | 1.769 (5) | C4—H4B | 0.9800 |
| S1—C6 | 1.773 (5) | C4—H4C | 0.9800 |
| N1—C1 | 1.316 (6) | C5—H5A | 0.9800 |
| N1—H1N | 0.8556 | C5—H5B | 0.9800 |
| N2—C1 | 1.342 (7) | C5—H5C | 0.9800 |
| N2—C2 | 1.452 (7) | C6—H6A | 0.9800 |
| N2—C3 | 1.459 (7) | C6—H6B | 0.9800 |
| N3—C1 | 1.352 (6) | C6—H6C | 0.9800 |
| N3—C4 | 1.451 (6) | C7—H7A | 0.9800 |
| N3—C5 | 1.467 (6) | C7—H7B | 0.9800 |
| C2—H2A | 0.9800 | C7—H7C | 0.9800 |
| C2—H2B | 0.9800 | ||
| N1—Pt1—S1 | 91.13 (12) | N2—C3—H3A | 109.5 |
| N1—Pt1—Cl1 | 175.21 (12) | N2—C3—H3B | 109.5 |
| S1—Pt1—Cl1 | 90.38 (7) | H3A—C3—H3B | 109.5 |
| N1—Pt1—Cl2 | 88.20 (12) | N2—C3—H3C | 109.5 |
| S1—Pt1—Cl2 | 178.66 (11) | H3A—C3—H3C | 109.5 |
| Cl1—Pt1—Cl2 | 90.38 (7) | H3B—C3—H3C | 109.5 |
| O1—S1—C7 | 108.1 (2) | N3—C4—H4A | 109.5 |
| O1—S1—C6 | 107.6 (3) | N3—C4—H4B | 109.5 |
| C7—S1—C6 | 101.2 (3) | H4A—C4—H4B | 109.5 |
| O1—S1—Pt1 | 117.94 (19) | N3—C4—H4C | 109.5 |
| C7—S1—Pt1 | 110.29 (19) | H4A—C4—H4C | 109.5 |
| C6—S1—Pt1 | 110.4 (2) | H4B—C4—H4C | 109.5 |
| C1—N1—Pt1 | 129.5 (3) | N3—C5—H5A | 109.5 |
| C1—N1—H1N | 111.0 | N3—C5—H5B | 109.5 |
| Pt1—N1—H1N | 115.1 | H5A—C5—H5B | 109.5 |
| C1—N2—C2 | 122.2 (4) | N3—C5—H5C | 109.5 |
| C1—N2—C3 | 121.1 (4) | H5A—C5—H5C | 109.5 |
| C2—N2—C3 | 116.1 (4) | H5B—C5—H5C | 109.5 |
| C1—N3—C4 | 122.5 (4) | S1—C6—H6A | 109.5 |
| C1—N3—C5 | 121.4 (4) | S1—C6—H6B | 109.5 |
| C4—N3—C5 | 115.0 (4) | H6A—C6—H6B | 109.5 |
| N1—C1—N2 | 120.9 (5) | S1—C6—H6C | 109.5 |
| N1—C1—N3 | 120.7 (4) | H6A—C6—H6C | 109.5 |
| N2—C1—N3 | 118.4 (4) | H6B—C6—H6C | 109.5 |
| N2—C2—H2A | 109.5 | S1—C7—H7A | 109.5 |
| N2—C2—H2B | 109.5 | S1—C7—H7B | 109.5 |
| H2A—C2—H2B | 109.5 | H7A—C7—H7B | 109.5 |
| N2—C2—H2C | 109.5 | S1—C7—H7C | 109.5 |
| H2A—C2—H2C | 109.5 | H7A—C7—H7C | 109.5 |
| H2B—C2—H2C | 109.5 | H7B—C7—H7C | 109.5 |
| H··· | ||||
| N1—H1 | 0.86 | 2.21 | 3.021 (5) | 159 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.21 | 3.021 (5) | 159 |
Symmetry code: (i) .