Literature DB >> 23416748

DEAD-box helicases as integrators of RNA, nucleotide and protein binding.

Andrea A Putnam1, Eckhard Jankowsky.   

Abstract

DEAD-box helicases perform diverse cellular functions in virtually all steps of RNA metabolism from Bacteria to Humans. Although DEAD-box helicases share a highly conserved core domain, the enzymes catalyze a wide range of biochemical reactions. In addition to the well established RNA unwinding and corresponding ATPase activities, DEAD-box helicases promote duplex formation and displace proteins from RNA. They can also function as assembly platforms for larger ribonucleoprotein complexes, and as metabolite sensors. This review aims to provide a perspective on the diverse biochemical features of DEAD-box helicases and connections to structural information. We discuss these data in the context of a model that views the enzymes as integrators of RNA, nucleotide, and protein binding. This article is part of a Special Issue entitled: The Biology of RNA helicases - Modulation for life.
Copyright © 2013 Elsevier B.V. All rights reserved.

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Year:  2013        PMID: 23416748      PMCID: PMC3661757          DOI: 10.1016/j.bbagrm.2013.02.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  115 in total

1.  The DExH protein NPH-II is a processive and directional motor for unwinding RNA.

Authors:  E Jankowsky; C H Gross; S Shuman; A M Pyle
Journal:  Nature       Date:  2000-01-27       Impact factor: 49.962

2.  Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase.

Authors:  J M Caruthers; E R Johnson; D B McKay
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-21       Impact factor: 11.205

3.  Structural domains involved in the RNA folding activity of RNA helicase II/Gu protein.

Authors:  B C Valdez
Journal:  Eur J Biochem       Date:  2000-11

Review 4.  ATP utilization and RNA conformational rearrangement by DEAD-box proteins.

Authors:  Arnon Henn; Michael J Bradley; Enrique M De La Cruz
Journal:  Annu Rev Biophys       Date:  2012-02-13       Impact factor: 12.981

5.  Conformational changes of DEAD-box helicases monitored by single molecule fluorescence resonance energy transfer.

Authors:  Alexandra Z Andreou; Dagmar Klostermeier
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

6.  RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex.

Authors:  Huijue Jia; Xuying Wang; James T Anderson; Eckhard Jankowsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-24       Impact factor: 11.205

7.  Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase.

Authors:  A L Kistler; C Guthrie
Journal:  Genes Dev       Date:  2001-01-01       Impact factor: 11.361

Review 8.  Arginine methylation of RNA-binding proteins regulates cell function and differentiation.

Authors:  Ernest Blackwell; Stephanie Ceman
Journal:  Mol Reprod Dev       Date:  2012-01-23       Impact factor: 2.609

9.  The DEAD-box RNA helicase Dbp2 connects RNA quality control with repression of aberrant transcription.

Authors:  Sara C Cloutier; Wai Kit Ma; Luyen T Nguyen; Elizabeth J Tran
Journal:  J Biol Chem       Date:  2012-06-07       Impact factor: 5.157

10.  Specific domains in yeast translation initiation factor eIF4G strongly bias RNA unwinding activity of the eIF4F complex toward duplexes with 5'-overhangs.

Authors:  Vaishnavi Rajagopal; Eun-Hee Park; Alan G Hinnebusch; Jon R Lorsch
Journal:  J Biol Chem       Date:  2012-03-30       Impact factor: 5.486

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  77 in total

Review 1.  The DDX5/Dbp2 subfamily of DEAD-box RNA helicases.

Authors:  Zheng Xing; Wai Kit Ma; Elizabeth J Tran
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-12-02       Impact factor: 9.957

2.  Mechanism of cytoplasmic mRNA translation.

Authors:  Karen S Browning; Julia Bailey-Serres
Journal:  Arabidopsis Book       Date:  2015-04-24

Review 3.  Double-Stranded RNA Sensors and Modulators in Innate Immunity.

Authors:  Sun Hur
Journal:  Annu Rev Immunol       Date:  2019-01-23       Impact factor: 28.527

4.  Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock.

Authors:  Karen S Conrad; Jennifer M Hurley; Joanne Widom; Carol S Ringelberg; Jennifer J Loros; Jay C Dunlap; Brian R Crane
Journal:  EMBO J       Date:  2016-06-23       Impact factor: 11.598

Review 5.  The multiple functions of RNA helicases as drivers and regulators of gene expression.

Authors:  Cyril F Bourgeois; Franck Mortreux; Didier Auboeuf
Journal:  Nat Rev Mol Cell Biol       Date:  2016-06-02       Impact factor: 94.444

6.  The Dynamics of P Granule Liquid Droplets Are Regulated by the Caenorhabditis elegans Germline RNA Helicase GLH-1 via Its ATP Hydrolysis Cycle.

Authors:  Wenjun Chen; Yabing Hu; Charles F Lang; Jordan S Brown; Sierra Schwabach; Xiaoyan Song; Ying Zhang; Edwin Munro; Karen Bennett; Donglei Zhang; Heng-Chi Lee
Journal:  Genetics       Date:  2020-04-03       Impact factor: 4.562

Review 7.  Emerging relationship between RNA helicases and autophagy.

Authors:  Miao-Miao Zhao; Ru-Sha Wang; Yan-Lin Zhou; Zheng-Gang Yang
Journal:  J Zhejiang Univ Sci B       Date:  2020 Oct.       Impact factor: 3.066

8.  DHX33 Interacts with AP-2β To Regulate Bcl-2 Gene Expression and Promote Cancer Cell Survival.

Authors:  Jiuling Wang; Weimin Feng; Zhen Yuan; Jason D Weber; Yandong Zhang
Journal:  Mol Cell Biol       Date:  2019-08-12       Impact factor: 4.272

9.  The RNA helicase DDX46 inhibits innate immunity by entrapping m6A-demethylated antiviral transcripts in the nucleus.

Authors:  Qingliang Zheng; Jin Hou; Ye Zhou; Zhenyang Li; Xuetao Cao
Journal:  Nat Immunol       Date:  2017-08-28       Impact factor: 25.606

10.  Probing Transcriptome-Wide RNA Structural Changes Dependent on the DEAD-box Helicase Dbp2.

Authors:  Yu-Hsuan Lai; Elizabeth J Tran
Journal:  Methods Mol Biol       Date:  2021
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