Literature DB >> 23410279

Radial Domany-Kinzel models with mutation and selection.

Maxim O Lavrentovich1, Kirill S Korolev, David R Nelson.   

Abstract

We study the effect of spatial structure, genetic drift, mutation, and selective pressure on the evolutionary dynamics in a simplified model of asexual organisms colonizing a new territory. Under an appropriate coarse-graining, the evolutionary dynamics is related to the directed percolation processes that arise in voter models, the Domany-Kinzel (DK) model, contact process, and so on. We explore the differences between linear (flat front) expansions and the much less familiar radial (curved front) range expansions. For the radial expansion, we develop a generalized, off-lattice DK model that minimizes otherwise persistent lattice artifacts. With both simulations and analytical techniques, we study the survival probability of advantageous mutants, the spatial correlations between domains of neutral strains, and the dynamics of populations with deleterious mutations. "Inflation" at the frontier leads to striking differences between radial and linear expansions. For a colony with initial radius R(0) expanding at velocity v, significant genetic demixing, caused by local genetic drift, occurs only up to a finite time t(*)=R(0)/v, after which portions of the colony become causally disconnected due to the inflating perimeter of the expanding front. As a result, the effect of a selective advantage is amplified relative to genetic drift, increasing the survival probability of advantageous mutants. Inflation also modifies the underlying directed percolation transition, introducing novel scaling functions and modifications similar to a finite-size effect. Finally, we consider radial range expansions with deflating perimeters, as might arise from colonization initiated along the shores of an island.

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Year:  2013        PMID: 23410279     DOI: 10.1103/PhysRevE.87.012103

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  8 in total

1.  Spatially Constrained Growth Enhances Conversional Meltdown.

Authors:  Maxim O Lavrentovich; Mary E Wahl; David R Nelson; Andrew W Murray
Journal:  Biophys J       Date:  2016-06-21       Impact factor: 4.033

2.  The impact of long-range dispersal on gene surfing.

Authors:  Jayson Paulose; Oskar Hallatschek
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-20       Impact factor: 11.205

Review 3.  Emergence of evolutionary driving forces in pattern-forming microbial populations.

Authors:  Jona Kayser; Carl F Schreck; QinQin Yu; Matti Gralka; Oskar Hallatschek
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-05-26       Impact factor: 6.237

4.  Convection shapes the trade-off between antibiotic efficacy and the selection for resistance in spatial gradients.

Authors:  Matti Gralka; Diana Fusco; Stephen Martis; Oskar Hallatschek
Journal:  Phys Biol       Date:  2017-07-19       Impact factor: 2.583

5.  How Obstacles Perturb Population Fronts and Alter Their Genetic Structure.

Authors:  Wolfram Möbius; Andrew W Murray; David R Nelson
Journal:  PLoS Comput Biol       Date:  2015-12-22       Impact factor: 4.475

6.  Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations.

Authors:  Fred D Farrell; Matti Gralka; Oskar Hallatschek; Bartlomiej Waclaw
Journal:  J R Soc Interface       Date:  2017-06       Impact factor: 4.118

7.  Self-consistent dispersal puts tight constraints on the spatiotemporal organization of species-rich metacommunities.

Authors:  Jonas Denk; Oskar Hallatschek
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-21       Impact factor: 12.779

8.  Genetic drift and selection in many-allele range expansions.

Authors:  Bryan T Weinstein; Maxim O Lavrentovich; Wolfram Möbius; Andrew W Murray; David R Nelson
Journal:  PLoS Comput Biol       Date:  2017-12-01       Impact factor: 4.475

  8 in total

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