Literature DB >> 23409766

Allo-network drugs: extension of the allosteric drug concept to protein- protein interaction and signaling networks.

András Szilágyi1, Ruth Nussinov, Péter Csermely.   

Abstract

Allosteric drugs are usually more specific and have fewer side effects than orthosteric drugs targeting the same protein. Here, we overview the current knowledge on allosteric signal transmission from the network point of view, and show that most intra-protein conformational changes may be dynamically transmitted across protein-protein interaction and signaling networks of the cell. Allo-network drugs influence the pharmacological target protein indirectly using specific inter-protein network pathways. We show that allo-network drugs may have a higher efficiency to change the networks of human cells than those of other organisms, and can be designed to have specific effects on cells in a diseased state. Finally, we summarize possible methods to identify allo-network drug targets and sites, which may develop to a promising new area of systems-based drug design.

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Year:  2013        PMID: 23409766     DOI: 10.2174/1568026611313010007

Source DB:  PubMed          Journal:  Curr Top Med Chem        ISSN: 1568-0266            Impact factor:   3.295


  25 in total

1.  Local packing modulates diversity of iron pathways and cooperative behavior in eukaryotic and prokaryotic ferritins.

Authors:  Anatoly M Ruvinsky; Ilya A Vakser; Mario Rivera
Journal:  J Chem Phys       Date:  2014-03-21       Impact factor: 3.488

2.  Eigenvector centrality for characterization of protein allosteric pathways.

Authors:  Christian F A Negre; Uriel N Morzan; Heidi P Hendrickson; Rhitankar Pal; George P Lisi; J Patrick Loria; Ivan Rivalta; Junming Ho; Victor S Batista
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-10       Impact factor: 11.205

3.  Hidden electrostatic basis of dynamic allostery in a PDZ domain.

Authors:  Amit Kumawat; Suman Chakrabarty
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-20       Impact factor: 11.205

Review 4.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

5.  Model for high-throughput screening of multitarget drugs in chemical neurosciences: synthesis, assay, and theoretic study of rasagiline carbamates.

Authors:  Nerea Alonso; Olga Caamaño; Francisco J Romero-Duran; Feng Luan; M Natália D S Cordeiro; Matilde Yañez; Humberto González-Díaz; Xerardo García-Mera
Journal:  ACS Chem Neurosci       Date:  2013-07-29       Impact factor: 4.418

6.  Computational Tools for Allosteric Drug Discovery: Site Identification and Focus Library Design.

Authors:  Wenkang Huang; Ruth Nussinov; Jian Zhang
Journal:  Methods Mol Biol       Date:  2017

7.  Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.

Authors:  Gabrielle Stetz; Gennady M Verkhivker
Journal:  PLoS One       Date:  2015-11-30       Impact factor: 3.240

Review 8.  Genotype to phenotype via network analysis.

Authors:  Hannah Carter; Matan Hofree; Trey Ideker
Journal:  Curr Opin Genet Dev       Date:  2013-11-14       Impact factor: 5.578

Review 9.  Computational approaches to mapping allosteric pathways.

Authors:  Victoria A Feher; Jacob D Durrant; Adam T Van Wart; Rommie E Amaro
Journal:  Curr Opin Struct Biol       Date:  2014-03-22       Impact factor: 6.809

Review 10.  Exploring the role of receptor flexibility in structure-based drug discovery.

Authors:  Ferran Feixas; Steffen Lindert; William Sinko; J Andrew McCammon
Journal:  Biophys Chem       Date:  2013-11-09       Impact factor: 2.352

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