| Literature DB >> 23409138 |
Sylvain Roche1, Hanane El Garch, Sylvie Brunet, Hervé Poulet, Jean Iwaz, René Ecochard, Philippe Vanhems.
Abstract
OBJECTIVE: The early events of human immunodeficiency virus infection seem critical for progression toward disease and antiretroviral therapy initiation. We wanted to clarify some still unknown prognostic relationships between inoculum size and changes in various immunological and virological markers. Feline immunodeficiency virus infection could be a helpful model.Entities:
Mesh:
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Year: 2013 PMID: 23409138 PMCID: PMC3567045 DOI: 10.1371/journal.pone.0056135
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Number of infected cats according to the virus strain and the inoculum titre.
| Titre (log10/mL of CCID50) | |||||||||||
| 0.25 | 0.7 | 1.25 | 1.3 | 1.7 | 2.6 | 2.7 | 3.2 | 3.6 | 3.7 | 4.2 | |
| EVA clade B | 5 | 5 | 11 | ||||||||
| Glasgow-8 clade A | 4 | 4 | 5 | 5 | |||||||
| Petaluma clade A | 6 | 6 | 22 | 12 | 12 | 5 | |||||
Figure 1Trajectory-groups.
Trajectory-groups (with 95% confidence intervals) for viremia and changes in T-cell markers over time since contamination (in weeks). Viremia is expressed in log10 of viral RNA copies per mL of plasma. The hatched area indicates the area below the virus detection threshold (1.9). Each T cell marker is expressed as the predicted value of log10(X w/X 0) where X 0 is the value at baseline and X w the value at week w (1 to 12).
Criteria for the choice of the optimal number of trajectory-groups.
| Parameters and number of trajectories | Bayesian Information Criterion | Probability of “correct model” |
| Viremia | ||
| 2 trajectories | −580.24 | 0.00 |
| 3 trajectories | −560.06 | 0.99 |
| CD4 | ||
| 2 trajectories | −77.41 | 0.14 |
| 3 trajectories | −75.98 | 0.60 |
| 4 trajectories | −76.86 | 0.25 |
| CD8 | ||
| 2 trajectories | −118.74 | 0.00 |
| 3 trajectories | −110.70 | 0.99 |
| CD8βlowCD62Lneg | ||
| 2 trajectories | −155.70 | 0.99 |
| 3 trajectories | −162.62 | 0.00 |
| Percent CD8βlow/CD8 | ||
| 2 trajectories | −58.09 | 0.00 |
| 3 trajectories | −54.82 | 0.12 |
| 4 trajectories | −52.81 | 0.88 |
Aspect of the trajectories of viremia and changes in T-cell markers.
| Parameters and trajectories | Trajectory aspect | Proportion of cats | |
| Week 1 | Weeks 2 to 12 | ||
| Viremia | |||
| Trajectory 1 | Flat | Protracted and moderate increase | 19.1% |
| Trajectory 2 | Flat | Moderate increase | 35.3% |
| Trajectory 3 | Steep increase | Steep increase then stability | 45.6% |
| CD4 | |||
| Trajectory 1 | Slight increase | Very steep decrease then sharp increase | 32.0% |
| Trajectory 2 | Moderate increase | Slight decline | 56.4% |
| Trajectory 3 | Steep increase | Flat | 11.6% |
| CD8 | |||
| Trajectory 1 | Very steep increase | Very steep decrease then sharp increase | 28.1% |
| Trajectory 2 | Slight increase | Slight decrease | 43.7% |
| Trajectory 3 | Moderate increase | Slight decrease then slight increase | 28.3% |
| CD4/CD8 ratio | |||
| Trajectory 1 | Very steep decrease | Very steep increase then steep decrease | 6.4% |
| Trajectory 2 | Slight increase | Moderate decrease | 42.6% |
| Trajectory 3 | Flat | Slight decrease | 51.0% |
| CD8βlowCD62Lneg | |||
| Trajectory 1 | Moderate increase | Moderate decrease then moderate increase | 57.5% |
| Trajectory 2 | Steep increase | Moderate increase | 42.5% |
| Percent CD8βlow/CD8 | |||
| Trajectory 1 | Slight decrease | Slight decrease then steep increase | 14.5% |
| Trajectory 2 | Slight increase | Slight increase | 43.0% |
| Trajectory 3 | Moderate increase | Slight increase | 28.1% |
| Trajectory 4 | Very steep increase | Slight increase | 14.5% |
Sex and age of cats by trajectory group for viremia and changes in T-cell markers.
| Parameters and trajectories | Number of cats | Sex | Age in weeks (mean±SD) |
| Viremia | |||
| Trajectory 1 | 20 | 12 females (60%)/8 males (40%) | 24.2±7.3 |
| Trajectory 2 | 36 | 19 females (52.78%)/17 males (47.22%) | 26.2±6.7 |
| Trajectory 3 | 46 | 22 females (47.83%)/24 males (52.17%) | 19.6±7.5 |
| CD4 | |||
| Trajectory 1 | 26 | 16 females (61.54%)/10 males (38.46%) | 19.0±6.2 |
| Trajectory 2 | 67 | 33 females (49.25%)/34 males (50.75%) | 24.1±8.0 |
| Trajectory 3 | 9 | 4 females (44.44%)/5 males (55.56%) | 24.1±6.2 |
| CD8 | |||
| Trajectory 1 | 24 | 13 females (54.17%)/11 males (45.83%) | 16.8±3.8 |
| Trajectory 2 | 57 | 28 females (49.12%)/29 males (50.88%) | 25.6±7.6 |
| Trajectory 3 | 21 | 12 females (57.14%)/9 males (42.86%) | 22.4±7.6 |
| CD4/CD8 ratio | |||
| Trajectory 1 | 5 | 3 females (60.00%)/2 males (40.00%) | 17.3±9.1 |
| Trajectory 2 | 32 | 19 females (59.38%)/13 males (40.63%) | 20.3±7.9 |
| Trajectory 3 | 65 | 31 females (47.69%)/34 males (52.31%) | 24.5±7.1 |
| CD8βlowCD62Lneg | |||
| Trajectory 1 | 69 | 34 females (49.28%)/35 males (50.72%) | 24.0±7.4 |
| Trajectory 2 | 33 | 19 females (57.58%)/14 males (42.42%) | 20.4±8.0 |
| Percent CD8βlow/CD8 | |||
| Trajectory 1 | 12 | 6 females (50.00%)/6 males (50.00%) | 22.3±5.3 |
| Trajectory 2 | 57 | 30 females (52.63%)/27 males (47.37%) | 25.6±6.9 |
| Trajectory 3 | 21 | 9 females (42.86%)/12 males (57.14%) | 16.3±6.8 |
| Trajectory 4 | 12 | 8 females (66.67%)/4 males (33.33%) | 21.8±8.5 |
Cross-tabulation of trajectory-groups according to viremia and changes in T-cell markers during the 12-week period after FIV inoculation.
| Parameters andtrajectories | Viremia | CD4 | CD8 | ||||||
| 1 | 2 | 3 | 1 | 2 | 3 | 1 | 2 | 3 | |
| CD4 | |||||||||
| 1 | 5 | 8 | 13 | ||||||
| 2 | 10 | 25 | 32 | ||||||
| 3 | 5 | 3 | 1 | ||||||
| CD8 | |||||||||
| 1 | 5 | 7 | 12 | 19 | 5 | 0 | |||
| 2 | 8 | 21 | 28 | 7 | 49 | 1 | |||
| 3 | 7 | 8 | 6 | 0 | 13 | 8 | |||
| Percent CD8βlow/CD8 | |||||||||
| 1 | 7 | 5 | 0 | 0 | 6 | 6 | 0 | 5 | 7 |
| 2 | 13 | 27 | 17 | 16 | 39 | 2 | 12 | 37 | 8 |
| 3 | 0 | 0 | 21 | 10 | 11 | 0 | 10 | 7 | 4 |
| 4 | 0 | 4 | 8 | 0 | 11 | 1 | 2 | 8 | 2 |
The content of each cell is the number of cats among the 102 cats of the study.
Polychoric correlation coefficients between groups of inoculum and trajectory-groups of viremia and changes in T-cell markers during the 12-week period after virus inoculation.
| Parameters | Inoculum | Viremia | CD4 | CD8 | CD4/CD8 ratio | CD8βlow CD62Lneg | Percent CD8βlow/CD8 |
| Inoculum | 1 | ||||||
| Viremia | 0.80 | 1 | |||||
| CD4 | −0.19 | −0.23 | 1 | ||||
| CD8 | −0.16 | −0.18 | 0.88 | 1 | |||
| CD4/CD8 ratio | −0.02 | −0.32 | 0.08 | −0.20 | 1 | ||
| CD8βlowCD62Lneg | 0.14 | 0.19 | 0.54 | 0.51 | −0.63 | 1 | |
| Percent CD8βlow/CD8 | 0.56 | 0.70 | −0.31 | −0.30 | −0.34 | 0.49 | 1 |
Significance:
p<0.01,
p<0.05,
Polychoric correlations are not correlations between quantitative variables but correlations between ordinal variables; here, the trajectory-groups. For example, CD4 and CD8 are viewed as ordinal variables, each with three categories. Using the cross-tabulation of CD8 by CD4 given in Table 4, a polychoric correlation of 0.88 means that cats that belong to group 3 for CD4 have a higher probability of belonging also to group 3 for CD8 than to the two other groups. Conversely, 0.08 means that cats that belong to group 3 for CD4 have a low probability of belonging to group 3 for CD4/CD8 ratio and could belong to any of the three groups for the CD4/CD8 ratio.