Literature DB >> 23408602

Molecular aspects and comparative genomics of bacteriophage endolysins.

Hugo Oliveira1, Luís D R Melo, Sílvio B Santos, Franklin L Nóbrega, Eugénio C Ferreira, Nuno Cerca, Joana Azeredo, Leon D Kluskens.   

Abstract

Phages are recognized as the most abundant and diverse entities on the planet. Their diversity is determined predominantly by their dynamic adaptation capacities when confronted with different selective pressures in an endless cycle of coevolution with a widespread group of bacterial hosts. At the end of the infection cycle, progeny virions are confronted with a rigid cell wall that hinders their release into the environment and the opportunity to start a new infection cycle. Consequently, phages encode hydrolytic enzymes, called endolysins, to digest the peptidoglycan. In this work, we bring to light all phage endolysins found in completely sequenced double-stranded nucleic acid phage genomes and uncover clues that explain the phage-endolysin-host ecology that led phages to recruit unique and specialized endolysins.

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Year:  2013        PMID: 23408602      PMCID: PMC3624390          DOI: 10.1128/JVI.03277-12

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  95 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

Review 2.  Bacteriophage resistance mechanisms.

Authors:  Simon J Labrie; Julie E Samson; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2010-03-29       Impact factor: 60.633

3.  Phage lysin LysK can be truncated to its CHAP domain and retain lytic activity against live antibiotic-resistant staphylococci.

Authors:  Marianne Horgan; Gary O'Flynn; Jennifer Garry; Jakki Cooney; Aidan Coffey; Gerald F Fitzgerald; R Paul Ross; Olivia McAuliffe
Journal:  Appl Environ Microbiol       Date:  2008-12-01       Impact factor: 4.792

Review 4.  LysM, a widely distributed protein motif for binding to (peptido)glycans.

Authors:  Girbe Buist; Anton Steen; Jan Kok; Oscar P Kuipers
Journal:  Mol Microbiol       Date:  2008-05       Impact factor: 3.501

5.  SOSUI: classification and secondary structure prediction system for membrane proteins.

Authors:  T Hirokawa; S Boon-Chieng; S Mitaku
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

6.  The structure of bacteriophage T7 lysozyme, a zinc amidase and an inhibitor of T7 RNA polymerase.

Authors:  X Cheng; X Zhang; J W Pflugrath; F W Studier
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-26       Impact factor: 11.205

7.  Molecular analysis of the lysis protein Lys encoded by Lactobacillus plantarum phage phig1e.

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Journal:  Gene       Date:  2002-10-16       Impact factor: 3.688

8.  The pinholin of lambdoid phage 21: control of lysis by membrane depolarization.

Authors:  Taehyun Park; Douglas K Struck; Chelsey A Dankenbring; Ry Young
Journal:  J Bacteriol       Date:  2007-09-07       Impact factor: 3.490

Review 9.  Bacteriophage lysins as effective antibacterials.

Authors:  Vincent A Fischetti
Journal:  Curr Opin Microbiol       Date:  2008-10-14       Impact factor: 7.934

10.  Characterization of modular bacteriophage endolysins from Myoviridae phages OBP, 201φ2-1 and PVP-SE1.

Authors:  Maarten Walmagh; Yves Briers; Silvio Branco dos Santos; Joana Azeredo; Rob Lavigne
Journal:  PLoS One       Date:  2012-05-15       Impact factor: 3.240

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  98 in total

1.  Phylogenomic network and comparative genomics reveal a diverged member of the ΦKZ-related group, marine vibrio phage ΦJM-2012.

Authors:  Ho Bin Jang; Fernand F Fagutao; Seong Won Nho; Seong Bin Park; In Seok Cha; Jong Earn Yu; Jung Seok Lee; Se Pyeong Im; Takashi Aoki; Tae Sung Jung
Journal:  J Virol       Date:  2013-09-25       Impact factor: 5.103

2.  Characterization of the N-Terminal Catalytic Domain of Lytµ1/6, an Endolysin from Streptomyces aureofaciens Phage µ1/6.

Authors:  Jarmila Farkašovská; Andrej Godány
Journal:  Curr Microbiol       Date:  2016-07-23       Impact factor: 2.188

3.  Distinct Biological Potential of Streptococcus gordonii and Streptococcus sanguinis Revealed by Comparative Genome Analysis.

Authors:  Wenning Zheng; Mui Fern Tan; Lesley A Old; Ian C Paterson; Nicholas S Jakubovics; Siew Woh Choo
Journal:  Sci Rep       Date:  2017-06-07       Impact factor: 4.379

4.  Multiple mechanisms drive phage infection efficiency in nearly identical hosts.

Authors:  Cristina Howard-Varona; Katherine R Hargreaves; Natalie E Solonenko; Lye Meng Markillie; Richard Allen White; Heather M Brewer; Charles Ansong; Galya Orr; Joshua N Adkins; Matthew B Sullivan
Journal:  ISME J       Date:  2018-03-22       Impact factor: 10.302

5.  Bacteriophage PBC1 and its endolysin as an antimicrobial agent against Bacillus cereus.

Authors:  Minsuk Kong; Sangryeol Ryu
Journal:  Appl Environ Microbiol       Date:  2015-01-16       Impact factor: 4.792

6.  The antibacterial activity of E. coli bacteriophage lysin lysep3 is enhanced by fusing the Bacillus amyloliquefaciens bacteriophage endolysin binding domain D8 to the C-terminal region.

Authors:  Shuang Wang; Jingmin Gu; Meng Lv; Zhimin Guo; Guangmou Yan; Ling Yu; Chongtao Du; Xin Feng; Wenyu Han; Changjiang Sun; Liancheng Lei
Journal:  J Microbiol       Date:  2017-01-26       Impact factor: 3.422

7.  Heterologous surface display on lactic acid bacteria: non-GMO alternative?

Authors:  Petra Zadravec; Borut Štrukelj; Aleš Berlec
Journal:  Bioengineered       Date:  2015-04-16       Impact factor: 3.269

Review 8.  Antimicrobial bacteriophage-derived proteins and therapeutic applications.

Authors:  Dwayne R Roach; David M Donovan
Journal:  Bacteriophage       Date:  2015-06-23

9.  DUF3380 Domain from a Salmonella Phage Endolysin Shows Potent N-Acetylmuramidase Activity.

Authors:  Lorena Rodríguez-Rubio; Hans Gerstmans; Simon Thorpe; Stéphane Mesnage; Rob Lavigne; Yves Briers
Journal:  Appl Environ Microbiol       Date:  2016-07-29       Impact factor: 4.792

10.  Expression of a Peptidoglycan Hydrolase from Lytic Bacteriophages Atu_ph02 and Atu_ph03 Triggers Lysis of Agrobacterium tumefaciens.

Authors:  Hedieh Attai; Jeanette Rimbey; George P Smith; Pamela J B Brown
Journal:  Appl Environ Microbiol       Date:  2017-11-16       Impact factor: 4.792

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